Agne Antanaviciute

Affiliations

Leeds Institute of Medical Research, Wellcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK.

Publications (25)

Translating Biomarkers of Cholangiocarcinoma for Theranosis: A Systematic Review.

Cancers

Avec: Imeshi Wijetunga , Laura E McVeigh , Antonia Charalambous , Agne Antanaviciute , Ian M Carr , Amit Nair , K Raj Prasad , Nicola Ingram , P Louise Coletta

A robust deep learning workflow to predict CD8 + T-cell epitopes.

Genome medicine

Avec: Chloe H Lee , Jaesung Huh , Paul R Buckley , Myeongjun Jang , Mariana Pereira Pinho , Ricardo A Fernandes , Agne Antanaviciute , Alison Simmons , Hashem Koohy

Epithelial-derived gasdermin D mediates nonlytic IL-1β release during experimental colitis.

The Journal of clinical investigation

Avec: Katarzyna Bulek , Junjie Zhao , Yun Liao , Nitish Rana , Daniele Corridoni , Agne Antanaviciute , Xing Chen , Han Wang , Wen Qian , William A Miller-Little , Shadi Swaidani , Fangqiang Tang , Belinda B Willard , Keith McCrae , Zizhen Kang , George R Dubyak , Fabio Cominelli , Alison Simmons , Theresa T Pizarro , Xiaoxia Li

TNF-α Regulates Human Plasmacytoid Dendritic Cells by Suppressing IFN-α Production and Enhancing T Cell Activation.

Journal of immunology (Baltimore, Md. : 1950)

Avec: Antonios Psarras , Agne Antanaviciute , Adewonuola Alase , Ian Carr , Miriam Wittmann , Paul Emery , George C Tsokos , Edward M Vital

GSDMB is increased in IBD and regulates epithelial restitution/repair independent of pyroptosis.

Cell

Avec: Nitish Rana , Giuseppe Privitera , Hannah C Kondolf , Katarzyna Bulek , Susana Lechuga , Carlo De Salvo , Daniele Corridoni , Agne Antanaviciute , Rebecca L Maywald , Alexander M Hurtado , Junjie Zhao , Emina H Huang , Xiaoxia Li , E Ricky Chan , Alison Simmons , Giorgos Bamias , Derek W Abbott , Jason D Heaney , Andrei I Ivanov , Theresa T Pizarro

Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs.

Nature communications

Avec: Praveen Weeratunga , Laura Denney , Joshua A Bull , Emmanouela Repapi , Martin Sergeant , Rachel Etherington , Chaitanya Vuppussetty , Gareth D H Turner , Colin Clelland , Jeongmin Woo , Amy Cross , Fadi Issa , Carlos Eduardo de Andrea , Ignacio Melero Bermejo , David Sims , Simon McGowan , Yasemin-Xiomara Zurke , David J Ahern , Eddie C Gamez , Justin Whalley , Duncan Richards , Paul Klenerman , Claudia Monaco , Irina A Udalova , Tao Dong , Agne Antanaviciute , Graham Ogg , Julian C Knight , Helen M Byrne , Stephen Taylor , Ling-Pei Ho

Bone Morphogenetic Protein Pathway Antagonism by Grem1 Regulates Epithelial Cell Fate in Intestinal Regeneration.

Gastroenterology

Avec: Martijn A J Koppens , Hayley Davis , Gabriel N Valbuena , Eoghan J Mulholland , Nadia Nasreddin , Mathilde Colombe , Agne Antanaviciute , Sujata Biswas , Matthias Friedrich , Lennard Lee , Auteur inconnu , Lai Mun Wang , Viktor H Koelzer , James E East , Alison Simmons , Douglas J Winton , Simon J Leedham

Spatiotemporal analysis of human intestinal development at single-cell resolution.

Cell

Avec: David Fawkner-Corbett , Agne Antanaviciute , Kaushal Parikh , Marta Jagielowicz , Ana Sousa Gerós , Tarun Gupta , Neil Ashley , Doran Khamis , Darren Fowler , Edward Morrissey , Chris Cunningham , Paul R V Johnson , Hashem Koohy , Alison Simmons

HLA-dependent variation in SARS-CoV-2 CD8

Immunology

Avec: Paul R Buckley , Chloe H Lee , Mariana Pereira Pinho , Rosana Ottakandathil Babu , Jeongmin Woo , Agne Antanaviciute , Alison Simmons , Graham Ogg , Hashem Koohy

Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens.

Briefings in bioinformatics

Avec: Paul R Buckley , Chloe H Lee , Ruichong Ma , Isaac Woodhouse , Jeongmin Woo , Vasily O Tsvetkov , Dmitrii S Shcherbinin , Agne Antanaviciute , Mikhail Shughay , Margarida Rei , Alison Simmons , Hashem Koohy

A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses.

Immunotherapy advances

Avec: Paul R Buckley , Chloe H Lee , Agne Antanaviciute , Alison Simmons , Hashem Koohy

Heterozygous

Journal of medical genetics

Avec: Ummey Hany , Christopher M Watson , Lu Liu , Claire E L Smith , Asmaa Harfoush , James A Poulter , Georgios Nikolopoulos , Richard Balmer , Catriona J Brown , Anesha Patel , Jenny Simmonds , Ruth Charlton , María Gabriela Acosta de Camargo , Helen D Rodd , Hussain Jafri , Agne Antanaviciute , Michelle Moffat , Maisoon Al-Jawad , Chris F Inglehearn , Alan J Mighell

Inflammatory Bowel Disease Through the Lens of Single-cell RNA-seq Technologies.

Inflammatory bowel diseases

Avec: Daniele Corridoni , Thomas Chapman , Agne Antanaviciute , Jack Satsangi , Alison Simmons

R-spondin 3 promotes stem cell recovery and epithelial regeneration in the colon.

Nature communications

Avec: Christine Harnack , Hilmar Berger , Agne Antanaviciute , Ramon Vidal , Sascha Sauer , Alison Simmons , Thomas F Meyer , Michael Sigal

Isolation of human fetal intestinal cells for single-cell RNA sequencing.

STAR protocols

Avec: David Fawkner-Corbett , Ana Sousa Gerós , Agne Antanaviciute , Alison Simmons

Multi-Modal Characterization of Monocytes in Idiopathic Pulmonary Fibrosis Reveals a Primed Type I Interferon Immune Phenotype.

Frontiers in immunology

Avec: Emily Fraser , Laura Denney , Agne Antanaviciute , Karl Blirando , Chaitanya Vuppusetty , Yuejuan Zheng , Emmanouela Repapi , Valentina Iotchkova , Stephen Taylor , Neil Ashley , Victoria St Noble , Rachel Benamore , Rachel Hoyles , Colin Clelland , Joseph M D Rastrick , Clare S Hardman , Nasullah K Alham , Rachel E Rigby , Alison Simmons , Jan Rehwinkel , Ling-Pei Ho

Dual RNA sequencing reveals dendritic cell reprogramming in response to typhoidal Salmonella invasion.

Communications biology

Avec: Anna Aulicino , Agne Antanaviciute , Joe Frost , Ana Sousa Geros , Esther Mellado , Moustafa Attar , Marta Jagielowicz , Philip Hublitz , Julia Sinz , Lorena Preciado-Llanes , Giorgio Napolitani , Rory Bowden , Hashem Koohy , Hal Drakesmith , Alison Simmons

Lymphatic endothelia stakeout cryptic stem cells.

Cell stem cell

Avec: Agne Antanaviciute , Anjali Kusumbe , Alison Simmons

Paracrine signalling by cardiac calcitonin controls atrial fibrogenesis and arrhythmia.

Nature

Avec: Lucia M Moreira , Abhijit Takawale , Mohit Hulsurkar , David A Menassa , Agne Antanaviciute , Satadru K Lahiri , Neelam Mehta , Neil Evans , Constantinos Psarros , Paul Robinson , Alexander J Sparrow , Marc-Antoine Gillis , Neil Ashley , Patrice Naud , Javier Barallobre-Barreiro , Konstantinos Theofilatos , Angela Lee , Mary Norris , Michele V Clarke , Patricia K Russell , Barbara Casadei , Shoumo Bhattacharya , Jeffrey D Zajac , Rachel A Davey , Martin Sirois , Adam Mead , Alison Simmons , Manuel Mayr , Rana Sayeed , George Krasopoulos , Charles Redwood , Keith M Channon , Jean-Claude Tardif , Xander H T Wehrens , Stanley Nattel , Svetlana Reilly

Targeting human plasmacytoid dendritic cells through BDCA2 prevents skin inflammation and fibrosis in a novel xenotransplant mouse model of scleroderma.

Annals of the rheumatic diseases

Avec: Rebecca L Ross , Clarissa Corinaldesi , Gemma Migneco , Ian M Carr , Agne Antanaviciute , Christopher W Wasson , Antonio Carriero , Jörg H W Distler , Steve Holmes , Yasser M El-Sherbiny , Clive S McKimmie , Francesco Del Galdo

Functionally impaired plasmacytoid dendritic cells and non-haematopoietic sources of type I interferon characterize human autoimmunity.

Nature communications

Avec: Antonios Psarras , Adewonuola Alase , Agne Antanaviciute , Ian M Carr , Md Yuzaiful Md Yusof , Miriam Wittmann , Paul Emery , George C Tsokos , Edward M Vital

Colonic epithelial cell diversity in health and inflammatory bowel disease.

Nature

Avec: Kaushal Parikh , Agne Antanaviciute , David Fawkner-Corbett , Marta Jagielowicz , Anna Aulicino , Christoffer Lagerholm , Simon Davis , James Kinchen , Hannah H Chen , Nasullah Khalid Alham , Neil Ashley , Errin Johnson , Philip Hublitz , Leyuan Bao , Joanna Lukomska , Rajinder Singh Andev , Elisabet Björklund , Benedikt M Kessler , Roman Fischer , Robert Goldin , Hashem Koohy , Alison Simmons

Single-cell atlas of colonic CD8

Nature medicine

Avec: Daniele Corridoni , Agne Antanaviciute , Tarun Gupta , David Fawkner-Corbett , Anna Aulicino , Marta Jagielowicz , Kaushal Parikh , Emmanouela Repapi , Steve Taylor , Dai Ishikawa , Ryo Hatano , Taketo Yamada , Wei Xin , Hubert Slawinski , Rory Bowden , Giorgio Napolitani , Oliver Brain , Chikao Morimoto , Hashem Koohy , Alison Simmons

Tracking in situ checkpoint inhibitor-bound target T cells in patients with checkpoint-induced colitis.

Cancer cell

Avec: Tarun Gupta , Agne Antanaviciute , Chloe Hyun-Jung Lee , Rosana Ottakandathil Babu , Anna Aulicino , Zoe Christoforidou , Paulina Siejka-Zielinska , Caitlin O'Brien-Ball , Hannah Chen , David Fawkner-Corbett , Ana Sousa Geros , Esther Bridges , Colleen McGregor , Nicole Cianci , Eve Fryer , Nasullah Khalid Alham , Marta Jagielowicz , Ana Mafalda Santos , Martin Fellermeyer , Simon J Davis , Kaushal Parikh , Vincent Cheung , Lulia Al-Hillawi , Sarah Sasson , Stephanie Slevin , Oliver Brain , Auteur inconnu , Ricardo A Fernandes , Hashem Koohy , Alison Simmons

Intelectin-1 binds and alters the localization of the mucus barrier-modifying bacterium Akkermansia muciniphila.

The Journal of experimental medicine

Avec: Juan D Matute , Jinzhi Duan , Magdalena B Flak , Paul Griebel , Jose A Tascon-Arcila , Shauni Doms , Thomas Hanley , Agne Antanaviciute , Jennifer Gundrum , Jessica L Mark Welch , Brandon Sit , Shabnam Abtahi , Gwenny M Fuhler , Joep Grootjans , Florian Tran , Stephanie T Stengel , James R White , Niklas Krupka , Dirk Haller , Simon Clare , Trevor D Lawley , Arthur Kaser , Alison Simmons , Jonathan N Glickman , Lynn Bry , Philip Rosenstiel , Gary Borisy , Matthew K Waldor , John F Baines , Jerrold R Turner , Richard S Blumberg

Réseau de co-auteurs

Alison Simmons 19 collaborations

Hashem Koohy 9 collaborations

David Fawkner-Corbett 5 collaborations

Marta Jagielowicz 5 collaborations

Chloe H Lee 4 collaborations

Paul R Buckley 4 collaborations

Daniele Corridoni 4 collaborations

Kaushal Parikh 4 collaborations

Neil Ashley 4 collaborations

Anna Aulicino 4 collaborations

Ian M Carr 3 collaborations

Emmanouela Repapi 3 collaborations

Jeongmin Woo 3 collaborations

Tarun Gupta 3 collaborations

Mariana Pereira Pinho 2 collaborations

Ricardo A Fernandes 2 collaborations

Katarzyna Bulek 2 collaborations

Junjie Zhao 2 collaborations

Nitish Rana 2 collaborations

Theresa T Pizarro 2 collaborations

Xiaoxia Li 2 collaborations

Antonios Psarras 2 collaborations

Adewonuola Alase 2 collaborations

Miriam Wittmann 2 collaborations

Paul Emery 2 collaborations

George C Tsokos 2 collaborations

Edward M Vital 2 collaborations

Laura Denney 2 collaborations

Colin Clelland 2 collaborations

Graham Ogg 2 collaborations

Stephen Taylor 2 collaborations

Ling-Pei Ho 2 collaborations

None None 2 collaborations

Ana Sousa Gerós 2 collaborations

Rosana Ottakandathil Babu 2 collaborations

Ana Sousa Geros 2 collaborations

Philip Hublitz 2 collaborations

Giorgio Napolitani 2 collaborations

Rory Bowden 2 collaborations

Nasullah Khalid Alham 2 collaborations

Oliver Brain 2 collaborations

Imeshi Wijetunga 1 collaboration

Laura E McVeigh 1 collaboration

Antonia Charalambous 1 collaboration

Amit Nair 1 collaboration

K Raj Prasad 1 collaboration

Nicola Ingram 1 collaboration

P Louise Coletta 1 collaboration

Jaesung Huh 1 collaboration

Myeongjun Jang 1 collaboration

Yun Liao 1 collaboration

Xing Chen 1 collaboration

Han Wang 1 collaboration

Wen Qian 1 collaboration

William A Miller-Little 1 collaboration

Shadi Swaidani 1 collaboration

Fangqiang Tang 1 collaboration

Belinda B Willard 1 collaboration

Keith McCrae 1 collaboration

Zizhen Kang 1 collaboration

George R Dubyak 1 collaboration

Fabio Cominelli 1 collaboration

Ian Carr 1 collaboration

Giuseppe Privitera 1 collaboration

Hannah C Kondolf 1 collaboration

Susana Lechuga 1 collaboration

Carlo De Salvo 1 collaboration

Rebecca L Maywald 1 collaboration

Alexander M Hurtado 1 collaboration

Emina H Huang 1 collaboration

E Ricky Chan 1 collaboration

Giorgos Bamias 1 collaboration

Derek W Abbott 1 collaboration

Jason D Heaney 1 collaboration

Andrei I Ivanov 1 collaboration

Praveen Weeratunga 1 collaboration

Joshua A Bull 1 collaboration

Martin Sergeant 1 collaboration

Rachel Etherington 1 collaboration

Chaitanya Vuppussetty 1 collaboration

Gareth D H Turner 1 collaboration

Amy Cross 1 collaboration

Fadi Issa 1 collaboration

Carlos Eduardo de Andrea 1 collaboration

Ignacio Melero Bermejo 1 collaboration

David Sims 1 collaboration

Simon McGowan 1 collaboration

Yasemin-Xiomara Zurke 1 collaboration

David J Ahern 1 collaboration

Eddie C Gamez 1 collaboration

Justin Whalley 1 collaboration

Duncan Richards 1 collaboration

Paul Klenerman 1 collaboration

Claudia Monaco 1 collaboration

Irina A Udalova 1 collaboration

Tao Dong 1 collaboration

Julian C Knight 1 collaboration

Helen M Byrne 1 collaboration

Martijn A J Koppens 1 collaboration

Hayley Davis 1 collaboration

Gabriel N Valbuena 1 collaboration

Eoghan J Mulholland 1 collaboration

Nadia Nasreddin 1 collaboration

Mathilde Colombe 1 collaboration

Sujata Biswas 1 collaboration

Matthias Friedrich 1 collaboration

Lennard Lee 1 collaboration

Lai Mun Wang 1 collaboration

Viktor H Koelzer 1 collaboration

James E East 1 collaboration

Douglas J Winton 1 collaboration

Simon J Leedham 1 collaboration

Doran Khamis 1 collaboration

Darren Fowler 1 collaboration

Edward Morrissey 1 collaboration

Chris Cunningham 1 collaboration

Paul R V Johnson 1 collaboration

Ruichong Ma 1 collaboration

Isaac Woodhouse 1 collaboration

Vasily O Tsvetkov 1 collaboration

Dmitrii S Shcherbinin 1 collaboration

Mikhail Shughay 1 collaboration

Margarida Rei 1 collaboration

Ummey Hany 1 collaboration

Christopher M Watson 1 collaboration

Lu Liu 1 collaboration

Claire E L Smith 1 collaboration

Asmaa Harfoush 1 collaboration

James A Poulter 1 collaboration

Georgios Nikolopoulos 1 collaboration

Richard Balmer 1 collaboration

Catriona J Brown 1 collaboration

Anesha Patel 1 collaboration

Jenny Simmonds 1 collaboration

Ruth Charlton 1 collaboration

María Gabriela Acosta de Camargo 1 collaboration

Helen D Rodd 1 collaboration

Hussain Jafri 1 collaboration

Michelle Moffat 1 collaboration

Maisoon Al-Jawad 1 collaboration

Chris F Inglehearn 1 collaboration

Alan J Mighell 1 collaboration

Thomas Chapman 1 collaboration

Jack Satsangi 1 collaboration

Christine Harnack 1 collaboration

Hilmar Berger 1 collaboration

Ramon Vidal 1 collaboration

Sascha Sauer 1 collaboration

Thomas F Meyer 1 collaboration

Michael Sigal 1 collaboration

Emily Fraser 1 collaboration

Karl Blirando 1 collaboration

Chaitanya Vuppusetty 1 collaboration

Yuejuan Zheng 1 collaboration

Valentina Iotchkova 1 collaboration

Victoria St Noble 1 collaboration

Rachel Benamore 1 collaboration

Rachel Hoyles 1 collaboration

Joseph M D Rastrick 1 collaboration

Clare S Hardman 1 collaboration

Nasullah K Alham 1 collaboration

Rachel E Rigby 1 collaboration

Jan Rehwinkel 1 collaboration

Joe Frost 1 collaboration

Esther Mellado 1 collaboration

Moustafa Attar 1 collaboration

Julia Sinz 1 collaboration

Lorena Preciado-Llanes 1 collaboration

Hal Drakesmith 1 collaboration

Anjali Kusumbe 1 collaboration

Lucia M Moreira 1 collaboration

Abhijit Takawale 1 collaboration

Mohit Hulsurkar 1 collaboration

David A Menassa 1 collaboration

Satadru K Lahiri 1 collaboration

Neelam Mehta 1 collaboration

Neil Evans 1 collaboration

Constantinos Psarros 1 collaboration

Paul Robinson 1 collaboration

Alexander J Sparrow 1 collaboration

Marc-Antoine Gillis 1 collaboration

Patrice Naud 1 collaboration

Javier Barallobre-Barreiro 1 collaboration

Konstantinos Theofilatos 1 collaboration

Angela Lee 1 collaboration

Mary Norris 1 collaboration

Michele V Clarke 1 collaboration

Patricia K Russell 1 collaboration

Barbara Casadei 1 collaboration

Shoumo Bhattacharya 1 collaboration

Jeffrey D Zajac 1 collaboration

Rachel A Davey 1 collaboration

Martin Sirois 1 collaboration

Adam Mead 1 collaboration

Manuel Mayr 1 collaboration

Rana Sayeed 1 collaboration

George Krasopoulos 1 collaboration

Charles Redwood 1 collaboration

Keith M Channon 1 collaboration

Jean-Claude Tardif 1 collaboration

Xander H T Wehrens 1 collaboration

Stanley Nattel 1 collaboration

Svetlana Reilly 1 collaboration

Rebecca L Ross 1 collaboration

Clarissa Corinaldesi 1 collaboration

Gemma Migneco 1 collaboration

Christopher W Wasson 1 collaboration

Antonio Carriero 1 collaboration

Jörg H W Distler 1 collaboration

Steve Holmes 1 collaboration

Yasser M El-Sherbiny 1 collaboration

Clive S McKimmie 1 collaboration

Francesco Del Galdo 1 collaboration

Md Yuzaiful Md Yusof 1 collaboration

Christoffer Lagerholm 1 collaboration

Simon Davis 1 collaboration

James Kinchen 1 collaboration

Hannah H Chen 1 collaboration

Errin Johnson 1 collaboration

Leyuan Bao 1 collaboration

Joanna Lukomska 1 collaboration

Rajinder Singh Andev 1 collaboration

Elisabet Björklund 1 collaboration

Benedikt M Kessler 1 collaboration

Roman Fischer 1 collaboration

Robert Goldin 1 collaboration

Steve Taylor 1 collaboration

Dai Ishikawa 1 collaboration

Ryo Hatano 1 collaboration

Taketo Yamada 1 collaboration

Wei Xin 1 collaboration

Hubert Slawinski 1 collaboration

Chikao Morimoto 1 collaboration

Chloe Hyun-Jung Lee 1 collaboration

Zoe Christoforidou 1 collaboration

Paulina Siejka-Zielinska 1 collaboration

Caitlin O'Brien-Ball 1 collaboration

Hannah Chen 1 collaboration

Esther Bridges 1 collaboration

Colleen McGregor 1 collaboration

Nicole Cianci 1 collaboration

Eve Fryer 1 collaboration

Ana Mafalda Santos 1 collaboration

Martin Fellermeyer 1 collaboration

Simon J Davis 1 collaboration

Vincent Cheung 1 collaboration

Lulia Al-Hillawi 1 collaboration

Sarah Sasson 1 collaboration

Stephanie Slevin 1 collaboration

Juan D Matute 1 collaboration

Jinzhi Duan 1 collaboration

Magdalena B Flak 1 collaboration

Paul Griebel 1 collaboration

Jose A Tascon-Arcila 1 collaboration

Shauni Doms 1 collaboration

Thomas Hanley 1 collaboration

Jennifer Gundrum 1 collaboration

Jessica L Mark Welch 1 collaboration

Brandon Sit 1 collaboration

Shabnam Abtahi 1 collaboration

Gwenny M Fuhler 1 collaboration

Joep Grootjans 1 collaboration

Florian Tran 1 collaboration

Stephanie T Stengel 1 collaboration

James R White 1 collaboration

Niklas Krupka 1 collaboration

Dirk Haller 1 collaboration

Simon Clare 1 collaboration

Trevor D Lawley 1 collaboration

Arthur Kaser 1 collaboration

Jonathan N Glickman 1 collaboration

Lynn Bry 1 collaboration

Philip Rosenstiel 1 collaboration

Gary Borisy 1 collaboration

Matthew K Waldor 1 collaboration

John F Baines 1 collaboration

Jerrold R Turner 1 collaboration

Richard S Blumberg 1 collaboration