Ulrich Zachariae

Affiliations

Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK; Physics, School of Science and Engineering, University of Dundee, Nethergate, Dundee DD1 4NH, UK. Electronic address: u.zachariae@dundee.ac.uk.

Publications (10)

An antibiotic-resistance conferring mutation in a neisserial porin: Structure, ion flux, and ampicillin binding.

Biochimica et biophysica acta. Biomembranes

Avec: Annika Bartsch , Callum M Ives , Christof Kattner , Florian Pein , Manuel Diehn , Mikio Tanabe , Axel Munk , Claudia Steinem , Salomé Llabrés

Accurate prediction of dynamic protein-ligand binding using P-score ranking.

Journal of computational chemistry

Avec: Peter E G F Ibrahim , Fabio Zuccotto , Ian Gilbert , Mike Bodkin

Fast prediction of antibiotic permeability through membrane channels using Brownian dynamics.

Biophysical journal

Avec: Abhishek Acharya , Kalyanashis Jana , Dominik Gurvic , Ulrich Kleinekathöfer

Positively selected modifications in the pore of TbAQP2 allow pentamidine to enter

eLife

Avec: Ali H Alghamdi , Jane C Munday , Gustavo Daniel Campagnaro , Dominik Gurvic , Fredrik Svensson , Chinyere E Okpara , Arvind Kumar , Juan Quintana , Maria Esther Martin Abril , Patrik Milić , Laura Watson , Daniel Paape , Luca Settimo , Anna Dimitriou , Joanna Wielinska , Graeme Smart , Laura F Anderson , Christopher M Woodley , Siu Pui Ying Kelly , Hasan Ms Ibrahim , Fabian Hulpia , Mohammed I Al-Salabi , Anthonius A Eze , Teresa Sprenger , Ibrahim A Teka , Simon Gudin , Simone Weyand , Mark Field , Christophe Dardonville , Richard R Tidwell , Mark Carrington , Paul O'Neill , David W Boykin , Harry P De Koning

High-resolution experimental and computational electrophysiology reveals weak β-lactam binding events in the porin PorB.

Scientific reports

Avec: Annika Bartsch , Salomé Llabrés , Florian Pein , Christof Kattner , Markus Schön , Manuel Diehn , Mikio Tanabe , Axel Munk , Claudia Steinem

The Persistent Question of Potassium Channel Permeation Mechanisms.

Journal of molecular biology

Avec: Andrei Mironenko , Bert L de Groot , Wojciech Kopec

GPCRmd uncovers the dynamics of the 3D-GPCRome.

Nature methods

Avec: Ismael Rodríguez-Espigares , Mariona Torrens-Fontanals , Johanna K S Tiemann , David Aranda-García , Juan Manuel Ramírez-Anguita , Tomasz Maciej Stepniewski , Nathalie Worp , Alejandro Varela-Rial , Adrián Morales-Pastor , Brian Medel-Lacruz , Gáspár Pándy-Szekeres , Eduardo Mayol , Toni Giorgino , Jens Carlsson , Xavier Deupi , Slawomir Filipek , Marta Filizola , José Carlos Gómez-Tamayo , Angel Gonzalez , Hugo Gutiérrez-de-Terán , Mireia Jiménez-Rosés , Willem Jespers , Jon Kapla , George Khelashvili , Peter Kolb , Dorota Latek , Maria Marti-Solano , Pierre Matricon , Minos-Timotheos Matsoukas , Przemyslaw Miszta , Mireia Olivella , Laura Perez-Benito , Davide Provasi , Santiago Ríos , Iván R Torrecillas , Jessica Sallander , Agnieszka Sztyler , Silvana Vasile , Harel Weinstein , Peter W Hildebrand , Gianni De Fabritiis , Ferran Sanz , David E Gloriam , Arnau Cordomi , Ramon Guixà-González , Jana Selent

A two-lane mechanism for selective biological ammonium transport.

eLife

Avec: Gordon Williamson , Giulia Tamburrino , Adriana Bizior , Mélanie Boeckstaens , Gaëtan Dias Mirandela , Marcus G Bage , Andrei Pisliakov , Callum M Ives , Eilidh Terras , Paul A Hoskisson , Anna Maria Marini , Arnaud Javelle

Coexistence of Ammonium Transporter and Channel Mechanisms in Amt-Mep-Rh Twin-His Variants Impairs the Filamentation Signaling Capacity of Fungal Mep2 Transceptors.

mBio

Avec: Gordon Williamson , Ana Sofia Brito , Adriana Bizior , Giulia Tamburrino , Gaëtan Dias Mirandela , Thomas Harris , Paul A Hoskisson , Anna Maria Marini , Mélanie Boeckstaens , Arnaud Javelle

A hydrophobic funnel governs monovalent cation selectivity in the ion channel TRPM5.

Biophysical journal

Avec: Callum M Ives , Alp Tegin Şahin , Neil J Thomson ,

Réseau de co-auteurs

Callum M Ives 3 collaborations

Annika Bartsch 2 collaborations

Christof Kattner 2 collaborations

Florian Pein 2 collaborations

Manuel Diehn 2 collaborations

Mikio Tanabe 2 collaborations

Axel Munk 2 collaborations

Claudia Steinem 2 collaborations

Salomé Llabrés 2 collaborations

Dominik Gurvic 2 collaborations

Gordon Williamson 2 collaborations

Giulia Tamburrino 2 collaborations

Adriana Bizior 2 collaborations

Mélanie Boeckstaens 2 collaborations

Gaëtan Dias Mirandela 2 collaborations

Paul A Hoskisson 2 collaborations

Anna Maria Marini 2 collaborations

Arnaud Javelle 2 collaborations

Peter E G F Ibrahim 1 collaboration

Fabio Zuccotto 1 collaboration

Ian Gilbert 1 collaboration

Mike Bodkin 1 collaboration

Abhishek Acharya 1 collaboration

Kalyanashis Jana 1 collaboration

Ulrich Kleinekathöfer 1 collaboration

Ali H Alghamdi 1 collaboration

Jane C Munday 1 collaboration

Gustavo Daniel Campagnaro 1 collaboration

Fredrik Svensson 1 collaboration

Chinyere E Okpara 1 collaboration

Arvind Kumar 1 collaboration

Juan Quintana 1 collaboration

Maria Esther Martin Abril 1 collaboration

Patrik Milić 1 collaboration

Laura Watson 1 collaboration

Daniel Paape 1 collaboration

Luca Settimo 1 collaboration

Anna Dimitriou 1 collaboration

Joanna Wielinska 1 collaboration

Graeme Smart 1 collaboration

Laura F Anderson 1 collaboration

Christopher M Woodley 1 collaboration

Siu Pui Ying Kelly 1 collaboration

Hasan Ms Ibrahim 1 collaboration

Fabian Hulpia 1 collaboration

Mohammed I Al-Salabi 1 collaboration

Anthonius A Eze 1 collaboration

Teresa Sprenger 1 collaboration

Ibrahim A Teka 1 collaboration

Simon Gudin 1 collaboration

Simone Weyand 1 collaboration

Mark Field 1 collaboration

Christophe Dardonville 1 collaboration

Richard R Tidwell 1 collaboration

Mark Carrington 1 collaboration

Paul O'Neill 1 collaboration

David W Boykin 1 collaboration

Harry P De Koning 1 collaboration

Markus Schön 1 collaboration

Andrei Mironenko 1 collaboration

Bert L de Groot 1 collaboration

Wojciech Kopec 1 collaboration

Ismael Rodríguez-Espigares 1 collaboration

Mariona Torrens-Fontanals 1 collaboration

Johanna K S Tiemann 1 collaboration

David Aranda-García 1 collaboration

Juan Manuel Ramírez-Anguita 1 collaboration

Tomasz Maciej Stepniewski 1 collaboration

Nathalie Worp 1 collaboration

Alejandro Varela-Rial 1 collaboration

Adrián Morales-Pastor 1 collaboration

Brian Medel-Lacruz 1 collaboration

Gáspár Pándy-Szekeres 1 collaboration

Eduardo Mayol 1 collaboration

Toni Giorgino 1 collaboration

Jens Carlsson 1 collaboration

Xavier Deupi 1 collaboration

Slawomir Filipek 1 collaboration

Marta Filizola 1 collaboration

José Carlos Gómez-Tamayo 1 collaboration

Angel Gonzalez 1 collaboration

Hugo Gutiérrez-de-Terán 1 collaboration

Mireia Jiménez-Rosés 1 collaboration

Willem Jespers 1 collaboration

Jon Kapla 1 collaboration

George Khelashvili 1 collaboration

Peter Kolb 1 collaboration

Dorota Latek 1 collaboration

Maria Marti-Solano 1 collaboration

Pierre Matricon 1 collaboration

Minos-Timotheos Matsoukas 1 collaboration

Przemyslaw Miszta 1 collaboration

Mireia Olivella 1 collaboration

Laura Perez-Benito 1 collaboration

Davide Provasi 1 collaboration

Santiago Ríos 1 collaboration

Iván R Torrecillas 1 collaboration

Jessica Sallander 1 collaboration

Agnieszka Sztyler 1 collaboration

Silvana Vasile 1 collaboration

Harel Weinstein 1 collaboration

Peter W Hildebrand 1 collaboration

Gianni De Fabritiis 1 collaboration

Ferran Sanz 1 collaboration

David E Gloriam 1 collaboration

Arnau Cordomi 1 collaboration

Ramon Guixà-González 1 collaboration

Jana Selent 1 collaboration

Marcus G Bage 1 collaboration

Andrei Pisliakov 1 collaboration

Eilidh Terras 1 collaboration

Ana Sofia Brito 1 collaboration

Thomas Harris 1 collaboration

Alp Tegin Şahin 1 collaboration

Neil J Thomson 1 collaboration