Reta Birhanu Kitata

Publications (15)

Robust collection and processing for label-free single voxel proteomics.

bioRxiv : the preprint server for biology

Avec: Marija Velickovic , Zhangyang Xu , Rui Zhao , David Scholten , Rosalie K Chu , Daniel J Orton , William B Chrisler , Jeremy V Mathews , Paul D Piehowski , Tao Liu , Richard D Smith , Huiping Liu , Clive H Wasserfall , Chia-Feng Tsai , Tujin Shi

Robust Surfactant-Assisted One-Pot Sample Preparation for Label-Free Single-Cell and Nanoscale Proteomics.

Methods in molecular biology (Clifton, N.J.)

Avec: Zhangyang Xu , Rongge Zou , Nina C Horn , Tujin Shi

Sample Size-Comparable Spectral Library Enhances Data-Independent Acquisition-Based Proteome Coverage of Low-Input Cells.

Analytical chemistry

Avec: Asad Ali Siyal , Eric Sheng-Wen Chen , Hsin-Ju Chan , Jhih-Ci Yang , Hsiung-Lin Tu , Yu-Ju Chen

Computational ranking-assisted identification of Plexin-B2 in homotypic and heterotypic clustering of circulating tumor cells in breast cancer metastasis.

bioRxiv : the preprint server for biology

Avec: Emma Schuster , Nurmaa Dashzeveg , Yuzhi Jia , Kibria Golam , Tong Zhang , Andrew Hoffman , Youbin Zhang , Chunlei Zheng , Erika Ramos , Rokana Taftaf , Lamiaa El- Shennawy , David Scholten , Reta B Kitata , Valery Adorno-Cruz , Carolina Reduzzi , Sabina Spahija , Rong Xu , Kalliopi P Siziopikou , Leonidas C Platanias , Ami Shah , William J Gradishar , Massimo Cristofanilli , Chia-Feng Tsai , Tujin Shi , Huiping Liu

In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum.

Journal of proteome research

Avec: Komal Abhange , Jie Zhang , Yi-Ting Wang , Matthew J Gaffrey , Tao Liu , Valerie Gunchick , Valerie Khaykin , Vaibhav Sahai , Kyle C Cuneo , Neehar D Parikh , Tujin Shi , David M Lubman

Streamlined single-cell proteomics by an integrated microfluidic chip and data-independent acquisition mass spectrometry.

Nature communications

Avec: Sofani Tafesse Gebreyesus , Asad Ali Siyal , Eric Sheng-Wen Chen , Bayarmaa Enkhbayar , Takashi Angata , Kuo-I Lin , Yu-Ju Chen , Hsiung-Lin Tu

Mass spectrometry-based targeted proteomics for analysis of protein mutations.

Mass spectrometry reviews

Avec: Tai-Tu Lin , Tong Zhang , Reta B Kitata , Tao Liu , Richard D Smith , Wei-Jun Qian , Tujin Shi

Long-read RNA-seq atlas of novel microglia isoforms elucidates disease-associated genetic regulation of splicing.

medRxiv : the preprint server for health sciences

Avec: Jack Humphrey , Erica Brophy , Roman Kosoy , Biao Zeng , Elena Coccia , Daniele Mattei , Ashvin Ravi , Anastasia G Efthymiou , Elisa Navarro , Benjamin Z Muller , Gijsje Jlj Snijders , Amanda Allan , Alexandra Münch , Steven P Kleopoulos , Stathis Argyriou , Zhiping Shao , Nancy Francoeur , Chia-Feng Tsai , Marina A Gritsenko , Matthew E Monroe , Vanessa L Paurus , Karl K Weitz , Tujin Shi , Robert Sebra , Tao Liu , Lot D de Witte , Alison M Goate , David A Bennett , Vahram Haroutunian , Gabriel E Hoffman , John F Fullard , Panos Roussos , Towfique Raj

A data-independent acquisition-based global phosphoproteomics system enables deep profiling.

Nature communications

Avec: Wai-Kok Choong , Chia-Feng Tsai , Pei-Yi Lin , Bo-Shiun Chen , Yun-Chien Chang , Alexey I Nesvizhskii , Ting-Yi Sung , Yu-Ju Chen

Integrating site-specific peptide reporters and targeted mass spectrometry enables rapid substrate-specific kinase assay at the nanogram cell level.

Analytica chimica acta

Avec: Aaron James F Reyes , Mira Anne C Dela Rosa , Yi-Ting Wang , Pei-Yi Lin , Pan-Chyr Yang , Assaf Friedler , Shlomo Yitzchaik , Yu-Ju Chen

Targeted Mass Spectrometry Assays for Specific Quantification of Urinary proPSA Isoforms.

Journal of proteome research

Avec: Lisa Y Hu , Tai-Tu Lin , Carrie D Nicora , Thomas L Fillmore , Song Nie , Robert D Hudson , Tao Liu , Robin J Leach , Alvin Y Liu , Wei-Jun Qian , Tujin Shi

Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies.

Nature communications

Avec: Yue Xuan , Nicholas W Bateman , Sebastien Gallien , Sandra Goetze , Yue Zhou , Pedro Navarro , Mo Hu , Niyati Parikh , Brian L Hood , Kelly A Conrads , Christina Loosse , Sander R Piersma , Davide Chiasserini , Hongwen Zhu , Guixue Hou , Muhammad Tahir , Andrew Macklin , Amanda Khoo , Xiuxuan Sun , Ben Crossett , Albert Sickmann , Yu-Ju Chen , Connie R Jimenez , Hu Zhou , Siqi Liu , Martin R Larsen , Thomas Kislinger , Zhinan Chen , Benjamin L Parker , Stuart J Cordwell , Bernd Wollscheid , Thomas P Conrads

Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis.

Biotechnology for biofuels and bioproducts

Avec: Zhangyang Xu , Bo Peng , Carrie D Nicora , Karl K Weitz , Yunqiao Pu , Tujin Shi , John R Cort , Arthur J Ragauskas , Bin Yang

A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics.

Communications biology

Avec: Chia-Feng Tsai , Yi-Ting Wang , Chuan-Chih Hsu , Rosalie K Chu , Marija Velickovic , Rui Zhao , Sarah M Williams , William B Chrisler , Marda L Jorgensen , Ronald J Moore , Ying Zhu , Karin D Rodland , Richard D Smith , Clive H Wasserfall , Tujin Shi , Tao Liu

Multiplexed quantitative proteomics in prostate cancer biomarker development.

Advances in cancer research

Avec: Yuqian Gao , Hyeyoon Kim , Tai-Tu Lin , Adam C Swensen , Tujin Shi , Tao Liu

Réseau de co-auteurs

Tujin Shi 10 collaborations

Tao Liu 7 collaborations

Chia-Feng Tsai 5 collaborations

Yu-Ju Chen 5 collaborations

Zhangyang Xu 3 collaborations

Richard D Smith 3 collaborations

Yi-Ting Wang 3 collaborations

Tai-Tu Lin 3 collaborations

Marija Velickovic 2 collaborations

Rui Zhao 2 collaborations

David Scholten 2 collaborations

Rosalie K Chu 2 collaborations

William B Chrisler 2 collaborations

Huiping Liu 2 collaborations

Clive H Wasserfall 2 collaborations

Asad Ali Siyal 2 collaborations

Eric Sheng-Wen Chen 2 collaborations

Hsiung-Lin Tu 2 collaborations

Tong Zhang 2 collaborations

Reta B Kitata 2 collaborations

Wei-Jun Qian 2 collaborations

Karl K Weitz 2 collaborations

Pei-Yi Lin 2 collaborations

Carrie D Nicora 2 collaborations

Daniel J Orton 1 collaboration

Jeremy V Mathews 1 collaboration

Paul D Piehowski 1 collaboration

Rongge Zou 1 collaboration

Nina C Horn 1 collaboration

Hsin-Ju Chan 1 collaboration

Jhih-Ci Yang 1 collaboration

Emma Schuster 1 collaboration

Nurmaa Dashzeveg 1 collaboration

Yuzhi Jia 1 collaboration

Kibria Golam 1 collaboration

Andrew Hoffman 1 collaboration

Youbin Zhang 1 collaboration

Chunlei Zheng 1 collaboration

Erika Ramos 1 collaboration

Rokana Taftaf 1 collaboration

Lamiaa El- Shennawy 1 collaboration

Valery Adorno-Cruz 1 collaboration

Carolina Reduzzi 1 collaboration

Sabina Spahija 1 collaboration

Rong Xu 1 collaboration

Kalliopi P Siziopikou 1 collaboration

Leonidas C Platanias 1 collaboration

Ami Shah 1 collaboration

William J Gradishar 1 collaboration

Massimo Cristofanilli 1 collaboration

Komal Abhange 1 collaboration

Jie Zhang 1 collaboration

Matthew J Gaffrey 1 collaboration

Valerie Gunchick 1 collaboration

Valerie Khaykin 1 collaboration

Vaibhav Sahai 1 collaboration

Kyle C Cuneo 1 collaboration

Neehar D Parikh 1 collaboration

David M Lubman 1 collaboration

Sofani Tafesse Gebreyesus 1 collaboration

Bayarmaa Enkhbayar 1 collaboration

Takashi Angata 1 collaboration

Kuo-I Lin 1 collaboration

Jack Humphrey 1 collaboration

Erica Brophy 1 collaboration

Roman Kosoy 1 collaboration

Biao Zeng 1 collaboration

Elena Coccia 1 collaboration

Daniele Mattei 1 collaboration

Ashvin Ravi 1 collaboration

Anastasia G Efthymiou 1 collaboration

Elisa Navarro 1 collaboration

Benjamin Z Muller 1 collaboration

Gijsje Jlj Snijders 1 collaboration

Amanda Allan 1 collaboration

Alexandra Münch 1 collaboration

Steven P Kleopoulos 1 collaboration

Stathis Argyriou 1 collaboration

Zhiping Shao 1 collaboration

Nancy Francoeur 1 collaboration

Marina A Gritsenko 1 collaboration

Matthew E Monroe 1 collaboration

Vanessa L Paurus 1 collaboration

Robert Sebra 1 collaboration

Lot D de Witte 1 collaboration

Alison M Goate 1 collaboration

David A Bennett 1 collaboration

Vahram Haroutunian 1 collaboration

Gabriel E Hoffman 1 collaboration

John F Fullard 1 collaboration

Panos Roussos 1 collaboration

Towfique Raj 1 collaboration

Wai-Kok Choong 1 collaboration

Bo-Shiun Chen 1 collaboration

Yun-Chien Chang 1 collaboration

Alexey I Nesvizhskii 1 collaboration

Ting-Yi Sung 1 collaboration

Aaron James F Reyes 1 collaboration

Mira Anne C Dela Rosa 1 collaboration

Pan-Chyr Yang 1 collaboration

Assaf Friedler 1 collaboration

Shlomo Yitzchaik 1 collaboration

Lisa Y Hu 1 collaboration

Thomas L Fillmore 1 collaboration

Song Nie 1 collaboration

Robert D Hudson 1 collaboration

Robin J Leach 1 collaboration

Alvin Y Liu 1 collaboration

Yue Xuan 1 collaboration

Nicholas W Bateman 1 collaboration

Sebastien Gallien 1 collaboration

Sandra Goetze 1 collaboration

Yue Zhou 1 collaboration

Pedro Navarro 1 collaboration

Mo Hu 1 collaboration

Niyati Parikh 1 collaboration

Brian L Hood 1 collaboration

Kelly A Conrads 1 collaboration

Christina Loosse 1 collaboration

Sander R Piersma 1 collaboration

Davide Chiasserini 1 collaboration

Hongwen Zhu 1 collaboration

Guixue Hou 1 collaboration

Muhammad Tahir 1 collaboration

Andrew Macklin 1 collaboration

Amanda Khoo 1 collaboration

Xiuxuan Sun 1 collaboration

Ben Crossett 1 collaboration

Albert Sickmann 1 collaboration

Connie R Jimenez 1 collaboration

Hu Zhou 1 collaboration

Siqi Liu 1 collaboration

Martin R Larsen 1 collaboration

Thomas Kislinger 1 collaboration

Zhinan Chen 1 collaboration

Benjamin L Parker 1 collaboration

Stuart J Cordwell 1 collaboration

Bernd Wollscheid 1 collaboration

Thomas P Conrads 1 collaboration

Bo Peng 1 collaboration

Yunqiao Pu 1 collaboration

John R Cort 1 collaboration

Arthur J Ragauskas 1 collaboration

Bin Yang 1 collaboration

Chuan-Chih Hsu 1 collaboration

Sarah M Williams 1 collaboration

Marda L Jorgensen 1 collaboration

Ronald J Moore 1 collaboration

Ying Zhu 1 collaboration

Karin D Rodland 1 collaboration

Yuqian Gao 1 collaboration

Hyeyoon Kim 1 collaboration

Adam C Swensen 1 collaboration