Mhaned Oubounyt

Affiliations

Chair of Experimental Bioinformatics, TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany.
Chair of Computational Systems Biology, University of Hamburg, Hamburg, Germany.

Publications (13)

Enabling single-cell trajectory network enrichment.

Nature computational science

Avec: Alexander G B Grønning , Kristiyan Kanev , Jesper Lund , Tim Kacprowski , Dietmar Zehn , Richard Röttger , Jan Baumbach

Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.

ArXiv

Avec: Andreas Maier , Michael Hartung , Mark Abovsky , Klaudia Adamowicz , Gary D Bader , Sylvie Baier , David B Blumenthal , Jing Chen , Maria L Elkjaer , Carlos Garcia-Hernandez , Mohamed Helmy , Markus Hoffmann , Igor Jurisica , Max Kotlyar , Olga Lazareva , Hagai Levi , Markus List , Sebastian Lobentanzer , Joseph Loscalzo , Noel Malod-Dognin , Quirin Manz , Julian Matschinske , Miles Mee , Alexander R Pico , Rudolf T Pillich , Julian M Poschenrieder , Dexter Pratt , Nataša Pržulj , Sepideh Sadegh , Julio Saez-Rodriguez , Suryadipto Sarkar , Gideon Shaked , Ron Shamir , Nico Trummer , Ugur Turhan , Ruisheng Wang , Olga Zolotareva , Jan Baumbach

DeePromoter: Robust Promoter Predictor Using Deep Learning.

Frontiers in genetics

Avec: Zakaria Louadi , Hilal Tayara , Kil To Chong

Ablation of Vitamin D Signaling in Cardiomyocytes Leads to Functional Impairment and Stimulation of Pro-Inflammatory and Pro-Fibrotic Gene Regulatory Networks in a Left Ventricular Hypertrophy Model in Mice.

International journal of molecular sciences

Avec: Ana Zupcic , Nejla Latic , Alice Ramesova , Geert Carmeliet , Jan Baumbach , Maria L Elkjaer , Reinhold G Erben

NAR genomics and bioinformatics

Avec: Maria L Elkjaer , Tanja Laske , Alexander G B Grønning , Marcus J Moeller , Jan Baumbach

Deep Splicing Code: Classifying Alternative Splicing Events Using Deep Learning.

Genes

Avec: Zakaria Louadi , Hilal Tayara , Kil To Chong

Inference of differential key regulatory networks and mechanistic drug repurposing candidates from scRNA-seq data with SCANet.

Bioinformatics (Oxford, England)

Avec: Lorenz Adlung , Fabio Patroni , Nina Kerstin Wenke , Andreas Maier , Michael Hartung , Jan Baumbach , Maria L Elkjaer

Laminarin-triggered defence responses are geographically dependent in natural populations of Solanum chilense.

Journal of experimental botany

Avec: Parvinderdeep S Kahlon , Andrea Förner , Michael Muser , Michael Gigl , Richard Hammerl , Jan Baumbach , Ralph Hückelhoven , Corinna Dawid , Remco Stam

Network analyses predict major regulators of resistance to early blight disease complex in tomato.

BMC plant biology

Avec: Christopher S Tominello-Ramirez , Lina Muñoz Hoyos , Remco Stam

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.

Nature communications

Avec: Sepideh Sadegh , Julian Matschinske , David B Blumenthal , Gihanna Galindez , Tim Kacprowski , Markus List , Reza Nasirigerdeh , Andreas Pichlmair , Tim Daniel Rose , Marisol Salgado-Albarrán , Julian Späth , Alexey Stukalov , Nina K Wenke , Kevin Yuan , Josch K Pauling , Jan Baumbach

Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing.

Nucleic acids research

Avec: Andreas Maier , Michael Hartung , Mark Abovsky , Klaudia Adamowicz , Gary D Bader , Sylvie Baier , David B Blumenthal , Jing Chen , Maria L Elkjaer , Carlos Garcia-Hernandez , Mohamed Helmy , Markus Hoffmann , Igor Jurisica , Max Kotlyar , Olga Lazareva , Hagai Levi , Markus List , Sebastian Lobentanzer , Joseph Loscalzo , Noel Malod-Dognin , Quirin Manz , Julian Matschinske , Miles Mee , Chiara Pastrello , Alexander R Pico , Rudolf T Pillich , Julian M Poschenrieder , Dexter Pratt , Nataša Pržulj , Sepideh Sadegh , Julio Saez-Rodriguez , Suryadipto Sarkar , Gideon Shaked , Ron Shamir , Nico Trummer , Ugur Turhan , Rui-Sheng Wang , Olga Zolotareva , Jan Baumbach

Single-Cell Multi-Omics Map of Cell Type-Specific Mechanistic Drivers of Multiple Sclerosis Lesions.

Neurology(R) neuroimmunology & neuroinflammation

Avec: Maria L Elkjaer , Anne Hartebrodt , Anna Weber , Lars Vitved , Richard Reynolds , Mads Thomassen , Richard Rottger , Jan Baumbach , Zsolt Illes

Heat-stress-induced ROS in maize silks cause late pollen tube growth arrest and sterility.

iScience

Avec: Wen Gong , Jan Baumbach , Thomas Dresselhaus

Réseau de co-auteurs

Jan Baumbach 10 collaborations

Maria L Elkjaer 6 collaborations

Andreas Maier 3 collaborations

Michael Hartung 3 collaborations

David B Blumenthal 3 collaborations

Markus List 3 collaborations

Julian Matschinske 3 collaborations

Sepideh Sadegh 3 collaborations

Alexander G B Grønning 2 collaborations

Tim Kacprowski 2 collaborations

Mark Abovsky 2 collaborations

Klaudia Adamowicz 2 collaborations

Gary D Bader 2 collaborations

Sylvie Baier 2 collaborations

Jing Chen 2 collaborations

Carlos Garcia-Hernandez 2 collaborations

Mohamed Helmy 2 collaborations

Markus Hoffmann 2 collaborations

Igor Jurisica 2 collaborations

Max Kotlyar 2 collaborations

Olga Lazareva 2 collaborations

Hagai Levi 2 collaborations

Sebastian Lobentanzer 2 collaborations

Joseph Loscalzo 2 collaborations

Noel Malod-Dognin 2 collaborations

Quirin Manz 2 collaborations

Miles Mee 2 collaborations

Alexander R Pico 2 collaborations

Rudolf T Pillich 2 collaborations

Julian M Poschenrieder 2 collaborations

Dexter Pratt 2 collaborations

Nataša Pržulj 2 collaborations

Julio Saez-Rodriguez 2 collaborations

Suryadipto Sarkar 2 collaborations

Gideon Shaked 2 collaborations

Ron Shamir 2 collaborations

Nico Trummer 2 collaborations

Ugur Turhan 2 collaborations

Olga Zolotareva 2 collaborations

Zakaria Louadi 2 collaborations

Hilal Tayara 2 collaborations

Kil To Chong 2 collaborations

Remco Stam 2 collaborations

Kristiyan Kanev 1 collaboration

Jesper Lund 1 collaboration

Dietmar Zehn 1 collaboration

Richard Röttger 1 collaboration

Ruisheng Wang 1 collaboration

Ana Zupcic 1 collaboration

Nejla Latic 1 collaboration

Alice Ramesova 1 collaboration

Geert Carmeliet 1 collaboration

Reinhold G Erben 1 collaboration

Tanja Laske 1 collaboration

Marcus J Moeller 1 collaboration

Lorenz Adlung 1 collaboration

Fabio Patroni 1 collaboration

Nina Kerstin Wenke 1 collaboration

Parvinderdeep S Kahlon 1 collaboration

Andrea Förner 1 collaboration

Michael Muser 1 collaboration

Michael Gigl 1 collaboration

Richard Hammerl 1 collaboration

Ralph Hückelhoven 1 collaboration

Corinna Dawid 1 collaboration

Christopher S Tominello-Ramirez 1 collaboration

Lina Muñoz Hoyos 1 collaboration

Gihanna Galindez 1 collaboration

Reza Nasirigerdeh 1 collaboration

Andreas Pichlmair 1 collaboration

Tim Daniel Rose 1 collaboration

Marisol Salgado-Albarrán 1 collaboration

Julian Späth 1 collaboration

Alexey Stukalov 1 collaboration

Nina K Wenke 1 collaboration

Kevin Yuan 1 collaboration

Josch K Pauling 1 collaboration

Chiara Pastrello 1 collaboration

Rui-Sheng Wang 1 collaboration

Anne Hartebrodt 1 collaboration

Anna Weber 1 collaboration

Lars Vitved 1 collaboration

Richard Reynolds 1 collaboration

Mads Thomassen 1 collaboration

Richard Rottger 1 collaboration

Zsolt Illes 1 collaboration

Wen Gong 1 collaboration

Thomas Dresselhaus 1 collaboration