Michael J Sweredoski

Affiliations

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.

Publications (20)

Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Mohammed Kaplan , João P G L M Rodrigues , Elitza I Tocheva , Yi-Wei Chang , Davi R Ortega , Morgan Beeby , Grant J Jensen

Stable Isotope Analysis of Intact Oxyanions Using Electrospray Quadrupole-Orbitrap Mass Spectrometry.

Analytical chemistry

Avec: Cajetan Neubauer , Antoine Crémière , Xingchen T Wang , Nivedita Thiagarajan , Alex L Sessions , Jess F Adkins , Nathan F Dalleska , Alexandra V Turchyn , Josephine A Clegg , Annie Moradian , Spiros D Garbis , John M Eiler

PIKES Analysis Reveals Response to Degraders and Key Regulatory Mechanisms of the CRL4 Network.

Molecular cell

Avec: Kurt M Reichermeier , Ronny Straube , Justin M Reitsma , Christopher M Rose , Annie Moradian , Willem den Besten , Trent Hinkle , Erik Verschueren , Georg Petzold , Nicolas H Thomä , Ingrid E Wertz , Raymond J Deshaies , Donald S Kirkpatrick

Quantitative measurement of the requirement of diverse protein degradation pathways in MHC class I peptide presentation.

Science advances

Avec: Jennifer L Mamrosh , David J Sherman , Joseph R Cohen , James A Johnston , Marisa K Joubert , Jing Li , J Russell Lipford , Brett Lomenick , Annie Moradian , Siddharth Prabhu , Bryan Vander Lugt , Rati Verma , Raymond J Deshaies

Mitochondrial fusion is required for spermatogonial differentiation and meiosis.

eLife

Avec: Grigor Varuzhanyan , Rebecca Rojansky , Robert L J Graham , Sonja Hess , Mark S Ladinsky , David C Chan

BUD13 Promotes a Type I Interferon Response by Countering Intron Retention in Irf7.

Molecular cell

Avec: Luke Frankiw , Devdoot Majumdar , Christian Burns , Logan Vlach , Annie Moradian , David Baltimore

Data-Independent Acquisition for the Orbitrap Q Exactive HF: A Tutorial.

Journal of proteome research

Avec: Léon Reubsaet , Annie Moradian

In-depth proteomic analysis of proteasome inhibitors bortezomib, carfilzomib and MG132 reveals that mortality factor 4-like 1 (MORF4L1) protein ubiquitylation is negatively impacted.

Journal of proteomics

Avec: Tanya R Porras-Yakushi , Justin M Reitsma , Raymond J Deshaies , Sonja Hess

Nano volume fractionation strategy for dilute-and-shoot injections in off-line loss-less proteomic workflows for extensive protein identifications of ultra-low sample amounts.

Journal of chromatography. A

Avec: Léon Reubsaet , Annie Moradian , Brett Lomenick , Roxana Eggleston-Rangel , Spiros D Garbis

Robust cullin-RING ligase function is established by a multiplicity of poly-ubiquitylation pathways.

eLife

Avec: Spencer Hill , Kurt Reichermeier , Daniel C Scott , Lorena Samentar , Jasmin Coulombe-Huntington , Luisa Izzi , Xiaojing Tang , Rebeca Ibarra , Thierry Bertomeu , Annie Moradian , Nora Caberoy , Brenda A Schulman , Frank Sicheri , Mike Tyers , Gary Kleiger

WNK1 is an assembly factor for the human ER membrane protein complex.

Molecular cell

Avec: Tino Pleiner , Masami Hazu , Giovani Pinton Tomaleri , Kurt Januszyk , Robert S Oania , Annie Moradian , Alina Guna , Rebecca M Voorhees

Deciphering the regulatory genome of

eLife

Avec: William T Ireland , Suzannah M Beeler , Emanuel Flores-Bautista , Nicholas S McCarty , Tom Röschinger , Nathan M Belliveau , Annie Moradian , Justin B Kinney , Rob Phillips

Functional glycoproteomics by integrated network assembly and partitioning.

bioRxiv : the preprint server for biology

Avec: Matthew E Griffin , John W Thompson , Yao Xiao , Rita B Aksenfeld , Elizabeth H Jensen , Yelena Koldobskaya , Andrew L Schacht , Terry D Kim , Priya Choudhry , Brett Lomenick , Spiros D Garbis , Annie Moradian , Linda C Hsieh-Wilson

Tyramide signal amplification mass spectrometry (TSA-MS) ratio identifies nuclear speckle proteins.

The Journal of cell biology

Avec: Joseph Dopie , Annie Moradian , Andrew S Belmont

The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa.

Molecular microbiology

Avec: Megan Bergkessel , Brett M Babin , David VanderVelde , Annie Moradian , Roxana Eggleston-Rangel , Sonja Hess , David A Tirrell , Irina Artsimovitch , Dianne K Newman

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.

Cell

Avec: Gil Sharon , Nikki Jamie Cruz , Dae-Wook Kang , Michael J Gandal , Bo Wang , Young-Mo Kim , Erika M Zink , Cameron P Casey , Bryn C Taylor , Christianne J Lane , Lisa M Bramer , Nancy G Isern , David W Hoyt , Cecilia Noecker , Annie Moradian , Elhanan Borenstein , Janet K Jansson , Rob Knight , Thomas O Metz , Carlos Lois , Daniel H Geschwind , Rosa Krajmalnik-Brown , Sarkis K Mazmanian

LONP1 and mtHSP70 cooperate to promote mitochondrial protein folding.

Nature communications

Avec: Chun-Shik Shin , Shuxia Meng , Spiros D Garbis , Annie Moradian , Robert W Taylor , Brett Lomenick , David C Chan

Identification of new OPA1 cleavage site reveals that short isoforms regulate mitochondrial fusion.

Molecular biology of the cell

Avec: Ruohan Wang , Prashant Mishra , Spiros D Garbis , Annie Moradian , David C Chan

Amino Acid Analog Induces Stress Response in Marine

Applied and environmental microbiology

Avec: Dana E Michels , Brett Lomenick , Tsui-Fen Chou , Alexis Pasulka

Peripheral neuronal activation shapes the microbiome and alters gut physiology.

Cell reports

Avec: Jessica A Griffiths , Bryan B Yoo , Peter Thuy-Boun , Victor J Cantu , Kelly C Weldon , Collin Challis , Ken Y Chan , Taren M Thron , Gil Sharon , Annie Moradian , Gregory Humphrey , Qiyun Zhu , Justin P Shaffer , Dennis W Wolan , Pieter C Dorrestein , Rob Knight , Viviana Gradinaru , Sarkis K Mazmanian

Réseau de co-auteurs

Annie Moradian 16 collaborations

Spiros D Garbis 5 collaborations

Brett Lomenick 5 collaborations

Raymond J Deshaies 3 collaborations

Sonja Hess 3 collaborations

David C Chan 3 collaborations

Justin M Reitsma 2 collaborations

Léon Reubsaet 2 collaborations

Roxana Eggleston-Rangel 2 collaborations

Gil Sharon 2 collaborations

Rob Knight 2 collaborations

Sarkis K Mazmanian 2 collaborations

Mohammed Kaplan 1 collaboration

João P G L M Rodrigues 1 collaboration

Elitza I Tocheva 1 collaboration

Yi-Wei Chang 1 collaboration

Davi R Ortega 1 collaboration

Morgan Beeby 1 collaboration

Grant J Jensen 1 collaboration

Cajetan Neubauer 1 collaboration

Antoine Crémière 1 collaboration

Xingchen T Wang 1 collaboration

Nivedita Thiagarajan 1 collaboration

Alex L Sessions 1 collaboration

Jess F Adkins 1 collaboration

Nathan F Dalleska 1 collaboration

Alexandra V Turchyn 1 collaboration

Josephine A Clegg 1 collaboration

John M Eiler 1 collaboration

Kurt M Reichermeier 1 collaboration

Ronny Straube 1 collaboration

Christopher M Rose 1 collaboration

Willem den Besten 1 collaboration

Trent Hinkle 1 collaboration

Erik Verschueren 1 collaboration

Georg Petzold 1 collaboration

Nicolas H Thomä 1 collaboration

Ingrid E Wertz 1 collaboration

Donald S Kirkpatrick 1 collaboration

Jennifer L Mamrosh 1 collaboration

David J Sherman 1 collaboration

Joseph R Cohen 1 collaboration

James A Johnston 1 collaboration

Marisa K Joubert 1 collaboration

Jing Li 1 collaboration

J Russell Lipford 1 collaboration

Siddharth Prabhu 1 collaboration

Bryan Vander Lugt 1 collaboration

Rati Verma 1 collaboration

Grigor Varuzhanyan 1 collaboration

Rebecca Rojansky 1 collaboration

Robert L J Graham 1 collaboration

Mark S Ladinsky 1 collaboration

Luke Frankiw 1 collaboration

Devdoot Majumdar 1 collaboration

Christian Burns 1 collaboration

Logan Vlach 1 collaboration

David Baltimore 1 collaboration

Tanya R Porras-Yakushi 1 collaboration

Spencer Hill 1 collaboration

Kurt Reichermeier 1 collaboration

Daniel C Scott 1 collaboration

Lorena Samentar 1 collaboration

Jasmin Coulombe-Huntington 1 collaboration

Luisa Izzi 1 collaboration

Xiaojing Tang 1 collaboration

Rebeca Ibarra 1 collaboration

Thierry Bertomeu 1 collaboration

Nora Caberoy 1 collaboration

Brenda A Schulman 1 collaboration

Frank Sicheri 1 collaboration

Mike Tyers 1 collaboration

Gary Kleiger 1 collaboration

Tino Pleiner 1 collaboration

Masami Hazu 1 collaboration

Giovani Pinton Tomaleri 1 collaboration

Kurt Januszyk 1 collaboration

Robert S Oania 1 collaboration

Alina Guna 1 collaboration

Rebecca M Voorhees 1 collaboration

William T Ireland 1 collaboration

Suzannah M Beeler 1 collaboration

Emanuel Flores-Bautista 1 collaboration

Nicholas S McCarty 1 collaboration

Tom Röschinger 1 collaboration

Nathan M Belliveau 1 collaboration

Justin B Kinney 1 collaboration

Rob Phillips 1 collaboration

Matthew E Griffin 1 collaboration

John W Thompson 1 collaboration

Yao Xiao 1 collaboration

Rita B Aksenfeld 1 collaboration

Elizabeth H Jensen 1 collaboration

Yelena Koldobskaya 1 collaboration

Andrew L Schacht 1 collaboration

Terry D Kim 1 collaboration

Priya Choudhry 1 collaboration

Linda C Hsieh-Wilson 1 collaboration

Joseph Dopie 1 collaboration

Andrew S Belmont 1 collaboration

Megan Bergkessel 1 collaboration

Brett M Babin 1 collaboration

David VanderVelde 1 collaboration

David A Tirrell 1 collaboration

Irina Artsimovitch 1 collaboration

Dianne K Newman 1 collaboration

Nikki Jamie Cruz 1 collaboration

Dae-Wook Kang 1 collaboration

Michael J Gandal 1 collaboration

Bo Wang 1 collaboration

Young-Mo Kim 1 collaboration

Erika M Zink 1 collaboration

Cameron P Casey 1 collaboration

Bryn C Taylor 1 collaboration

Christianne J Lane 1 collaboration

Lisa M Bramer 1 collaboration

Nancy G Isern 1 collaboration

David W Hoyt 1 collaboration

Cecilia Noecker 1 collaboration

Elhanan Borenstein 1 collaboration

Janet K Jansson 1 collaboration

Thomas O Metz 1 collaboration

Carlos Lois 1 collaboration

Daniel H Geschwind 1 collaboration

Rosa Krajmalnik-Brown 1 collaboration

Chun-Shik Shin 1 collaboration

Shuxia Meng 1 collaboration

Robert W Taylor 1 collaboration

Ruohan Wang 1 collaboration

Prashant Mishra 1 collaboration

Dana E Michels 1 collaboration

Tsui-Fen Chou 1 collaboration

Alexis Pasulka 1 collaboration

Jessica A Griffiths 1 collaboration

Bryan B Yoo 1 collaboration

Peter Thuy-Boun 1 collaboration

Victor J Cantu 1 collaboration

Kelly C Weldon 1 collaboration

Collin Challis 1 collaboration

Ken Y Chan 1 collaboration

Taren M Thron 1 collaboration

Gregory Humphrey 1 collaboration

Qiyun Zhu 1 collaboration

Justin P Shaffer 1 collaboration

Dennis W Wolan 1 collaboration

Pieter C Dorrestein 1 collaboration

Viviana Gradinaru 1 collaboration