Spyros Oikonomopoulos

Affiliations

Department of Human Genetics, McGill University and Genome Quebec Innovation Centre, McGill University, Montréal, QC, Canada.

Publications (10)

Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS.

Nature communications

Avec: Xue Wu , Cristina M Niculite , Mihai Bogdan Preda , Annalisa Rossi , Toma Tebaldi , Elena Butoi , Mattie K White , Oana M Tudoran , Daniela N Petrusca , Amber S Jannasch , William P Bone , Xingyue Zong , Fang Fang , Alexandrina Burlacu , Michelle T Paulsen , Brad A Hancock , George E Sandusky , Sumegha Mitra , Melissa L Fishel , Aaron Buechlein , Cristina Ivan , Myriam Gorospe , Amber Mosley , Milan Radovich , Utpal P Davé , Jiannis Ragoussis , Kenneth P Nephew , Bernard Mari , Alan McIntyre , Heiko Konig , Mats Ljungman , Diana L Cousminer , Paolo Macchi , Mircea Ivan

Evolution of naturally arising SARS-CoV-2 defective interfering particles.

Communications biology

Avec: Samer Girgis , Zaikun Xu , Alla D Fedorova , Egor P Tchesnokov , Calvin J Gordon , T Martin Schmeing , Matthias Götte , Nahum Sonenberg , Pavel V Baranov , Jiannis Ragoussis , Tom C Hobman , Jerry Pelletier

Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function.

GigaScience

Avec: Kate Reddington , David Eccles , Justin O'Grady , Devin M Drown , Lars Hestbjerg Hansen , Tue Kjærgaard Nielsen , Anne-Lise Ducluzeau , Richard M Leggett , Darren Heavens , Ned Peel , Terrance P Snutch , Anthony Bayega , Spyridon Oikonomopoulos , Ioannis Ragoussis , Thomas Barry , Eric van der Helm , Dino Jolic , Hollian Richardson , Hans Jansen , John R Tyson , Miten Jain , Bonnie L Brown

The genetic landscape of choroid plexus tumors in children and adults.

Neuro-oncology

Avec: Christian Thomas , Patrick Soschinski , Melissa Zwaig , Spyridon Oikonomopoulos , Konstantin Okonechnikov , Kristian W Pajtler , Martin Sill , Leonille Schweizer , Arend Koch , Julia Neumann , Ulrich Schüller , Felix Sahm , Laurèl Rauschenbach , Kathy Keyvani , Martin Proescholdt , Markus J Riemenschneider , Jochen Segewiß , Christian Ruckert , Oliver Grauer , Camelia-Maria Monoranu , Katrin Lamszus , Annarita Patrizi , Uwe Kordes , Reiner Siebert , Marcel Kool , Jiannis Ragoussis , William D Foulkes , Werner Paulus , Barbara Rivera , Martin Hasselblatt

Publisher Correction: Regulation of cellular sterol homeostasis by the oxygen responsive noncoding RNA lincNORS.

Nature communications

Avec: Xue Wu , Cristina M Niculite , Mihai Bogdan Preda , Annalisa Rossi , Toma Tebaldi , Elena Butoi , Mattie K White , Oana M Tudoran , Daniela N Petrusca , Amber S Jannasch , William P Bone , Xingyue Zong , Fang Fang , Alexandrina Burlacu , Michelle T Paulsen , Brad A Hancock , George E Sandusky , Sumegha Mitra , Melissa L Fishel , Aaron Buechlein , Cristina Ivan , Myriam Gorospe , Amber Mosley , Milan Radovich , Utpal P Davé , Jiannis Ragoussis , Kenneth P Nephew , Bernard Mari , Alan McIntyre , Heiko Konig , Mats Ljungman , Diana L Cousminer , Paolo Macchi , Mircea Ivan

Improved Nanopore full-length cDNA sequencing by PCR-suppression.

Frontiers in genetics

Avec: Anthony Bayega , Yu Chang Wang , Jiannis Ragoussis

Methodologies for Transcript Profiling Using Long-Read Technologies.

Frontiers in genetics

Avec: Anthony Bayega , Somayyeh Fahiminiya , Haig Djambazian , Pierre Berube , Jiannis Ragoussis

De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly.

BMC genomics

Avec: Anthony Bayega , Haig Djambazian , Konstantina T Tsoumani , Maria-Eleni Gregoriou , Efthimia Sagri , Eleni Drosopoulou , Penelope Mavragani-Tsipidou , Kristina Giorda , George Tsiamis , Kostas Bourtzis , Spyridon Oikonomopoulos , Ken Dewar , Deanna M Church , Alexie Papanicolaou , Kostas D Mathiopoulos , Jiannis Ragoussis

Nanopore long-read RNA-seq and absolute quantification delineate transcription dynamics in early embryo development of an insect pest.

Scientific reports

Avec: Anthony Bayega , Maria-Eleni Gregoriou , Konstantina T Tsoumani , Antonis Giakountis , Yu Chang Wang , Kostas D Mathiopoulos , Jiannis Ragoussis

Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis.

bioRxiv : the preprint server for biology

Avec: Michael K Strasser , David L Gibbs , Philippe Gascard , Joanna Bons , John W Hickey , Christian M Schürch , Yuqi Tan , Sarah Black , Pauline Chu , Alican Ozkan , Nathan Basisty , Veena Sangwan , Jacob Rose , Samah Shah , Sophie Camilleri-Broet , Pierre-Oliver Fiset , Nicolas Bertos , Julie Berube , Haig Djambazian , Rui Li , Spyridon Oikonomopoulos , Daffolyn Rachael Fels-Elliott , Sarah Vernovsky , Elee Shimshoni , Deborah Collyar , Ann Russell , Ioannis Ragoussis , Matthew Stachler , James R Goldenring , Stuart McDonald , Donald E Ingber , Birgit Schilling , Garry P Nolan , Thea D Tlsty , Sui Huang , Lorenzo E Ferri

Réseau de co-auteurs

Jiannis Ragoussis 8 collaborations

Anthony Bayega 5 collaborations

Spyridon Oikonomopoulos 4 collaborations

Haig Djambazian 3 collaborations

Xue Wu 2 collaborations

Cristina M Niculite 2 collaborations

Mihai Bogdan Preda 2 collaborations

Annalisa Rossi 2 collaborations

Toma Tebaldi 2 collaborations

Elena Butoi 2 collaborations

Mattie K White 2 collaborations

Oana M Tudoran 2 collaborations

Daniela N Petrusca 2 collaborations

Amber S Jannasch 2 collaborations

William P Bone 2 collaborations

Xingyue Zong 2 collaborations

Fang Fang 2 collaborations

Alexandrina Burlacu 2 collaborations

Michelle T Paulsen 2 collaborations

Brad A Hancock 2 collaborations

George E Sandusky 2 collaborations

Sumegha Mitra 2 collaborations

Melissa L Fishel 2 collaborations

Aaron Buechlein 2 collaborations

Cristina Ivan 2 collaborations

Myriam Gorospe 2 collaborations

Amber Mosley 2 collaborations

Milan Radovich 2 collaborations

Utpal P Davé 2 collaborations

Kenneth P Nephew 2 collaborations

Bernard Mari 2 collaborations

Alan McIntyre 2 collaborations

Heiko Konig 2 collaborations

Mats Ljungman 2 collaborations

Diana L Cousminer 2 collaborations

Paolo Macchi 2 collaborations

Mircea Ivan 2 collaborations

Ioannis Ragoussis 2 collaborations

Yu Chang Wang 2 collaborations

Konstantina T Tsoumani 2 collaborations

Maria-Eleni Gregoriou 2 collaborations

Kostas D Mathiopoulos 2 collaborations

Samer Girgis 1 collaboration

Zaikun Xu 1 collaboration

Alla D Fedorova 1 collaboration

Egor P Tchesnokov 1 collaboration

Calvin J Gordon 1 collaboration

T Martin Schmeing 1 collaboration

Matthias Götte 1 collaboration

Nahum Sonenberg 1 collaboration

Pavel V Baranov 1 collaboration

Tom C Hobman 1 collaboration

Jerry Pelletier 1 collaboration

Kate Reddington 1 collaboration

David Eccles 1 collaboration

Justin O'Grady 1 collaboration

Devin M Drown 1 collaboration

Lars Hestbjerg Hansen 1 collaboration

Tue Kjærgaard Nielsen 1 collaboration

Anne-Lise Ducluzeau 1 collaboration

Richard M Leggett 1 collaboration

Darren Heavens 1 collaboration

Ned Peel 1 collaboration

Terrance P Snutch 1 collaboration

Thomas Barry 1 collaboration

Eric van der Helm 1 collaboration

Dino Jolic 1 collaboration

Hollian Richardson 1 collaboration

Hans Jansen 1 collaboration

John R Tyson 1 collaboration

Miten Jain 1 collaboration

Bonnie L Brown 1 collaboration

Christian Thomas 1 collaboration

Patrick Soschinski 1 collaboration

Melissa Zwaig 1 collaboration

Konstantin Okonechnikov 1 collaboration

Kristian W Pajtler 1 collaboration

Martin Sill 1 collaboration

Leonille Schweizer 1 collaboration

Arend Koch 1 collaboration

Julia Neumann 1 collaboration

Ulrich Schüller 1 collaboration

Felix Sahm 1 collaboration

Laurèl Rauschenbach 1 collaboration

Kathy Keyvani 1 collaboration

Martin Proescholdt 1 collaboration

Markus J Riemenschneider 1 collaboration

Jochen Segewiß 1 collaboration

Christian Ruckert 1 collaboration

Oliver Grauer 1 collaboration

Camelia-Maria Monoranu 1 collaboration

Katrin Lamszus 1 collaboration

Annarita Patrizi 1 collaboration

Uwe Kordes 1 collaboration

Reiner Siebert 1 collaboration

Marcel Kool 1 collaboration

William D Foulkes 1 collaboration

Werner Paulus 1 collaboration

Barbara Rivera 1 collaboration

Martin Hasselblatt 1 collaboration

Somayyeh Fahiminiya 1 collaboration

Pierre Berube 1 collaboration

Efthimia Sagri 1 collaboration

Eleni Drosopoulou 1 collaboration

Penelope Mavragani-Tsipidou 1 collaboration

Kristina Giorda 1 collaboration

George Tsiamis 1 collaboration

Kostas Bourtzis 1 collaboration

Ken Dewar 1 collaboration

Deanna M Church 1 collaboration

Alexie Papanicolaou 1 collaboration

Antonis Giakountis 1 collaboration

Michael K Strasser 1 collaboration

David L Gibbs 1 collaboration

Philippe Gascard 1 collaboration

Joanna Bons 1 collaboration

John W Hickey 1 collaboration

Christian M Schürch 1 collaboration

Yuqi Tan 1 collaboration

Sarah Black 1 collaboration

Pauline Chu 1 collaboration

Alican Ozkan 1 collaboration

Nathan Basisty 1 collaboration

Veena Sangwan 1 collaboration

Jacob Rose 1 collaboration

Samah Shah 1 collaboration

Sophie Camilleri-Broet 1 collaboration

Pierre-Oliver Fiset 1 collaboration

Nicolas Bertos 1 collaboration

Julie Berube 1 collaboration

Rui Li 1 collaboration

Daffolyn Rachael Fels-Elliott 1 collaboration

Sarah Vernovsky 1 collaboration

Elee Shimshoni 1 collaboration

Deborah Collyar 1 collaboration

Ann Russell 1 collaboration

Matthew Stachler 1 collaboration

James R Goldenring 1 collaboration

Stuart McDonald 1 collaboration

Donald E Ingber 1 collaboration

Birgit Schilling 1 collaboration

Garry P Nolan 1 collaboration

Thea D Tlsty 1 collaboration

Sui Huang 1 collaboration

Lorenzo E Ferri 1 collaboration