Nicola Calonaci

Affiliations

Department of Mathematics and Geosciences, Università degli Studi di Trieste, Trieste, Italy.

Publications (7)

A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.

PLoS computational biology

Avec: Lucrezia Patruno , Salvatore Milite , Riccardo Bergamin , Alberto D'Onofrio , Fabio Anselmi , Marco Antoniotti , Alex Graudenzi , Giulio Caravagna

Toward empirical force fields that match experimental observables.

The Journal of chemical physics

Avec: Thorben Fröhlking , Mattia Bernetti , Giovanni Bussi

Computational validation of clonal and subclonal copy number alterations from bulk tumor sequencing using CNAqc.

Genome biology

Avec: Alice Antonello , Riccardo Bergamin , Jacob Househam , Salvatore Milite , Marc J Williams , Fabio Anselmi , Alberto d'Onofrio , Vasavi Sundaram , Alona Sosinsky , William C H Cross , Giulio Caravagna

Machine learning a model for RNA structure prediction.

NAR genomics and bioinformatics

Avec: Alisha Jones , Francesca Cuturello , Michael Sattler , Giovanni Bussi

A Bayesian method to cluster single-cell RNA sequencing data using copy number alterations.

Bioinformatics (Oxford, England)

Avec: Salvatore Milite , Riccardo Bergamin , Lucrezia Patruno , Giulio Caravagna

Clonal KEAP1 mutations with loss of heterozygosity share reduced immunotherapy efficacy and low immune cell infiltration in lung adenocarcinoma.

Annals of oncology : official journal of the European Society for Medical Oncology

Avec: S Scalera , B Ricciuti , M Mazzotta , N Calonaci , J V Alessi , L Cipriani , G Bon , B Messina , G Lamberti , A Di Federico , F Pecci , S Milite , E Krasniqi , M Barba , P Vici , A Vecchione , F De Nicola , L Ciuffreda , F Goeman , M Fanciulli , S Buglioni , E Pescarmona , B Sharma , K D Felt , J Lindsay , S J Rodig , R De Maria , G Caravagna , F Cappuzzo , G Ciliberto , M M Awad , M Maugeri-Saccà

Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments.

Journal of chemical theory and computation

Avec: Mattia Bernetti , Alisha Jones , Michael Sattler , Giovanni Bussi

Réseau de co-auteurs

Salvatore Milite 3 collaborations

Riccardo Bergamin 3 collaborations

Giulio Caravagna 3 collaborations

Giovanni Bussi 3 collaborations

Lucrezia Patruno 2 collaborations

Fabio Anselmi 2 collaborations

Mattia Bernetti 2 collaborations

Alisha Jones 2 collaborations

Michael Sattler 2 collaborations

Alberto D'Onofrio 1 collaboration

Marco Antoniotti 1 collaboration

Alex Graudenzi 1 collaboration

Thorben Fröhlking 1 collaboration

Alice Antonello 1 collaboration

Jacob Househam 1 collaboration

Marc J Williams 1 collaboration

Alberto d'Onofrio 1 collaboration

Vasavi Sundaram 1 collaboration

Alona Sosinsky 1 collaboration

William C H Cross 1 collaboration

Francesca Cuturello 1 collaboration

S Scalera 1 collaboration

B Ricciuti 1 collaboration

M Mazzotta 1 collaboration

N Calonaci 1 collaboration

J V Alessi 1 collaboration

L Cipriani 1 collaboration

G Bon 1 collaboration

B Messina 1 collaboration

G Lamberti 1 collaboration

A Di Federico 1 collaboration

F Pecci 1 collaboration

S Milite 1 collaboration

E Krasniqi 1 collaboration

M Barba 1 collaboration

P Vici 1 collaboration

A Vecchione 1 collaboration

F De Nicola 1 collaboration

L Ciuffreda 1 collaboration

F Goeman 1 collaboration

M Fanciulli 1 collaboration

S Buglioni 1 collaboration

E Pescarmona 1 collaboration

B Sharma 1 collaboration

K D Felt 1 collaboration

J Lindsay 1 collaboration

S J Rodig 1 collaboration

R De Maria 1 collaboration

G Caravagna 1 collaboration

F Cappuzzo 1 collaboration

G Ciliberto 1 collaboration

M M Awad 1 collaboration

M Maugeri-Saccà 1 collaboration