Raffaello Potestio

Affiliations

Physics Department , University of Trento , Via Sommarive 14 , I-38123 Trento , Italy.
INFN-TIFPA, Trento Institute for Fundamental Physics and Applications , Via Sommarive 14 , I-38123 Trento , Italy.

Publications (24)

Tackling the Limitations of Copolymeric Small Interfering RNA Delivery Agents by a Combined Experimental-Computational Approach.

Biomacromolecules

Avec: Ilja Tabujew , Maziar Heidari , Christoph Freidel , Mark Helm , Lars Tebbe , Uwe Wolfrum , Kerstin Nagel-Wolfrum , Kaloian Koynov , Philip Biehl , Felix H Schacher , Kalina Peneva

Envisioning data sharing for the biocomputing community.

Interface focus

Avec: Enrico Riccardi , Sergio Pantano ,

A Deep Graph Network-Enhanced Sampling Approach to Efficiently Explore the Space of Reduced Representations of Proteins.

Frontiers in molecular biosciences

Avec: Federico Errica , Marco Giulini , Davide Bacciu , Roberto Menichetti , Alessio Micheli ,

Gamma-Hemolysin Components: Computational Strategies for LukF-Hlg2 Dimer Reconstruction on a Model Membrane.

International journal of molecular sciences

Avec: Costanza Paternoster , Thomas Tarenzi , Gianluca Lattanzi

Ligand-protein interactions in lysozyme investigated through a dual-resolution model.

Proteins

Avec: Raffaele Fiorentini , Kurt Kremer ,

Open-boundary Hamiltonian adaptive resolution. From grand canonical to non-equilibrium molecular dynamics simulations.

The Journal of chemical physics

Avec: Maziar Heidari , Kurt Kremer , Ramin Golestanian , Robinson Cortes-Huerto

Density-functional-theory approach to the Hamiltonian adaptive resolution simulation method.

Journal of physics. Condensed matter : an Institute of Physics journal

Avec: L A Baptista , R C Dutta , M Sevilla , M Heidari , R Potestio , K Kremer , R Cortes-Huerto

Making sense of complex systems through resolution, relevance, and mapping entropy.

Physical review. E

Avec: Roi Holtzman , Marco Giulini ,

Quality assessment and community detection methods for anonymized mobility data in the Italian Covid context.

Scientific reports

Avec: Jules Morand , Shoichi Yip , Yannis Velegrakis , Gianluca Lattanzi , Luca Tubiana

Searching the Optimal Folding Routes of a Complex Lasso Protein.

Biophysical journal

Avec: Claudio Perego ,

Optimal Coarse-Grained Site Selection in Elastic Network Models of Biomolecules.

Journal of chemical theory and computation

Avec: Patrick Diggins , Changjiang Liu , Markus Deserno ,

Protein self-entanglement modulates successful folding to the native state: A multi-scale modeling study.

The Journal of chemical physics

Avec: Lorenzo Federico Signorini , Claudio Perego ,

Kinetics of radiation-induced DNA double-strand breaks through coarse-grained simulations.

Biophysical journal

Avec: Manuel Micheloni , Lorenzo Petrolli , Gianluca Lattanzi ,

A deep learning approach to the structural analysis of proteins.

Interface focus

Avec: Marco Giulini ,

Open-Boundary Molecular Mechanics/Coarse-Grained Framework for Simulations of Low-Resolution G-Protein-Coupled Receptor-Ligand Complexes.

Journal of chemical theory and computation

Avec: Thomas Tarenzi , Vania Calandrini , Paolo Carloni

A journey through mapping space: characterising the statistical and metric properties of reduced representations of macromolecules.

The European physical journal. B

Avec: Roberto Menichetti , Marco Giulini ,

Membrane binding of pore-forming γ-hemolysin components studied at different lipid compositions.

Biochimica et biophysica acta. Biomembranes

Avec: Thomas Tarenzi , Gianluca Lattanzi ,

Structural Basis of Mutation-Dependent p53 Tetramerization Deficiency.

International journal of molecular sciences

Avec: Marta Rigoli , Giovanni Spagnolli , Giulia Lorengo , Paola Monti , Emiliano Biasini , Alberto Inga

Information-theoretical measures identify accurate low-resolution representations of protein configurational space.

Soft matter

Avec: Margherita Mele , Roberto Covino ,

Fast, Accurate, and System-Specific Variable-Resolution Modeling of Proteins.

Journal of chemical information and modeling

Avec: Raffaele Fiorentini , Thomas Tarenzi ,

Computational methods in the study of self-entangled proteins: a critical appraisal.

Journal of physics. Condensed matter : an Institute of Physics journal

Avec: Claudio Perego ,

Steering a solute between coexisting solvation states: Revisiting nonequilibrium work relations and the calculation of free energy differences.

The Journal of chemical physics

Avec: Maziar Heidari , Robinson Cortes-Huerto , Kurt Kremer

Communication pathways bridge local and global conformations in an IgG4 antibody.

Scientific reports

Avec: Thomas Tarenzi , Marta Rigoli ,

Comparing equilibration schemes of high-molecular-weight polymer melts with topological indicators.

Journal of physics. Condensed matter : an Institute of Physics journal

Avec: Luca Tubiana , Hideki Kobayashi , Burkhard Dünweg , Kurt Kremer , Peter Virnau , Kostas Daoulas

Réseau de co-auteurs

Thomas Tarenzi 5 collaborations

Marco Giulini 4 collaborations

Gianluca Lattanzi 4 collaborations

Kurt Kremer 4 collaborations

Maziar Heidari 3 collaborations

Claudio Perego 3 collaborations

Roberto Menichetti 2 collaborations

Raffaele Fiorentini 2 collaborations

Robinson Cortes-Huerto 2 collaborations

Luca Tubiana 2 collaborations

Marta Rigoli 2 collaborations

Ilja Tabujew 1 collaboration

Christoph Freidel 1 collaboration

Mark Helm 1 collaboration

Lars Tebbe 1 collaboration

Uwe Wolfrum 1 collaboration

Kerstin Nagel-Wolfrum 1 collaboration

Kaloian Koynov 1 collaboration

Philip Biehl 1 collaboration

Felix H Schacher 1 collaboration

Kalina Peneva 1 collaboration

Enrico Riccardi 1 collaboration

Sergio Pantano 1 collaboration

Federico Errica 1 collaboration

Davide Bacciu 1 collaboration

Alessio Micheli 1 collaboration

Costanza Paternoster 1 collaboration

Ramin Golestanian 1 collaboration

L A Baptista 1 collaboration

R C Dutta 1 collaboration

M Sevilla 1 collaboration

M Heidari 1 collaboration

R Potestio 1 collaboration

K Kremer 1 collaboration

R Cortes-Huerto 1 collaboration

Roi Holtzman 1 collaboration

Jules Morand 1 collaboration

Shoichi Yip 1 collaboration

Yannis Velegrakis 1 collaboration

Patrick Diggins 1 collaboration

Changjiang Liu 1 collaboration

Markus Deserno 1 collaboration

Lorenzo Federico Signorini 1 collaboration

Manuel Micheloni 1 collaboration

Lorenzo Petrolli 1 collaboration

Vania Calandrini 1 collaboration

Paolo Carloni 1 collaboration

Giovanni Spagnolli 1 collaboration

Giulia Lorengo 1 collaboration

Paola Monti 1 collaboration

Emiliano Biasini 1 collaboration

Alberto Inga 1 collaboration

Margherita Mele 1 collaboration

Roberto Covino 1 collaboration

Hideki Kobayashi 1 collaboration

Burkhard Dünweg 1 collaboration

Peter Virnau 1 collaboration

Kostas Daoulas 1 collaboration