Kurt LaButti

Affiliations
  • US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
ORCID: http://orcid.org/0000-0002-5838-1972

Publications (43)

A comparative genomics study of 23 Aspergillus species from section Flavi.

Nature communications
Avec: Inge Kjærbølling , Tammi Vesth , Jens C Frisvad , Jane L Nybo , Sebastian Theobald , Sara Kildgaard , Thomas Isbrandt Petersen , Alan Kuo , Atsushi Sato , Ellen K Lyhne , Martin E Kogle , Ad Wiebenga , Roland S Kun , Ronnie J M Lubbers , Miia R Mäkelä , Kerrie Barry , Mansi Chovatia , Alicia Clum , Chris Daum , Sajeet Haridas , Guifen He , Anna Lipzen , Stephen Mondo , Jasmyn Pangilinan , Robert Riley , Asaf Salamov , Blake A Simmons , Jon K Magnuson , Bernard Henrissat , Uffe H Mortensen , Thomas O Larsen , Ronald P de Vries , Igor V Grigoriev , Masayuki Machida , Scott E Baker , Mikael R Andersen

Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.

Environmental microbiology
Avec: Andrei S Steindorff , Akiko Carver , Sara Calhoun , Kyra Stillman , Haowen Liu , Anna Lipzen , Guifen He , Mi Yan , Jasmyn Pangilinan , Vivian Ng , Thomas D Bruns , Igor V Grigoriev

Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.

Molecular phylogenetics and evolution
Avec: Noah Hensen , Lucas Bonometti , Ivar Westerberg , Ioana Onut Brännström , Sonia Guillou , Sandrine Cros-Aarteil , Sara Calhoun , Sajeet Haridas , Alan Kuo , Stephen Mondo , Jasmyn Pangilinan , Robert Riley , Bill Andreopoulos , Anna Lipzen , Cindy Chen , Mi Yan , Chris Daum , Vivian Ng , Alicia Clum , Andrei Steindorff , Robin A Ohm , Francis Martin , Philippe Silar , Donald O Natvig , Christophe Lalanne , Valérie Gautier , Sandra Lorena Ament-Velásquez , Åsa Kruys , Miriam I Hutchinson , Amy Jo Powell , Kerrie Barry , Andrew N Miller , Igor V Grigoriev , Robert Debuchy , Pierre Gladieux , Markus Hiltunen Thorén , Hanna Johannesson

High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune.

Fungal genetics and biology : FG & B
Avec: Ioana M Marian , Ivan D Valdes , Richard D Hayes , Kecia Duffy , Mansi Chovatia , Jenifer Johnson , Vivian Ng , Luis G Lugones , Han A B Wösten , Igor V Grigoriev , Robin A Ohm

Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.

GigaScience
Avec: Riccardo Baroncelli , José F Cobo-Díaz , Tiziano Benocci , Mao Peng , Evy Battaglia , Sajeet Haridas , William Andreopoulos , Jasmyn Pangilinan , Anna Lipzen , Maxim Koriabine , Diane Bauer , Gaetan Le Floch , Miia R Mäkelä , Elodie Drula , Bernard Henrissat , Igor V Grigoriev , Jo Anne Crouch , Ronald P de Vries , Serenella A Sukno , Michael R Thon

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.

The New phytologist
Avec: Brian Looney , Shingo Miyauchi , Emmanuelle Morin , Elodie Drula , Pierre Emmanuel Courty , Annegret Kohler , Alan Kuo , Jasmyn Pangilinan , Anna Lipzen , Robert Riley , William Andreopoulos , Guifen He , Jenifer Johnson , Matt Nolan , Andrew Tritt , Kerrie W Barry , Igor V Grigoriev , László G Nagy , David Hibbett , Bernard Henrissat , P Brandon Matheny , Jesse Labbé , Francis M Martin

Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms.

The New phytologist
Avec: Annie Lebreton , Nianwu Tang , Alan Kuo , William Andreopoulos , Elodie Drula , Shingo Miyauchi , Kerrie Barry , Alicia Clum , Anna Lipzen , Daniel Mousain , Vivian Ng , Ran Wang , Yucheng Dai , Bernard Henrissat , Igor V Grigoriev , Alexis Guerin-Laguette , Fuqiang Yu , Francis M Martin

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.

Biotechnology for biofuels
Avec: Jennifer L Brown , Candice L Swift , Stephen J Mondo , Susanna Seppala , Asaf Salamov , Vasanth Singan , Bernard Henrissat , Elodie Drula , John K Henske , Samantha Lee , Guifen He , Mi Yan , Kerrie Barry , Igor V Grigoriev , Michelle A O'Malley

Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.

iScience
Avec: Ying Chang , Yan Wang , Stephen Mondo , Steven Ahrendt , William Andreopoulos , Kerrie Barry , Jeff Beard , Gerald L Benny , Sabrina Blankenship , Gregory Bonito , Christina Cuomo , Alessandro Desiro , Kyle A Gervers , Hope Hundley , Alan Kuo , B Franz Lang , Anna Lipzen , Kerry O'Donnell , Jasmyn Pangilinan , Nicole Reynolds , Laura Sandor , Matthew E Smith , Adrian Tsang , Igor V Grigoriev , Jason E Stajich , Joseph W Spatafora

Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors.

Genome biology and evolution
Avec: Yan Wang , Ying Chang , Jericho Ortañez , Jesús F Peña , Derreck Carter-House , Nicole K Reynolds , Matthew E Smith , Gerald Benny , Stephen J Mondo , Asaf Salamov , Anna Lipzen , Jasmyn Pangilinan , Jie Guo , William Andreopolous , Andrew Tritt , Keykhosrow Keymanesh , Mi Yan , Kerrie Barry , Igor V Grigoriev , Joseph W Spatafora , Jason E Stajich

On the origin of bird's nest fungi: phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota).

Molecular phylogenetics and evolution
Avec: Nattapol Kraisitudomsook , Steven Ahrendt , Robert Riley , Anna Lipzen , Chris Daum , Kerrie Barry , Igor V Grigoriev , Teppo Rämä , Francis Martin , Matthew E Smith

Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin.

Ecotoxicology and environmental safety
Avec: Amal Ben Ayed , Imen Akrout , Karima Staita , Quentin Albert , Stéphane Greff , Charlotte Simmler , Steven Ahrendt , Anna Lipzen , Guifen He , Emily Savage , Jean Armengaud , Mélodie Kielbasa , David Navarro , Elodie Drula , Annick Turbé-Doan , Emmanuel Bertrand , Anne Lomascolo , Delphine Chaduli , Craig B Faulds , Mohamed Chamkha , Amina Maalej , Kerrie Barry , Igor V Grigoriev , Francis Martin , Héla Zouari-Mechichi , Giuliano Sciara , Tahar Mechichi , Eric Record

Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.

Molecular biology and evolution
Avec: Francisco J Ruiz-Dueñas , José M Barrasa , Marisol Sánchez-García , Susana Camarero , Shingo Miyauchi , Ana Serrano , Dolores Linde , Rashid Babiker , Elodie Drula , Iván Ayuso-Fernández , Remedios Pacheco , Guillermo Padilla , Patricia Ferreira , Jorge Barriuso , Harald Kellner , Raúl Castanera , Manuel Alfaro , Lucía Ramírez , Antonio G Pisabarro , Robert Riley , Alan Kuo , William Andreopoulos , Jasmyn Pangilinan , Andrew Tritt , Anna Lipzen , Guifen He , Mi Yan , Vivian Ng , Igor V Grigoriev , Daniel Cullen , Francis Martin , Marie-Noëlle Rosso , Bernard Henrissat , David Hibbett , Angel T Martínez

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.

Environmental microbiology
Avec: Hayat Hage , Shingo Miyauchi , Máté Virágh , Elodie Drula , Byoungnam Min , Delphine Chaduli , David Navarro , Anne Favel , Manon Norest , Laurence Lesage-Meessen , Balázs Bálint , Zsolt Merényi , Laura de Eugenio , Emmanuelle Morin , Angel T Martínez , Petr Baldrian , Martina Štursová , María Jesús Martínez , Cenek Novotny , Jon K Magnuson , Joey W Spatafora , Sundy Maurice , Jasmyn Pangilinan , Willian Andreopoulos , Hope Hundley , Hyunsoo Na , Alan Kuo , Kerrie Barry , Anna Lipzen , Bernard Henrissat , Robert Riley , Steven Ahrendt , László G Nagy , Igor V Grigoriev , Francis Martin , Marie-Noëlle Rosso

Genetic determinants of endophytism in the Arabidopsis root mycobiome.

Nature communications
Avec: Fantin Mesny , Shingo Miyauchi , Thorsten Thiergart , Brigitte Pickel , Lea Atanasova , Magnus Karlsson , Bruno Hüttel , Kerrie W Barry , Sajeet Haridas , Cindy Chen , Diane Bauer , William Andreopoulos , Jasmyn Pangilinan , Robert Riley , Anna Lipzen , Alicia Clum , Elodie Drula , Bernard Henrissat , Annegret Kohler , Igor V Grigoriev , Francis M Martin , Stéphane Hacquard

Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi.

Genome biology and evolution
Avec: Nicole K Reynolds , Jason E Stajich , Gerald L Benny , Kerrie Barry , Stephen Mondo , Anna Lipzen , Chris Daum , Igor V Grigoriev , Hsiao-Man Ho , Pedro W Crous , Joseph W Spatafora , Matthew E Smith

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.

Nature communications
Avec: Yogesh K Gupta , Francismar C Marcelino-Guimarães , Cécile Lorrain , Andrew Farmer , Sajeet Haridas , Everton Geraldo Capote Ferreira , Valéria S Lopes-Caitar , Liliane Santana Oliveira , Emmanuelle Morin , Stephanie Widdison , Connor Cameron , Yoshihiro Inoue , Kathrin Thor , Kelly Robinson , Elodie Drula , Bernard Henrissat , Aline Mara Rudsit Bini , Eric Paget , Vasanth Singan , Christopher Daum , Cécile Dorme , Milan van Hoek , Antoine Janssen , Lucie Chandat , Yannick Tarriotte , Jake Richardson , Bernardo do Vale Araújo Melo , Alexander H J Wittenberg , Harrie Schneiders , Stephane Peyrard , Larissa Goulart Zanardo , Valéria Cristina Holtman , Flavie Coulombier-Chauvel , Tobias I Link , Dirk Balmer , André N Müller , Sabine Kind , Stefan Bohnert , Louisa Wirtz , Cindy Chen , Mi Yan , Vivian Ng , Pierrick Gautier , Maurício Conrado Meyer , Ralf Thomas Voegele , Qingli Liu , Igor V Grigoriev , Uwe Conrath , Sérgio H Brommonschenkel , Marco Loehrer , Ulrich Schaffrath , Catherine Sirven , Gabriel Scalliet , Sébastien Duplessis , H Peter van Esse

Spray-induced gene silencing to identify powdery mildew gene targets and processes for powdery mildew control.

Molecular plant pathology
Avec: Amanda G McRae , Jyoti Taneja , Kathleen Yee , Xinyi Shi , Sajeet Haridas , Vasanth Singan , Igor V Grigoriev , Mary C Wildermuth

Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi.

Fungal genetics and biology : FG & B
Avec: Kevin Amses , Alessandro Desiró , Abigail Bryson , Igor Grigoriev , Stephen Mondo , Anna Lipzen , Robert Riley , Vasanth Singan , Paris Salazar-Hamm , Jason King , Elizabeth Ballou , Teresa Pawlowska , Rasheed Adeleke , Gregory Bonito , Jessie Uehling

Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.

The New phytologist
Avec: Lucas Auer , Marc Buée , Laure Fauchery , Vincent Lombard , Kerry W Barry , Alicia Clum , Alex Copeland , Chris Daum , Brian Foster , Vasanth Singan , Yuko Yoshinaga , Christine Martineau , Manuel Alfaro , Federico J Castillo , J Bosco Imbert , Lucia Ramírez , Raoul Castanera , Antonio G Pisabarro , Roger Finlay , Björn Lindahl , Ake Olson , Armand Séguin , Annegret Kohler , Bernard Henrissat , Igor V Grigoriev , Francis M Martin

Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. Citricarpa based on phylogenomic analyses.

Fungal genetics and biology : FG & B
Avec: Valerie A van Ingen-Buijs , Anouk C van Westerhoven , Petros Skiadas , Xander C L Zuijdgeest , Sajeet Haridas , Christopher Daum , Kecia Duffy , Jie Guo , Hope Hundley , Anna Lipzen , Jasmyn Pangilinan , Robert Riley , Jie Wang , Mi Yan , Francis Martin , Kerrie Barry , Igor V Grigoriev , Johannes Z Groenewald , Pedro W Crous , Michael F Seidl

Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.

Scientific data
Avec: Tiffany Oliver , Neha Varghese , Simon Roux , Frederik Schulz , Marcel Huntemann , Alicia Clum , Brian Foster , Bryce Foster , Robert Riley , Robert Egan , Patrick Hajek , Supratim Mukherjee , Galina Ovchinnikova , T B K Reddy , Sara Calhoun , Richard D Hayes , Robin R Rohwer , Zhichao Zhou , Chris Daum , Alex Copeland , I-Min A Chen , Natalia N Ivanova , Nikos C Kyrpides , Nigel J Mouncey , Tijana Glavina Del Rio , Igor V Grigoriev , Steven Hofmeyr , Leonid Oliker , Katherine Yelick , Karthik Anantharaman , Katherine D McMahon , Tanja Woyke , Emiley A Eloe-Fadrosh

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.

Environmental microbiology
Avec: Hao Tan , Annegret Kohler , Renyun Miao , Tianhai Liu , Qiang Zhang , Bo Zhang , Lin Jiang , Yong Wang , Liyuan Xie , Jie Tang , Xiaolin Li , Lixu Liu , Igor V Grigoriev , Chris Daum , Anna Lipzen , Alan Kuo , Emmanuelle Morin , Elodie Drula , Bernard Henrissat , Bo Wang , Zhongqian Huang , Bingcheng Gan , Weihong Peng , Francis M Martin

Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.

The New phytologist
Avec: Éva Almási , Neha Sahu , Krisztina Krizsán , Balázs Bálint , Gábor M Kovács , Brigitta Kiss , Judit Cseklye , Elodie Drula , Bernard Henrissat , István Nagy , Mansi Chovatia , Catherine Adam , Anna Lipzen , Robert Riley , Igor V Grigoriev , László G Nagy

A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.

Communications biology
Avec: Sara Calhoun , Tisza Ann Szeremy Bell , Lukas R Dahlin , Yuliya Kunde , Katherine B Louie , Andrea Kuftin , Daniel Treen , David Dilworth , Sirma Mihaltcheva , Christopher Daum , Benjamin P Bowen , Trent R Northen , Michael T Guarnieri , Shawn R Starkenburg , Igor V Grigoriev

Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.

Current biology : CB
Avec: Rachel A Koch , Gyeong Mee Yoon , Uma K Aryal , Kathleen Lail , Mojgan Amirebrahimi , Anna Lipzen , Robert Riley , Kerrie Barry , Bernard Henrissat , Igor V Grigoriev , Joshua R Herr , M Catherine Aime

Diversity of genomic adaptations to the post-fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development.

The New phytologist
Avec: Andrei S Steindorff , Kyungyong Seong , Akiko Carver , Sara Calhoun , Monika S Fischer , Kyra Stillman , Haowen Liu , Elodie Drula , Bernard Henrissat , Hunter J Simpson , Jonathan S Schilling , Anna Lipzen , Guifen He , Mi Yan , Bill Andreopoulos , Jasmyn Pangilinan , Vivian Ng , Matthew Traxler , Thomas D Bruns , Igor V Grigoriev

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria.

Nature microbiology
Avec: Neha Sahu , Boris Indic , Johanna Wong-Bajracharya , Zsolt Merényi , Huei-Mien Ke , Steven Ahrendt , Tori-Lee Monk , Sándor Kocsubé , Elodie Drula , Anna Lipzen , Balázs Bálint , Bernard Henrissat , Bill Andreopoulos , Francis M Martin , Christoffer Bugge Harder , Daniel Rigling , Kathryn L Ford , Gary D Foster , Jasmyn Pangilinan , Alexie Papanicolaou , Kerrie Barry , Máté Virágh , Maxim Koriabine , Mi Yan , Robert Riley , Simang Champramary , Krista L Plett , Igor V Grigoriev , Isheng Jason Tsai , Jason Slot , György Sipos , Jonathan Plett , László G Nagy

Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi.

Communications biology
Avec: Reid Longley , Aaron Robinson , Julian A Liber , Abigail E Bryson , Demosthenes P Morales , Robert Riley , Stephen J Mondo , Alan Kuo , Yuko Yoshinaga , Chris Daum , Kerrie Barry , Igor V Grigoriev , Alessandro Desirò , Patrick S G Chain , Gregory Bonito

Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.

Molecular biology and evolution
Avec: Jonathan M Plett , Shingo Miyauchi , Emmanuelle Morin , Krista Plett , Johanna Wong-Bajracharya , Maira de Freitas Pereira , Alan Kuo , Bernard Henrissat , Elodie Drula , Dominika Wojtalewicz , Robert Riley , Jasmyn Pangilinan , William Andreopoulos , Chris Daum , Yuko Yoshinaga , Laure Fauchery , Vivian Ng , Anna Lipzen , Kerrie Barry , Vasanth Singan , Jie Guo , Teresa Lebel , Mauricio Dutra Costa , Igor V Grigoriev , Francis Martin , Ian C Anderson , Annegret Kohler

Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations.

Cell genomics
Avec: Christoffer Bugge Harder , Shingo Miyauchi , Máté Virágh , Alan Kuo , Ella Thoen , Bill Andreopoulos , Dabao Lu , Inger Skrede , Elodie Drula , Bernard Henrissat , Emmanuelle Morin , Annegret Kohler , Kerrie Barry , Asaf Salamov , Anna Lipzen , Zsolt Merényi , Botond Hegedüs , Petr Baldrian , Martina Stursova , Hedda Weitz , Andy Taylor , Maxim Koriabine , Emily Savage , Igor V Grigoriev , László G Nagy , Francis Martin , Håvard Kauserud

Comparative genomics of the extremophile

Frontiers in fungal biology
Avec: Sandra V Gomez-Gutierrrez , Wily R Sic-Hernandez , Sajeet Haridas , Joanne Eichenberger , Navneet Kaur , Anna Lipzen , Kerrie Barry , Stephen B Goodwin , Michael Gribskov , Igor V Grigoriev

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers.

Environmental microbiology
Avec: Florian Barbi , Annegret Kohler , Kerrie Barry , Preetisri Baskaran , Chris Daum , Laure Fauchery , Katarina Ihrmark , Alan Kuo , Anna Lipzen , Emmanuelle Morin , Igor V Grigoriev , Bernard Henrissat , Björn D Lindahl , Francis Martin

Genome expansion by allopolyploidization in the fungal strain

Biotechnology for biofuels
Avec: Stephen J Mondo , Diego Javier Jiménez , Ronald E Hector , Anna Lipzen , Mi Yan , Kerrie Barry , Jan Dirk van Elsas , Igor V Grigoriev , Nancy N Nichols

Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.

Microbiology resource announcements
Avec: Caleb Walker , Seunghyun Ryu , Sajeet Haridas , Hyunsoo Na , Matthew Zane , Kerrie Barry , Igor V Grigoriev , Cong T Trinh

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.

The New phytologist
Avec: Gang Wu , Shingo Miyauchi , Emmanuelle Morin , Alan Kuo , Elodie Drula , Torda Varga , Annegret Kohler , Bang Feng , Yang Cao , Anna Lipzen , Christopher Daum , Hope Hundley , Jasmyn Pangilinan , Jenifer Johnson , Kerrie Barry , Vivian Ng , Steven Ahrendt , Byoungnam Min , In-Geol Choi , Hongjae Park , Jonathan M Plett , Jon Magnuson , Joseph W Spatafora , László G Nagy , Bernard Henrissat , Igor V Grigoriev , Zhu-Liang Yang , Jianping Xu , Francis M Martin

Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.

The New phytologist
Avec: Mario E E Franco , Jennifer H Wisecaver , A Elizabeth Arnold , Yu-Ming Ju , Jason C Slot , Steven Ahrendt , Lillian P Moore , Katharine E Eastman , Kelsey Scott , Zachary Konkel , Stephen J Mondo , Alan Kuo , Richard D Hayes , Sajeet Haridas , Bill Andreopoulos , Robert Riley , Jasmyn Pangilinan , Anna Lipzen , Mojgan Amirebrahimi , Juying Yan , Catherine Adam , Keykhosrow Keymanesh , Vivian Ng , Katherine Louie , Trent Northen , Elodie Drula , Bernard Henrissat , Huei-Mei Hsieh , Ken Youens-Clark , François Lutzoni , Jolanta Miadlikowska , Daniel C Eastwood , Richard C Hamelin , Igor V Grigoriev , Jana M U'Ren

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.

Nature communications
Avec: Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler , Marisol Sánchez-García , Emmanuelle Morin , Bill Andreopoulos , Kerrie W Barry , Gregory Bonito , Marc Buée , Akiko Carver , Cindy Chen , Nicolas Cichocki , Alicia Clum , David Culley , Pedro W Crous , Laure Fauchery , Mariangela Girlanda , Richard D Hayes , Zsófia Kéri , Anna Lipzen , Vincent Lombard , Jon Magnuson , François Maillard , Claude Murat , Matt Nolan , Robin A Ohm , Jasmyn Pangilinan , Maíra de Freitas Pereira , Silvia Perotto , Martina Peter , Stephanie Pfister , Robert Riley , Yaron Sitrit , J Benjamin Stielow , Gergely Szöllősi , Lucia Žifčáková , Martina Štursová , Joseph W Spatafora , Leho Tedersoo , Lu-Min Vaario , Akiyoshi Yamada , Mi Yan , Pengfei Wang , Jianping Xu , Tom Bruns , Petr Baldrian , Rytas Vilgalys , Christophe Dunand , Bernard Henrissat , Igor V Grigoriev , David Hibbett , László G Nagy , Francis M Martin

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.

The New phytologist
Avec: Lotus A Lofgren , Nhu H Nguyen , Rytas Vilgalys , Joske Ruytinx , Hui-Ling Liao , Sara Branco , Alan Kuo , Anna Lipzen , William Andreopoulos , Jasmyn Pangilinan , Robert Riley , Hope Hundley , Hyunsoo Na , Kerrie Barry , Igor V Grigoriev , Jason E Stajich , Peter G Kennedy

Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.

Genetics
Avec: Yi-Hong Ke , Sara Branco , Anna L Bazzicalupo , Nhu H Nguyen , Hui-Ling Liao , Peter Kennedy , Thomas D Bruns , Alan Kuo , Kerrie Barry , Igor Grigoriev , Rytas Vilgalys

Genome-scale model development and genomic sequencing of the oleaginous clade

Frontiers in bioengineering and biotechnology
Avec: Jeffrey J Czajka , Yichao Han , Joonhoon Kim , Stephen J Mondo , Beth A Hofstad , AnaLaura Robles , Sajeet Haridas , Robert Riley , Jasmyn Pangilinan , William Andreopoulos , Anna Lipzen , Juying Yan , Mei Wang , Vivian Ng , Igor V Grigoriev , Joseph W Spatafora , Jon K Magnuson , Scott E Baker , Kyle R Pomraning

Diploid-dominant life cycles characterize the early evolution of Fungi.

Proceedings of the National Academy of Sciences of the United States of America
Avec: Kevin R Amses , D Rabern Simmons , Joyce E Longcore , Stephen J Mondo , Kensuke Seto , Gustavo H Jerônimo , Anne E Bonds , C Alisha Quandt , William J Davis , Ying Chang , Brian A Federici , Alan Kuo , Jasmyn Pangilinan , William Andreopoulos , Andrew Tritt , Robert Riley , Hope Hundley , Jenifer Johnson , Anna Lipzen , Kerrie Barry , B Franz Lang , Christina A Cuomo , Nicolas E Buchler , Igor V Grigoriev , Joseph W Spatafora , Jason E Stajich , Timothy Y James

Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.

Communications biology
Avec: Andrei S Steindorff , Maria Victoria Aguilar-Pontes , Aaron J Robinson , Bill Andreopoulos , Alan Kuo , Stephen Mondo , Robert Riley , Robert Otillar , Sajeet Haridas , Anna Lipzen , Jane Grimwood , Jeremy Schmutz , Alicia Clum , Ian D Reid , Marie-Claude Moisan , Gregory Butler , Thi Truc Minh Nguyen , Ken Dewar , Gavin Conant , Elodie Drula , Bernard Henrissat , Colleen Hansel , Steven Singer , Miriam I Hutchinson , Ronald P de Vries , Donald O Natvig , Amy J Powell , Adrian Tsang , Igor V Grigoriev

Réseau de co-auteurs

Igor V Grigoriev 41 collaborations
Anna Lipzen 33 collaborations
Kerrie Barry 24 collaborations
Bernard Henrissat 22 collaborations
Robert Riley 21 collaborations
Jasmyn Pangilinan 20 collaborations
Alan Kuo 19 collaborations
Elodie Drula 19 collaborations
Sajeet Haridas 12 collaborations
Mi Yan 11 collaborations
Vivian Ng 11 collaborations
Chris Daum 10 collaborations
William Andreopoulos 10 collaborations
Francis Martin 9 collaborations
Shingo Miyauchi 9 collaborations
Emmanuelle Morin 9 collaborations
Annegret Kohler 9 collaborations
Alicia Clum 8 collaborations
Francis M Martin 8 collaborations
Guifen He 7 collaborations
Bill Andreopoulos 7 collaborations
László G Nagy 7 collaborations
Stephen J Mondo 7 collaborations
Steven Ahrendt 7 collaborations
Joseph W Spatafora 7 collaborations
Stephen Mondo 6 collaborations
Vasanth Singan 6 collaborations
Hope Hundley 6 collaborations
Sara Calhoun 5 collaborations
Jason E Stajich 5 collaborations
Asaf Salamov 4 collaborations
Cindy Chen 4 collaborations
Richard D Hayes 4 collaborations
Jenifer Johnson 4 collaborations
Andrew Tritt 4 collaborations
Gregory Bonito 4 collaborations
Matthew E Smith 4 collaborations
Christopher Daum 4 collaborations
Laure Fauchery 4 collaborations
Mansi Chovatia 3 collaborations
Jon K Magnuson 3 collaborations
Ronald P de Vries 3 collaborations
Andrei S Steindorff 3 collaborations
Akiko Carver 3 collaborations
Thomas D Bruns 3 collaborations
Robin A Ohm 3 collaborations
Maxim Koriabine 3 collaborations
Kerrie W Barry 3 collaborations
David Hibbett 3 collaborations
Ying Chang 3 collaborations
Jie Guo 3 collaborations
Máté Virágh 3 collaborations
Balázs Bálint 3 collaborations
Zsolt Merényi 3 collaborations
Petr Baldrian 3 collaborations
Hyunsoo Na 3 collaborations
Pedro W Crous 3 collaborations
Yuko Yoshinaga 3 collaborations
Rytas Vilgalys 3 collaborations
Miia R Mäkelä 2 collaborations
Scott E Baker 2 collaborations
Kyra Stillman 2 collaborations
Haowen Liu 2 collaborations
Donald O Natvig 2 collaborations
Miriam I Hutchinson 2 collaborations
Kecia Duffy 2 collaborations
Diane Bauer 2 collaborations
Matt Nolan 2 collaborations
Yan Wang 2 collaborations
Gerald L Benny 2 collaborations
B Franz Lang 2 collaborations
Adrian Tsang 2 collaborations
Nicole K Reynolds 2 collaborations
Keykhosrow Keymanesh 2 collaborations
Emily Savage 2 collaborations
David Navarro 2 collaborations
Delphine Chaduli 2 collaborations
Marisol Sánchez-García 2 collaborations
Manuel Alfaro 2 collaborations
Antonio G Pisabarro 2 collaborations
Marie-Noëlle Rosso 2 collaborations
Angel T Martínez 2 collaborations
Byoungnam Min 2 collaborations
Martina Štursová 2 collaborations
Igor Grigoriev 2 collaborations
Marc Buée 2 collaborations
Vincent Lombard 2 collaborations
Alex Copeland 2 collaborations
Brian Foster 2 collaborations
Neha Sahu 2 collaborations
Catherine Adam 2 collaborations
Mojgan Amirebrahimi 2 collaborations
Johanna Wong-Bajracharya 2 collaborations
Christoffer Bugge Harder 2 collaborations
Jonathan M Plett 2 collaborations
Jon Magnuson 2 collaborations
Jianping Xu 2 collaborations
Juying Yan 2 collaborations
Nhu H Nguyen 2 collaborations
Hui-Ling Liao 2 collaborations
Sara Branco 2 collaborations
Inge Kjærbølling 1 collaboration
Tammi Vesth 1 collaboration
Jens C Frisvad 1 collaboration
Jane L Nybo 1 collaboration
Sebastian Theobald 1 collaboration
Sara Kildgaard 1 collaboration
Thomas Isbrandt Petersen 1 collaboration
Atsushi Sato 1 collaboration
Ellen K Lyhne 1 collaboration
Martin E Kogle 1 collaboration
Ad Wiebenga 1 collaboration
Roland S Kun 1 collaboration
Ronnie J M Lubbers 1 collaboration
Blake A Simmons 1 collaboration
Uffe H Mortensen 1 collaboration
Thomas O Larsen 1 collaboration
Masayuki Machida 1 collaboration
Mikael R Andersen 1 collaboration
Noah Hensen 1 collaboration
Lucas Bonometti 1 collaboration
Ivar Westerberg 1 collaboration
Ioana Onut Brännström 1 collaboration
Sonia Guillou 1 collaboration
Sandrine Cros-Aarteil 1 collaboration
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