Keith Dufault-Thompson

Affiliations

National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, United States.

Publications (16)

Discovery of the gut microbial enzyme responsible for bilirubin reduction to urobilinogen.

bioRxiv : the preprint server for biology

Avec: Brantley Hall , Sophia Levy , Glory Minabou Ndjite , Ashley Weiss , Domenick Braccia , Conor Jenkins , Yiyan Yang , Gabi Arp , Stephenie Abeysinghe , Madison Jermain , Chih Hao Wu , Xiaofang Jiang

Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants.

GigaScience

Avec: Yiyan Yang , Wei Yan , Tian Cai , Lei Xie , Xiaofang Jiang

BilR is a gut microbial enzyme that reduces bilirubin to urobilinogen.

Nature microbiology

Avec: Brantley Hall , Sophia Levy , Gabriela Arp , Aoshu Zhong , Glory Minabou Ndjite , Ashley Weiss , Domenick Braccia , Conor Jenkins , Maggie R Grant , Stephenie Abeysinghe , Yiyan Yang , Madison D Jermain , Chih Hao Wu , Bing Ma , Xiaofang Jiang

Gut Bacteria Metabolize Natural and Synthetic Steroid Hormones via the Reductive OsrABC Pathway.

bioRxiv : the preprint server for biology

Avec: Christian Jacoby , Kaylie Scorza , Lia Ecker , Mary McMillin , Ramanujam Ramaswamy , Anitha Sundararajan , Ashley M Sidebottom , Huaiying Lin , Brantley Hall , Xiaofang Jiang , Samuel H Light

Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants.

mSystems

Avec: Yiyan Yang , Rafaela Salgado Fontenele , Xiaofang Jiang

Annotating microbial functions with ProkFunFind.

mSystems

Avec: Xiaofang Jiang

The three-sided right-handed 𝛽-helix is a versatile fold for glycan interactions.

Glycobiology

Avec: Audrey A Burnim , Xiaofang Jiang

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

BMC biology

Avec: Claude Rispe , Fabrice Legeai , Paul D Nabity , Rosa Fernández , Arinder K Arora , Patrice Baa-Puyoulet , Celeste R Banfill , Leticia Bao , Miquel Barberà , Maryem Bouallègue , Anthony Bretaudeau , Jennifer A Brisson , Federica Calevro , Pierre Capy , Olivier Catrice , Thomas Chertemps , Carole Couture , Laurent Delière , Angela E Douglas , Paula Escuer , Honglin Feng , Astrid Forneck , Toni Gabaldón , Roderic Guigó , Frédérique Hilliou , Silvia Hinojosa-Alvarez , Yi-Min Hsiao , Sylvie Hudaverdian , Emmanuelle Jacquin-Joly , Edward B James , Spencer Johnston , Benjamin Joubard , Gaëlle Le Goff , Gaël Le Trionnaire , Pablo Librado , Shanlin Liu , Eric Lombaert , Hsiao-Ling Lu , Martine Maïbèche , Mohamed Makni , Marina Marcet-Houben , David Martínez-Torres , Camille Meslin , Nicolas Montagné , Nancy A Moran , Daciana Papura , Nicolas Parisot , Yvan Rahbé , Mélanie Ribeiro Lopes , Aida Ripoll-Cladellas , Stéphanie Robin , Céline Roques , Pascale Roux , Julio Rozas , Alejandro Sánchez-Gracia , Jose F Sánchez-Herrero , Didac Santesmasses , Iris Scatoni , Rémy-Félix Serre , Ming Tang , Wenhua Tian , Paul A Umina , Manuella van Munster , Carole Vincent-Monégat , Joshua Wemmer , Alex C C Wilson , Ying Zhang , Chaoyang Zhao , Jing Zhao , Serena Zhao , Xin Zhou , François Delmotte , Denis Tagu

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

BMC biology

Avec: Claude Rispe , Fabrice Legeai , Paul D Nabity , Rosa Fernández , Arinder K Arora , Patrice Baa-Puyoulet , Celeste R Banfill , Leticia Bao , Miquel Barberà , Maryem Bouallègue , Anthony Bretaudeau , Jennifer A Brisson , Federica Calevro , Pierre Capy , Olivier Catrice , Thomas Chertemps , Carole Couture , Laurent Delière , Angela E Douglas , Paula Escuer , Honglin Feng , Astrid Forneck , Toni Gabaldón , Roderic Guigó , Frédérique Hilliou , Silvia Hinojosa-Alvarez , Yi-Min Hsiao , Sylvie Hudaverdian , Emmanuelle Jacquin-Joly , Edward B James , Spencer Johnston , Benjamin Joubard , Gaëlle Le Goff , Gaël Le Trionnaire , Pablo Librado , Shanlin Liu , Eric Lombaert , Hsiao-Ling Lu , Martine Maïbèche , Mohamed Makni , Marina Marcet-Houben , David Martínez-Torres , Camille Meslin , Nicolas Montagné , Nancy A Moran , Daciana Papura , Nicolas Parisot , Yvan Rahbé , Mélanie Ribeiro Lopes , Aida Ripoll-Cladellas , Stéphanie Robin , Céline Roques , Pascale Roux , Julio Rozas , Alejandro Sánchez-Gracia , Jose F Sánchez-Herrero , Didac Santesmasses , Iris Scatoni , Rémy-Félix Serre , Ming Tang , Wenhua Tian , Paul A Umina , Manuella van Munster , Carole Vincent-Monégat , Joshua Wemmer , Alex C C Wilson , Ying Zhang , Chaoyang Zhao , Jing Zhao , Serena Zhao , Xin Zhou , François Delmotte , Denis Tagu

Applications of de Bruijn graphs in microbiome research.

iMeta

Avec: Xiaofang Jiang

Putative host-derived insertions in the genomes of circulating SARS-CoV-2 variants.

bioRxiv : the preprint server for biology

Avec: Yiyan Yang , Rafaela Salgado Fontenele , Xiaofang Jiang

Microbiome Analysis Reveals Diversity and Function of

mSphere

Avec: Zachary T Pimentel , Kayla T Russo , Abigail K Scro , Roxanna M Smolowitz , Marta Gomez-Chiarri , Ying Zhang

Taxonomic distribution and evolutionary analysis of the equol biosynthesis gene cluster.

BMC genomics

Avec: Brantley Hall , Xiaofang Jiang

Reconstruction and Analysis of Thermodynamically Constrained Models Reveal Metabolic Responses of a Deep-Sea Bacterium to Temperature Perturbations.

mSystems

Avec: Chang Nie , Huahua Jian , Fengping Wang , Ying Zhang

Wastewater surveillance uncovers regional diversity and dynamics of SARS-CoV-2 variants across nine states in the USA.

The Science of the total environment

Avec: Rafaela S Fontenele , Yiyan Yang , Erin M Driver , Arjun Magge , Simona Kraberger , Joy M Custer , Erin Cox , Melanie Engstrom Newell , Arvind Varsani , Rolf U Halden , Matthew Scotch , Xiaofang Jiang

Deciphering Phage-Host Specificity Based on the Association of Phage Depolymerases and Bacterial Surface Glycan with Deep Learning.

bioRxiv : the preprint server for biology

Avec: Yiyan Yang , Wei Yan , Tian Cai , Lei Xie , Xiaofang Jiang

Réseau de co-auteurs

Xiaofang Jiang 12 collaborations

Yiyan Yang 7 collaborations

Brantley Hall 4 collaborations

Ying Zhang 4 collaborations

Sophia Levy 2 collaborations

Glory Minabou Ndjite 2 collaborations

Ashley Weiss 2 collaborations

Domenick Braccia 2 collaborations

Conor Jenkins 2 collaborations

Stephenie Abeysinghe 2 collaborations

Chih Hao Wu 2 collaborations

Wei Yan 2 collaborations

Tian Cai 2 collaborations

Lei Xie 2 collaborations

Rafaela Salgado Fontenele 2 collaborations

Claude Rispe 2 collaborations

Fabrice Legeai 2 collaborations

Paul D Nabity 2 collaborations

Rosa Fernández 2 collaborations

Arinder K Arora 2 collaborations

Patrice Baa-Puyoulet 2 collaborations

Celeste R Banfill 2 collaborations

Leticia Bao 2 collaborations

Miquel Barberà 2 collaborations

Maryem Bouallègue 2 collaborations

Anthony Bretaudeau 2 collaborations

Jennifer A Brisson 2 collaborations

Federica Calevro 2 collaborations

Pierre Capy 2 collaborations

Olivier Catrice 2 collaborations

Thomas Chertemps 2 collaborations

Carole Couture 2 collaborations

Laurent Delière 2 collaborations

Angela E Douglas 2 collaborations

Paula Escuer 2 collaborations

Honglin Feng 2 collaborations

Astrid Forneck 2 collaborations

Toni Gabaldón 2 collaborations

Roderic Guigó 2 collaborations

Frédérique Hilliou 2 collaborations

Silvia Hinojosa-Alvarez 2 collaborations

Yi-Min Hsiao 2 collaborations

Sylvie Hudaverdian 2 collaborations

Emmanuelle Jacquin-Joly 2 collaborations

Edward B James 2 collaborations

Spencer Johnston 2 collaborations

Benjamin Joubard 2 collaborations

Gaëlle Le Goff 2 collaborations

Gaël Le Trionnaire 2 collaborations

Pablo Librado 2 collaborations

Shanlin Liu 2 collaborations

Eric Lombaert 2 collaborations

Hsiao-Ling Lu 2 collaborations

Martine Maïbèche 2 collaborations

Mohamed Makni 2 collaborations

Marina Marcet-Houben 2 collaborations

David Martínez-Torres 2 collaborations

Camille Meslin 2 collaborations

Nicolas Montagné 2 collaborations

Nancy A Moran 2 collaborations

Daciana Papura 2 collaborations

Nicolas Parisot 2 collaborations

Yvan Rahbé 2 collaborations

Mélanie Ribeiro Lopes 2 collaborations

Aida Ripoll-Cladellas 2 collaborations

Stéphanie Robin 2 collaborations

Céline Roques 2 collaborations

Pascale Roux 2 collaborations

Julio Rozas 2 collaborations

Alejandro Sánchez-Gracia 2 collaborations

Jose F Sánchez-Herrero 2 collaborations

Didac Santesmasses 2 collaborations

Iris Scatoni 2 collaborations

Rémy-Félix Serre 2 collaborations

Ming Tang 2 collaborations

Wenhua Tian 2 collaborations

Paul A Umina 2 collaborations

Manuella van Munster 2 collaborations

Carole Vincent-Monégat 2 collaborations

Joshua Wemmer 2 collaborations

Alex C C Wilson 2 collaborations

Chaoyang Zhao 2 collaborations

Jing Zhao 2 collaborations

Serena Zhao 2 collaborations

Xin Zhou 2 collaborations

François Delmotte 2 collaborations

Denis Tagu 2 collaborations

Gabi Arp 1 collaboration

Madison Jermain 1 collaboration

Gabriela Arp 1 collaboration

Aoshu Zhong 1 collaboration

Maggie R Grant 1 collaboration

Madison D Jermain 1 collaboration

Bing Ma 1 collaboration

Christian Jacoby 1 collaboration

Kaylie Scorza 1 collaboration

Lia Ecker 1 collaboration

Mary McMillin 1 collaboration

Ramanujam Ramaswamy 1 collaboration

Anitha Sundararajan 1 collaboration

Ashley M Sidebottom 1 collaboration

Huaiying Lin 1 collaboration

Samuel H Light 1 collaboration

Audrey A Burnim 1 collaboration

Zachary T Pimentel 1 collaboration

Kayla T Russo 1 collaboration

Abigail K Scro 1 collaboration

Roxanna M Smolowitz 1 collaboration

Marta Gomez-Chiarri 1 collaboration

Chang Nie 1 collaboration

Huahua Jian 1 collaboration

Fengping Wang 1 collaboration

Rafaela S Fontenele 1 collaboration

Erin M Driver 1 collaboration

Arjun Magge 1 collaboration

Simona Kraberger 1 collaboration

Joy M Custer 1 collaboration

Erin Cox 1 collaboration

Melanie Engstrom Newell 1 collaboration

Arvind Varsani 1 collaboration

Rolf U Halden 1 collaboration

Matthew Scotch 1 collaboration