Zoltan Simandi

Affiliations

Department of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA, USA; Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Publications (9)

Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation.

Cell genomics

Avec: Katelyn R Titus , Harshini Chandrashekar , Dominik Paquet , Jennifer E Phillips-Cremins

Cohesin-mediated loop anchors confine the locations of human replication origins.

Nature

Avec: Daniel J Emerson , Peiyao A Zhao , Ashley L Cook , R Jordan Barnett , Kyle N Klein , Dalila Saulebekova , Chunmin Ge , Linda Zhou , Miriam K Minsk , Katelyn R Titus , Weitao Wang , Wanfeng Gong , Di Zhang , Liyan Yang , Sergey V Venev , Johan H Gibcus , Hongbo Yang , Takayo Sasaki , Masato T Kanemaki , Feng Yue , Job Dekker , Chun-Long Chen , David M Gilbert , Jennifer E Phillips-Cremins

A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.

The Journal of experimental medicine

Avec: Andreas Patsalos , Laszlo Halasz , Miguel A Medina-Serpas , Wilhelm K Berger , Bence Daniel , Petros Tzerpos , Máté Kiss , Gergely Nagy , Cornelius Fischer , Tamas Varga , Laszlo Nagy

3D genome, on repeat: Higher-order folding principles of the heterochromatinized repetitive genome.

Cell

Avec: Spencer A Haws , R Jordan Barnett , Jennifer E Phillips-Cremins

Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.

Nucleic acids research

Avec: Attila Horvath , Bence Daniel , Lajos Szeles , Ixchelt Cuaranta-Monroy , Zsolt Czimmerer , Lilla Ozgyin , Laszlo Steiner , Mate Kiss , Szilard Poliska , Nikolas Giannakis , Emanuele Raineri , Ivo G Gut , Benedek Nagy , Laszlo Nagy

Agonist binding directs dynamic competition among nuclear receptors for heterodimerization with retinoid X receptor.

The Journal of biological chemistry

Avec: Lina Fadel , Bálint Rehó , Julianna Volkó , Dóra Bojcsuk , Zsuzsanna Kolostyák , Gergely Nagy , Gabriele Müller , Éva Hegedüs , Gábor Szabó , Katalin Tóth , Laszlo Nagy , György Vámosi

Diet-dependent natriuretic peptide receptor C expression in adipose tissue is mediated by PPARγ via long-range distal enhancers.

The Journal of biological chemistry

Avec: Fubiao Shi , Laszlo Nagy , Sheila Collins

Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation.

bioRxiv : the preprint server for biology

Avec: Katelyn R Titus , Harshini Chandrashekar , Dominik Paquet , Jennifer E Phillips-Cremins

A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations.

bioRxiv : the preprint server for biology

Avec: Harshini Chandrashekar , Heesun Choi , Han-Seul Ryu , Abraham J Waldman , Alexandria Nikish , Srikar S Muppidi , Wanfeng Gong , Dominik Paquet , Jennifer E Phillips-Cremins

Réseau de co-auteurs

Jennifer E Phillips-Cremins 5 collaborations

Laszlo Nagy 4 collaborations

Katelyn R Titus 3 collaborations

Harshini Chandrashekar 3 collaborations

Dominik Paquet 3 collaborations

R Jordan Barnett 2 collaborations

Wanfeng Gong 2 collaborations

Bence Daniel 2 collaborations

Gergely Nagy 2 collaborations

Daniel J Emerson 1 collaboration

Peiyao A Zhao 1 collaboration

Ashley L Cook 1 collaboration

Kyle N Klein 1 collaboration

Dalila Saulebekova 1 collaboration

Chunmin Ge 1 collaboration

Linda Zhou 1 collaboration

Miriam K Minsk 1 collaboration

Weitao Wang 1 collaboration

Di Zhang 1 collaboration

Liyan Yang 1 collaboration

Sergey V Venev 1 collaboration

Johan H Gibcus 1 collaboration

Hongbo Yang 1 collaboration

Takayo Sasaki 1 collaboration

Masato T Kanemaki 1 collaboration

Feng Yue 1 collaboration

Job Dekker 1 collaboration

Chun-Long Chen 1 collaboration

David M Gilbert 1 collaboration

Andreas Patsalos 1 collaboration

Laszlo Halasz 1 collaboration

Miguel A Medina-Serpas 1 collaboration

Wilhelm K Berger 1 collaboration

Petros Tzerpos 1 collaboration

Máté Kiss 1 collaboration

Cornelius Fischer 1 collaboration

Tamas Varga 1 collaboration

Spencer A Haws 1 collaboration

Attila Horvath 1 collaboration

Lajos Szeles 1 collaboration

Ixchelt Cuaranta-Monroy 1 collaboration

Zsolt Czimmerer 1 collaboration

Lilla Ozgyin 1 collaboration

Laszlo Steiner 1 collaboration

Mate Kiss 1 collaboration

Szilard Poliska 1 collaboration

Nikolas Giannakis 1 collaboration

Emanuele Raineri 1 collaboration

Ivo G Gut 1 collaboration

Benedek Nagy 1 collaboration

Lina Fadel 1 collaboration

Bálint Rehó 1 collaboration

Julianna Volkó 1 collaboration

Dóra Bojcsuk 1 collaboration

Zsuzsanna Kolostyák 1 collaboration

Gabriele Müller 1 collaboration

Éva Hegedüs 1 collaboration

Gábor Szabó 1 collaboration

Katalin Tóth 1 collaboration

György Vámosi 1 collaboration

Fubiao Shi 1 collaboration

Sheila Collins 1 collaboration

Heesun Choi 1 collaboration

Han-Seul Ryu 1 collaboration

Abraham J Waldman 1 collaboration

Alexandria Nikish 1 collaboration

Srikar S Muppidi 1 collaboration