Ruth Isserlin

Affiliations

The Donnelly Centre, University of Toronto, Toronto, ON, Canada.

ORCID: http://orcid.org/0000-0002-6805-2080

Publications (10)

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.

Nature protocols

Avec: Jüri Reimand , Veronique Voisin , Mike Kucera , Christian Tannus-Lopes , Asha Rostamianfar , Lina Wadi , Mona Meyer , Jeff Wong , Changjiang Xu , Daniele Merico , Gary D Bader

Bmi1 regulates human glioblastoma stem cells through activation of differential gene networks in CD133+ brain tumor initiating cells.

Journal of neuro-oncology

Avec: Parvez Vora , Mathieu Seyfrid , Chitra Venugopal , Maleeha A Qazi , Sabra Salim , Minomi Subapanditha , Erin O'Farrell , Sujeivan Mahendram , Mohini Singh , David Bakhshinyan , Chirayu Chokshi , Nicole McFarlane , Anna Dvorkin-Gheva , Kevin R Brown , Naresh Murty , Jason Moffat , Gary D Bader , Sheila K Singh

netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks.

F1000Research

Avec: Shraddha Pai , Philipp Weber , Hussam Kaka , Shirley Hui , Muhammad Ahmad Shah , Luca Giudice , Rosalba Giugno , Anne Krogh Nøhr , Jan Baumbach , Gary D Bader

Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering.

eLife

Avec: Maria Abou Chakra , Thinh N Tran , Gary D Bader

netDx: interpretable patient classification using integrated patient similarity networks.

Molecular systems biology

Avec: Shraddha Pai , Shirley Hui , Muhammad A Shah , Hussam Kaka , Gary D Bader

The Relative Contributions of Cell-Dependent Cortical Microcircuit Aging to Cognition and Anxiety.

Biological psychiatry

Avec: Rammohan Shukla , Thomas D Prevot , Leon French , Brad R Rocco , Mounira Banasr , Gary D Bader , Etienne Sibille

RCy3: Network biology using Cytoscape from within R.

F1000Research

Avec: Julia A Gustavsen , Shraddha Pai , Barry Demchak , Alexander R Pico

Single-cell transcriptomic profiling of the aging mouse brain.

Nature neuroscience

Avec: Methodios Ximerakis , Scott L Lipnick , Brendan T Innes , Sean K Simmons , Xian Adiconis , Danielle Dionne , Brittany A Mayweather , Lan Nguyen , Zachary Niziolek , Ceren Ozek , Vincent L Butty , Sean M Buchanan , Stuart S Levine , Aviv Regev , Gary D Bader , Joshua Z Levin , Lee L Rubin

Distinct DNA methylation patterns associated with treatment resistance in metastatic castration resistant prostate cancer.

Scientific reports

Avec: Madonna R Peter , Misha Bilenky , Alastair Davies , Gary D Bader , Neil E Fleshner , Martin Hirst , Amina Zoubeidi , Bharati Bapat

Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression.

Clinical epigenetics

Avec: Shivani Kamdar , Theodorus Van der Kwast , Alexandre R Zlotta , Gary D Bader , Neil E Fleshner , Bharati Bapat

Réseau de co-auteurs

Gary D Bader 9 collaborations

Shraddha Pai 3 collaborations

Hussam Kaka 2 collaborations

Shirley Hui 2 collaborations

Neil E Fleshner 2 collaborations

Bharati Bapat 2 collaborations

Jüri Reimand 1 collaboration

Veronique Voisin 1 collaboration

Mike Kucera 1 collaboration

Christian Tannus-Lopes 1 collaboration

Asha Rostamianfar 1 collaboration

Lina Wadi 1 collaboration

Mona Meyer 1 collaboration

Jeff Wong 1 collaboration

Changjiang Xu 1 collaboration

Daniele Merico 1 collaboration

Parvez Vora 1 collaboration

Mathieu Seyfrid 1 collaboration

Chitra Venugopal 1 collaboration

Maleeha A Qazi 1 collaboration

Sabra Salim 1 collaboration

Minomi Subapanditha 1 collaboration

Erin O'Farrell 1 collaboration

Sujeivan Mahendram 1 collaboration

Mohini Singh 1 collaboration

David Bakhshinyan 1 collaboration

Chirayu Chokshi 1 collaboration

Nicole McFarlane 1 collaboration

Anna Dvorkin-Gheva 1 collaboration

Kevin R Brown 1 collaboration

Naresh Murty 1 collaboration

Jason Moffat 1 collaboration

Sheila K Singh 1 collaboration

Philipp Weber 1 collaboration

Muhammad Ahmad Shah 1 collaboration

Luca Giudice 1 collaboration

Rosalba Giugno 1 collaboration

Anne Krogh Nøhr 1 collaboration

Jan Baumbach 1 collaboration

Maria Abou Chakra 1 collaboration

Thinh N Tran 1 collaboration

Muhammad A Shah 1 collaboration

Rammohan Shukla 1 collaboration

Thomas D Prevot 1 collaboration

Leon French 1 collaboration

Brad R Rocco 1 collaboration

Mounira Banasr 1 collaboration

Etienne Sibille 1 collaboration

Julia A Gustavsen 1 collaboration

Barry Demchak 1 collaboration

Alexander R Pico 1 collaboration

Methodios Ximerakis 1 collaboration

Scott L Lipnick 1 collaboration

Brendan T Innes 1 collaboration

Sean K Simmons 1 collaboration

Xian Adiconis 1 collaboration

Danielle Dionne 1 collaboration

Brittany A Mayweather 1 collaboration

Lan Nguyen 1 collaboration

Zachary Niziolek 1 collaboration

Ceren Ozek 1 collaboration

Vincent L Butty 1 collaboration

Sean M Buchanan 1 collaboration

Stuart S Levine 1 collaboration

Aviv Regev 1 collaboration

Joshua Z Levin 1 collaboration

Lee L Rubin 1 collaboration

Madonna R Peter 1 collaboration

Misha Bilenky 1 collaboration

Alastair Davies 1 collaboration

Martin Hirst 1 collaboration

Amina Zoubeidi 1 collaboration

Shivani Kamdar 1 collaboration

Theodorus Van der Kwast 1 collaboration

Alexandre R Zlotta 1 collaboration