Anna Karnkowska

Affiliations

Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Warsaw, Poland.

Publications (25)

Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses.

Open biology

Avec: Alexei Y Kostygov , Anna Karnkowska , Jan Votýpka , Daria Tashyreva , Kacper Maciszewski , Vyacheslav Yurchenko , Julius Lukeš

18S rDNA sequence-structure phylogeny of the Euglenophyceae (Euglenozoa, Euglenida).

The Journal of eukaryotic microbiology

Avec: Antonia S Rackevei , Anna Karnkowska , Matthias Wolf

The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion.

Molecular biology and evolution

Avec: Anna Karnkowska , Sebastian C Treitli , Ondřej Brzoň , Lukáš Novák , Vojtěch Vacek , Petr Soukal , Lael D Barlow , Emily K Herman , Shweta V Pipaliya , Tomáš Pánek , David Žihala , Romana Petrželková , Anzhelika Butenko , Laura Eme , Courtney W Stairs , Andrew J Roger , Marek Eliáš , Joel B Dacks , Vladimír Hampl

EukRef-excavates: seven curated SSU ribosomal RNA gene databases.

Database : the journal of biological databases and curation

Avec: Martin Kolisko , Olga Flegontova , Anna Karnkowska , Gordon Lax , Julia M Maritz , Tomáš Pánek , Petr Táborský , Jane M Carlton , Ivan Čepička , Aleš Horák , Julius Lukeš , Alastair G B Simpson , Vera Tai

Heterotrophic euglenid Rhabdomonas costata resembles its phototrophic relatives in many aspects of molecular and cell biology.

Scientific reports

Avec: Petr Soukal , Štěpánka Hrdá , Anna Karnkowska , Rafał Milanowski , Jana Szabová , Miluše Hradilová , Hynek Strnad , Čestmír Vlček , Ivan Čepička , Vladimír Hampl

Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles.

Molecular phylogenetics and evolution

Avec: Anna Cho , Denis V Tikhonenkov , Elisabeth Hehenberger , Anna Karnkowska , Alexander P Mylnikov , Patrick J Keeling

Euglenozoan kleptoplasty illuminates the early evolution of photoendosymbiosis.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Anna Karnkowska , Naoji Yubuki , Moe Maruyama , Aika Yamaguchi , Yuichiro Kashiyama , Toshinobu Suzaki , Patrick J Keeling , Vladimír Hampl , Brian S Leander

Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs.

Molecular phylogenetics and evolution

Avec: G Lax , M Kolisko , Y Eglit , W J Lee , N Yubuki , A Karnkowska , B S Leander , G Burger , P J Keeling , A G B Simpson

Highly Reduced Plastid Genomes of the Non-photosynthetic Dictyochophyceans

Frontiers in plant science

Avec: Motoki Kayama , Kacper Maciszewski , Akinori Yabuki , Hideaki Miyashita , Anna Karnkowska , Ryoma Kamikawa

Maturyoshka: A maturase inside a maturase, and other peculiarities of the novel chloroplast genomes of marine euglenophytes.

Molecular phylogenetics and evolution

Avec: Kacper Maciszewski , Nadja Dabbagh , Angelika Preisfeld , Anna Karnkowska

Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world.

Biology open

Avec: ThankGod Echezona Ebenezer , Ross S Low , Ellis Charles O'Neill , Ishuo Huang , Antonio DeSimone , Scott C Farrow , Robert A Field , Michael L Ginger , Sergio Adrián Guerrero , Michael Hammond , Vladimír Hampl , Geoff Horst , Takahiro Ishikawa , Anna Karnkowska , Eric W Linton , Peter Myler , Masami Nakazawa , Pierre Cardol , Rosina Sánchez-Thomas , Barry J Saville , Mahfuzur R Shah , Alastair G B Simpson , Aakash Sur , Kengo Suzuki , Kevin M Tyler , Paul V Zimba , Neil Hall , Mark C Field

Challenging the Importance of Plastid Genome Structure Conservation: New Insights From Euglenophytes.

Molecular biology and evolution

Avec: Kacper Maciszewski , Alicja Fells , Anna Karnkowska

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

The Journal of eukaryotic microbiology

Avec: Sina M Adl , David Bass , Christopher E Lane , Julius Lukeš , Conrad L Schoch , Alexey Smirnov , Sabine Agatha , Cedric Berney , Matthew W Brown , Fabien Burki , Paco Cárdenas , Ivan Čepička , Lyudmila Chistyakova , Javier Del Campo , Micah Dunthorn , Bente Edvardsen , Yana Eglit , Laure Guillou , Vladimír Hampl , Aaron A Heiss , Mona Hoppenrath , Timothy Y James , Anna Karnkowska , Sergey Karpov , Eunsoo Kim , Martin Kolisko , Alexander Kudryavtsev , Daniel J G Lahr , Enrique Lara , Line Le Gall , Denis H Lynn , David G Mann , Ramon Massana , Edward A D Mitchell , Christine Morrow , Jong Soo Park , Jan W Pawlowski , Martha J Powell , Daniel J Richter , Sonja Rueckert , Lora Shadwick , Satoshi Shimano , Frederick W Spiegel , Guifré Torruella , Noha Youssef , Vasily Zlatogursky , Qianqian Zhang

Analyses of environmental sequences and two regions of chloroplast genomes revealed the presence of new clades of photosynthetic euglenids in marine environments.

Environmental microbiology reports

Avec: Soňa Lukešová , Michał Karlicki , Lucia Tomečková Hadariová , Jana Szabová , Anna Karnkowska , Vladimír Hampl

Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha.

Scientific reports

Avec: Racquel A Singh , Vittorio Boscaro , Erick R James , Anna Karnkowska , Martin Kolisko , Gregory S Gavelis , Noriko Okamoto , Javier Del Campo , Rebecca Fiorito , Elisabeth Hehenberger , Nicholas A T Irwin , Varsha Mathur , Rudolf H Scheffrahn , Patrick J Keeling

Sequencing and Analysis of the Complete Organellar Genomes of

Frontiers in plant science

Avec: Zofia Bakuła , Robert Gromadka , Jan Gawor , Paweł Siedlecki , Jan J Pomorski , Kacper Maciszewski , Agnieszka Gromadka , Anna Karnkowska , Tomasz Jagielski

Typical structure of rRNA coding genes in diplonemids points to two independent origins of the bizarre rDNA structures of euglenozoans.

BMC ecology and evolution

Avec: Paweł Hałakuc , Anna Karnkowska , Rafał Milanowski

The protist cultural renaissance.

Trends in microbiology

Avec: Javier Del Campo , Maria Carlos-Oliveira , Ivan Čepička , Elisabeth Hehenberger , Aleš Horák , Anna Karnkowska , Martin Kolisko , Enrique Lara , Julius Lukeš , Tomáš Pánek , Kasia Piwosz , Daniel J Richter , Pavel Škaloud , Robert Sutak , Jan Tachezy , Vladimír Hampl

Dictyochophyceae Plastid Genomes Reveal Unusual Variability in Their Organization.

Journal of phycology

Avec: Kwi Young Han , Kacper Maciszewski , Louis Graf , Ji Hyun Yang , Robert A Andersen , Anna Karnkowska , Hwan Su Yoon

Should I stay or should I go? Retention and loss of components in vestigial endosymbiotic organelles.

Current opinion in genetics & development

Avec: Kacper Maciszewski , Anna Karnkowska

Tiara: deep learning-based classification system for eukaryotic sequences.

Bioinformatics (Oxford, England)

Avec: Michał Karlicki , Stanisław Antonowicz , Anna Karnkowska

Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria.

PLoS genetics

Avec: Lukáš V F Novák , Sebastian C Treitli , Jan Pyrih , Paweł Hałakuc , Shweta V Pipaliya , Vojtěch Vacek , Ondřej Brzoň , Petr Soukal , Laura Eme , Joel B Dacks , Anna Karnkowska , Marek Eliáš , Vladimír Hampl

Contrasting outcomes of genome reduction in mikrocytids and microsporidians.

BMC biology

Avec: Vojtečh Žárský , Anna Karnkowska , Vittorio Boscaro , Morelia Trznadel , Thomas A Whelan , Markus Hiltunen-Thorén , Ioana Onut-Brännström , Cathryn L Abbott , Naomi M Fast , Fabien Burki , Patrick J Keeling

Single-cell genomics revealed Candidatus Grellia alia sp. nov. as an endosymbiont of Eutreptiella sp. (Euglenophyceae).

Protist

Avec: Metody Hollender , Marta Sałek , Michał Karlicki , Anna Karnkowska

Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning.

FEMS microbiology ecology

Avec: Michał Karlicki , Anna Bednarska , Paweł Hałakuc , Kacper Maciszewski , Anna Karnkowska

Réseau de co-auteurs

Kacper Maciszewski 8 collaborations

Vladimír Hampl 8 collaborations

Julius Lukeš 4 collaborations

Martin Kolisko 4 collaborations

Ivan Čepička 4 collaborations

Patrick J Keeling 4 collaborations

Michał Karlicki 4 collaborations

Petr Soukal 3 collaborations

Tomáš Pánek 3 collaborations

Elisabeth Hehenberger 3 collaborations

Javier Del Campo 3 collaborations

Paweł Hałakuc 3 collaborations

Sebastian C Treitli 2 collaborations

Ondřej Brzoň 2 collaborations

Vojtěch Vacek 2 collaborations

Shweta V Pipaliya 2 collaborations

Laura Eme 2 collaborations

Marek Eliáš 2 collaborations

Joel B Dacks 2 collaborations

Aleš Horák 2 collaborations

Alastair G B Simpson 2 collaborations

Rafał Milanowski 2 collaborations

Jana Szabová 2 collaborations

Fabien Burki 2 collaborations

Enrique Lara 2 collaborations

Daniel J Richter 2 collaborations

Vittorio Boscaro 2 collaborations

Alexei Y Kostygov 1 collaboration

Jan Votýpka 1 collaboration

Daria Tashyreva 1 collaboration

Vyacheslav Yurchenko 1 collaboration

Antonia S Rackevei 1 collaboration

Matthias Wolf 1 collaboration

Lukáš Novák 1 collaboration

Lael D Barlow 1 collaboration

Emily K Herman 1 collaboration

David Žihala 1 collaboration

Romana Petrželková 1 collaboration

Anzhelika Butenko 1 collaboration

Courtney W Stairs 1 collaboration

Andrew J Roger 1 collaboration

Olga Flegontova 1 collaboration

Gordon Lax 1 collaboration

Julia M Maritz 1 collaboration

Petr Táborský 1 collaboration

Jane M Carlton 1 collaboration

Vera Tai 1 collaboration

Štěpánka Hrdá 1 collaboration

Miluše Hradilová 1 collaboration

Hynek Strnad 1 collaboration

Čestmír Vlček 1 collaboration

Anna Cho 1 collaboration

Denis V Tikhonenkov 1 collaboration

Alexander P Mylnikov 1 collaboration

Naoji Yubuki 1 collaboration

Moe Maruyama 1 collaboration

Aika Yamaguchi 1 collaboration

Yuichiro Kashiyama 1 collaboration

Toshinobu Suzaki 1 collaboration

Brian S Leander 1 collaboration

G Lax 1 collaboration

M Kolisko 1 collaboration

Y Eglit 1 collaboration

W J Lee 1 collaboration

N Yubuki 1 collaboration

A Karnkowska 1 collaboration

B S Leander 1 collaboration

G Burger 1 collaboration

P J Keeling 1 collaboration

A G B Simpson 1 collaboration

Motoki Kayama 1 collaboration

Akinori Yabuki 1 collaboration

Hideaki Miyashita 1 collaboration

Ryoma Kamikawa 1 collaboration

Nadja Dabbagh 1 collaboration

Angelika Preisfeld 1 collaboration

ThankGod Echezona Ebenezer 1 collaboration

Ross S Low 1 collaboration

Ellis Charles O'Neill 1 collaboration

Ishuo Huang 1 collaboration

Antonio DeSimone 1 collaboration

Scott C Farrow 1 collaboration

Robert A Field 1 collaboration

Michael L Ginger 1 collaboration

Sergio Adrián Guerrero 1 collaboration

Michael Hammond 1 collaboration

Geoff Horst 1 collaboration

Takahiro Ishikawa 1 collaboration

Eric W Linton 1 collaboration

Peter Myler 1 collaboration

Masami Nakazawa 1 collaboration

Pierre Cardol 1 collaboration

Rosina Sánchez-Thomas 1 collaboration

Barry J Saville 1 collaboration

Mahfuzur R Shah 1 collaboration

Aakash Sur 1 collaboration

Kengo Suzuki 1 collaboration

Kevin M Tyler 1 collaboration

Paul V Zimba 1 collaboration

Neil Hall 1 collaboration

Mark C Field 1 collaboration

Alicja Fells 1 collaboration

Sina M Adl 1 collaboration

David Bass 1 collaboration

Christopher E Lane 1 collaboration

Conrad L Schoch 1 collaboration

Alexey Smirnov 1 collaboration

Sabine Agatha 1 collaboration

Cedric Berney 1 collaboration

Matthew W Brown 1 collaboration

Paco Cárdenas 1 collaboration

Lyudmila Chistyakova 1 collaboration

Micah Dunthorn 1 collaboration

Bente Edvardsen 1 collaboration

Yana Eglit 1 collaboration

Laure Guillou 1 collaboration

Aaron A Heiss 1 collaboration

Mona Hoppenrath 1 collaboration

Timothy Y James 1 collaboration

Sergey Karpov 1 collaboration

Eunsoo Kim 1 collaboration

Alexander Kudryavtsev 1 collaboration

Daniel J G Lahr 1 collaboration

Line Le Gall 1 collaboration

Denis H Lynn 1 collaboration

David G Mann 1 collaboration

Ramon Massana 1 collaboration

Edward A D Mitchell 1 collaboration

Christine Morrow 1 collaboration

Jong Soo Park 1 collaboration

Jan W Pawlowski 1 collaboration

Martha J Powell 1 collaboration

Sonja Rueckert 1 collaboration

Lora Shadwick 1 collaboration

Satoshi Shimano 1 collaboration

Frederick W Spiegel 1 collaboration

Guifré Torruella 1 collaboration

Noha Youssef 1 collaboration

Vasily Zlatogursky 1 collaboration

Qianqian Zhang 1 collaboration

Soňa Lukešová 1 collaboration

Lucia Tomečková Hadariová 1 collaboration

Racquel A Singh 1 collaboration

Erick R James 1 collaboration

Gregory S Gavelis 1 collaboration

Noriko Okamoto 1 collaboration

Rebecca Fiorito 1 collaboration

Nicholas A T Irwin 1 collaboration

Varsha Mathur 1 collaboration

Rudolf H Scheffrahn 1 collaboration

Zofia Bakuła 1 collaboration

Robert Gromadka 1 collaboration

Jan Gawor 1 collaboration

Paweł Siedlecki 1 collaboration

Jan J Pomorski 1 collaboration

Agnieszka Gromadka 1 collaboration

Tomasz Jagielski 1 collaboration

Maria Carlos-Oliveira 1 collaboration

Kasia Piwosz 1 collaboration

Pavel Škaloud 1 collaboration

Robert Sutak 1 collaboration

Jan Tachezy 1 collaboration

Kwi Young Han 1 collaboration

Louis Graf 1 collaboration

Ji Hyun Yang 1 collaboration

Robert A Andersen 1 collaboration

Hwan Su Yoon 1 collaboration

Stanisław Antonowicz 1 collaboration

Lukáš V F Novák 1 collaboration

Jan Pyrih 1 collaboration

Vojtečh Žárský 1 collaboration

Morelia Trznadel 1 collaboration

Thomas A Whelan 1 collaboration

Markus Hiltunen-Thorén 1 collaboration

Ioana Onut-Brännström 1 collaboration

Cathryn L Abbott 1 collaboration

Naomi M Fast 1 collaboration

Metody Hollender 1 collaboration

Marta Sałek 1 collaboration

Anna Bednarska 1 collaboration