Jari Saramäki

Affiliations

Department of Computer Science, Aalto University, Konemiehenkatu 2, 02150, Espoo, Finland.

Publications (19)

Generation of self-reactive, shared T-cell receptor α chains in the human thymus.

Journal of autoimmunity

Avec: Nelli Heikkilä , Silja Sormunen , Joonatan Mattila , Taina Härkönen , Mikael Knip , Emmi-Leena Ihantola , Tuure Kinnunen , Ilkka P Mattila , T Petteri Arstila

Effects of spatial smoothing on group-level differences in functional brain networks.

Network neuroscience (Cambridge, Mass.)

Avec: Ana María Triana , Enrico Glerean , Onerva Korhonen

Neuroscience meets behavior: A systematic literature review on magnetic resonance imaging of the brain combined with real-world digital phenotyping.

Human brain mapping

Avec: Ana María Triana , Enrico Glerean , Nicholas Mark Edward Alexander Hayward

Multi-locus interactions and the build-up of reproductive isolation.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Avec: I Satokangas , S H Martin , H Helanterä , J Saramäki , J Kulmuni

Identifying the inheritable component of human thymic T cell repertoire generation in monozygous twins.

European journal of immunology

Avec: Nelli Heikkilä , Reetta Vanhanen , Dawit A Yohannes , Päivi Saavalainen , Seppo Meri , T Sakari Jokiranta , Hanna Jarva , Ilkka P Mattila , David Hamm , Silja Sormunen , T Petteri Arstila

Effect of manual and digital contact tracing on COVID-19 outbreaks: a study on empirical contact data.

Journal of the Royal Society, Interface

Avec: A Barrat , C Cattuto , M Kivelä , S Lehmann , J Saramäki

Human thymic T cell repertoire is imprinted with strong convergence to shared sequences.

Molecular immunology

Avec: Nelli Heikkilä , Reetta Vanhanen , Dawit A Yohannes , Iivari Kleino , Ilkka P Mattila , T Petteri Arstila

Quantifying daily rhythms with non-negative matrix factorization applied to mobile phone data.

Scientific reports

Avec: Talayeh Aledavood , Ilkka Kivimäki , Sune Lehmann ,

Critical Drift in a Neuro-Inspired Adaptive Network.

Physical review letters

Avec: Silja Sormunen , Thilo Gross ,

FreeSurfer 7 quality control: Key problem areas and importance of manual corrections.

NeuroImage

Avec: Vesa Vahermaa , Dogu Baran Aydogan , Tuukka Raij , Reetta-Liina Armio , Heikki Laurikainen , Jaana Suvisaari

Universal patterns in egocentric communication networks.

Nature communications

Avec: Gerardo Iñiguez , Sara Heydari , János Kertész ,

Distinguishing subsampled power laws from other heavy-tailed distributions.

Physical review. E

Avec: Silja Sormunen , Lasse Leskelä ,

Characterization of human T cell receptor repertoire data in eight thymus samples and four related blood samples.

Data in brief

Avec: Nelli Heikkilä , Iivari Kleino , Reetta Vanhanen , Dawit A Yohannes , Ilkka P Mattila , T Petteri Arstila

Circadian rhythms in temporal-network connectivity.

Chaos (Woodbury, N.Y.)

Avec: T Alakörkkö , J Saramäki

Peripheral differentiation patterns of human T cells.

European journal of immunology

Avec: Nelli Heikkilä , Iivo Hetemäki , Silja Sormunen , Helena Isoniemi , Eliisa Kekäläinen , T Petteri Arstila

Mobility Signatures: A Tool for Characterizing Cities Using Intercity Mobility Flows.

Frontiers in big data

Avec: Maryam Astero , Zhiren Huang ,

Analysis of thymic generation of shared T-cell receptor α repertoire associated with recognition of tumor antigens shows no preference for neoantigens over wild-type antigens.

Cancer medicine

Avec: Joonatan Mattila , Silja Sormunen , Nelli Heikkilä , Ilkka P Mattila , T Petteri Arstila

Herd immunity and epidemic size in networks with vaccination homophily.

Physical review. E

Avec: Takayuki Hiraoka , Abbas K Rizi , Mikko Kivelä ,

Longitudinal single-subject neuroimaging study reveals effects of daily environmental, physiological, and lifestyle factors on functional brain connectivity.

PLoS biology

Avec: Ana María Triana , Juha Salmi , Nicholas Mark Edward Alexander Hayward , Enrico Glerean

Réseau de co-auteurs

Nelli Heikkilä 6 collaborations

Silja Sormunen 6 collaborations

T Petteri Arstila 6 collaborations

Ilkka P Mattila 5 collaborations

Ana María Triana 3 collaborations

Enrico Glerean 3 collaborations

J Saramäki 3 collaborations

Reetta Vanhanen 3 collaborations

Dawit A Yohannes 3 collaborations

Joonatan Mattila 2 collaborations

Nicholas Mark Edward Alexander Hayward 2 collaborations

Iivari Kleino 2 collaborations

Taina Härkönen 1 collaboration

Mikael Knip 1 collaboration

Emmi-Leena Ihantola 1 collaboration

Tuure Kinnunen 1 collaboration

Onerva Korhonen 1 collaboration

I Satokangas 1 collaboration

S H Martin 1 collaboration

H Helanterä 1 collaboration

J Kulmuni 1 collaboration

Päivi Saavalainen 1 collaboration

Seppo Meri 1 collaboration

T Sakari Jokiranta 1 collaboration

Hanna Jarva 1 collaboration

David Hamm 1 collaboration

A Barrat 1 collaboration

C Cattuto 1 collaboration

M Kivelä 1 collaboration

S Lehmann 1 collaboration

Talayeh Aledavood 1 collaboration

Ilkka Kivimäki 1 collaboration

Sune Lehmann 1 collaboration

Thilo Gross 1 collaboration

Vesa Vahermaa 1 collaboration

Dogu Baran Aydogan 1 collaboration

Tuukka Raij 1 collaboration

Reetta-Liina Armio 1 collaboration

Heikki Laurikainen 1 collaboration

Jaana Suvisaari 1 collaboration

Gerardo Iñiguez 1 collaboration

Sara Heydari 1 collaboration

János Kertész 1 collaboration

Lasse Leskelä 1 collaboration

T Alakörkkö 1 collaboration

Iivo Hetemäki 1 collaboration

Helena Isoniemi 1 collaboration

Eliisa Kekäläinen 1 collaboration

Maryam Astero 1 collaboration

Zhiren Huang 1 collaboration

Takayuki Hiraoka 1 collaboration

Abbas K Rizi 1 collaboration

Mikko Kivelä 1 collaboration

Juha Salmi 1 collaboration