Gaia Andreoletti

Affiliations

Department of Plant and Microbial Biology, University of California, Berkeley, California.

ORCID: 0000-0002-0452-0009

Publications (17)

VIPdb, a genetic Variant Impact Predictor Database.

Human mutation

Avec: Zhiqiang Hu , Changhua Yu , Mabel Furutsuki , Melissa Ly , Roger Hoskins , Aashish N Adhikari , Steven E Brenner

Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell Identity.

Cell systems

Avec: Woo Jun Shim , Enakshi Sinniah , Jun Xu , Burcu Vitrinel , Michael Alexanian , Sophie Shen , Yuliangzi Sun , Brad Balderson , Carles Boix , Guangdun Peng , Naihe Jing , Yuliang Wang , Manolis Kellis , Patrick P L Tam , Aaron Smith , Michael Piper , Lionel Christiaen , Quan Nguyen , Mikael Bodén , Nathan J Palpant

A transcriptional switch governs fibroblast activation in heart disease.

Nature

Avec: Michael Alexanian , Pawel F Przytycki , Rudi Micheletti , Arun Padmanabhan , Lin Ye , Joshua G Travers , Barbara Gonzalez-Teran , Ana Catarina Silva , Qiming Duan , Sanjeev S Ranade , Franco Felix , Ricardo Linares-Saldana , Li Li , Clara Youngna Lee , Nandhini Sadagopan , Angelo Pelonero , Yu Huang , Rajan Jain , Timothy A McKinsey , Michael G Rosenfeld , Casey A Gifford , Katherine S Pollard , Saptarsi M Haldar , Deepak Srivastava

Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.

Human mutation

Avec: Castrense Savojardo , Maria Petrosino , Giulia Babbi , Samuele Bovo , Carles Corbi-Verge , Rita Casadio , Piero Fariselli , Lukas Folkman , Aditi Garg , Mostafa Karimi , Panagiotis Katsonis , Philip M Kim , Olivier Lichtarge , Pier Luigi Martelli , Alessandra Pasquo , Debnath Pal , Yang Shen , Alexey V Strokach , Paola Turina , Yaoqi Zhou , Steven E Brenner , Roberta Chiaraluce , Valerio Consalvi , Emidio Capriotti

Microbiome Preterm Birth DREAM Challenge: Crowdsourcing Machine Learning Approaches to Advance Preterm Birth Research.

medRxiv : the preprint server for health sciences

Avec: Jonathan L Golob , Tomiko T Oskotsky , Alice S Tang , Alennie Roldan , Verena Chung , Connie W Y Ha , Ronald J Wong , Kaitlin J Flynn , Antonio Parraga-Leo , Camilla Wibrand , Samuel S Minot , Idit Kosti , Julie Bletz , Amber Nelson , Jifan Gao , Zhoujingpeng Wei , Guanhua Chen , Zheng-Zheng Tang , Pierfrancesco Novielli , Donato Romano , Ester Pantaleo , Nicola Amoroso , Alfonso Monaco , Mirco Vacca , Maria De Angelis , Roberto Bellotti , Sabina Tangaro , Abigail Kuntzleman , Isaac Bigcraft , Stephen Techtmann , Daehun Bae , Eunyoung Kim , Jongbum Jeon , Soobok Joe , Auteur inconnu , Kevin R Theis , Sherrianne Ng , Yun S Lee Li , Patricia Diaz-Gimeno , Phillip R Bennett , David A MacIntyre , Gustavo Stolovitzky , Susan V Lynch , Jake Albrecht , Nardhy Gomez-Lopez , Roberto Romero , David K Stevenson , Nima Aghaeepour , Adi L Tarca , James C Costello , Marina Sirota

Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5.

Human mutation

Avec: Alexander Miguel Monzon , Marco Carraro , Luigi Chiricosta , Francesco Reggiani , James Han , Kivilcim Ozturk , Yanran Wang , Maximilian Miller , Yana Bromberg , Emidio Capriotti , Castrense Savojardo , Giulia Babbi , Pier L Martelli , Rita Casadio , Panagiotis Katsonis , Olivier Lichtarge , Hannah Carter , Maria Kousi , Nicholas Katsanis , John Moult , Steven E Brenner , Carlo Ferrari , Emanuela Leonardi , Silvio C E Tosatto

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19.

Scientific reports

Avec: Brian L Le , Tomiko Oskotsky , Albert Vallejo-Gracia , Romel Rosales , Katharine Yu , Idit Kosti , Kristoffer E Leon , Daniel G Bunis , Christine Li , G Renuka Kumar , Kris M White , Adolfo García-Sastre , Melanie Ott , Marina Sirota

Loss of Mtm1 causes cholestatic liver disease in a model of X-linked myotubular myopathy.

The Journal of clinical investigation

Avec: Sophie Karolczak , Ashish R Deshwar , Evangelina Aristegui , Binita M Kamath , Michael W Lawlor , Jonathan Volpatti , Jillian L Ellis , Chunyue Yin , James J Dowling

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research.

Cell reports. Medicine

Avec: Jonathan L Golob , Tomiko T Oskotsky , Alice S Tang , Alennie Roldan , Verena Chung , Connie W Y Ha , Ronald J Wong , Kaitlin J Flynn , Antonio Parraga-Leo , Camilla Wibrand , Samuel S Minot , Boris Oskotsky , Idit Kosti , Julie Bletz , Amber Nelson , Jifan Gao , Zhoujingpeng Wei , Guanhua Chen , Zheng-Zheng Tang , Pierfrancesco Novielli , Donato Romano , Ester Pantaleo , Nicola Amoroso , Alfonso Monaco , Mirco Vacca , Maria De Angelis , Roberto Bellotti , Sabina Tangaro , Abigail Kuntzleman , Isaac Bigcraft , Stephen Techtmann , Daehun Bae , Eunyoung Kim , Jongbum Jeon , Soobok Joe , Auteur inconnu , Kevin R Theis , Sherrianne Ng , Yun S Lee , Patricia Diaz-Gimeno , Phillip R Bennett , David A MacIntyre , Gustavo Stolovitzky , Susan V Lynch , Jake Albrecht , Nardhy Gomez-Lopez , Roberto Romero , David K Stevenson , Nima Aghaeepour , Adi L Tarca , James C Costello , Marina Sirota

VMAP: Vaginal Microbiome Atlas during Pregnancy.

JAMIA open

Avec: Antonio Parraga-Leo , Tomiko T Oskotsky , Boris Oskotsky , Camilla Wibrand , Alennie Roldan , Alice S Tang , Connie W Y Ha , Ronald J Wong , Samuel S Minot , Idit Kosti , Kevin R Theis , Sherrianne Ng , Yun S Lee , Patricia Diaz-Gimeno , Phillip R Bennett , David A MacIntyre , Susan V Lynch , Roberto Romero , Adi L Tarca , David K Stevenson , Nima Aghaeepour , Jonathan L Golob , Marina Sirota

Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge.

Human mutation

Avec: Marco Carraro , Alexander Miguel Monzon , Luigi Chiricosta , Francesco Reggiani , Maria Cristina Aspromonte , Mariagrazia Bellini , Kymberleigh Pagel , Yuxiang Jiang , Predrag Radivojac , Kunal Kundu , Lipika R Pal , Yizhou Yin , Ivan Limongelli , John Moult , Stephen J Wilson , Panagiotis Katsonis , Olivier Lichtarge , Jingqi Chen , Yaqiong Wang , Zhiqiang Hu , Steven E Brenner , Carlo Ferrari , Alessandra Murgia , Silvio C E Tosatto , Emanuela Leonardi

Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation.

Human mutation

Avec: Lipika R Pal , John Moult , Steven E Brenner

Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016.

Human mutation

Avec: Wyatt T Clark , Laura Kasak , Constantina Bakolitsa , Zhiqiang Hu , Giulia Babbi , Yana Bromberg , Rita Casadio , Roland Dunbrack , Lukas Folkman , Colby T Ford , David Jones , Panagiotis Katsonis , Kunal Kundu , Olivier Lichtarge , Pier L Martelli , Sean D Mooney , Conor Nodzak , Lipika R Pal , Predrag Radivojac , Castrense Savojardo , Xinghua Shi , Yaoqi Zhou , Aneeta Uppal , Qifang Xu , Yizhou Yin , Vikas Pejaver , Meng Wang , Liping Wei , John Moult , Guoying Karen Yu , Steven E Brenner , Jonathan H LeBowitz

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19.

Research square

Avec: Brian L Le , Tomiko Oskotsky , Albert Vallejo-Gracia , Romel Rosales , Katharine Yu , Idit Kosti , Kristoffer E Leon , Daniel G Bunis , Christine Li , G Renuka Kumar , Kris M White , Adolfo García-Sastre , Melanie Ott , Marina Sirota

Functional screening in human HSPCs identifies optimized protein-based enhancers of Homology Directed Repair.

Nature communications

Avec: Juan A Perez-Bermejo , Oghene Efagene , William M Matern , Jeffrey K Holden , Shaheen Kabir , Glen M Chew , Eniola Catton , Craig L Ennis , Angelica Garcia , Trevor L Gerstenberg , Kaisle A Hill , Aayami Jain , Kristina Krassovsky , Cassandra D Lalisan , Daniel Lord , B Joy Quejarro , Jade Sales-Lee , Meet Shah , Brian J Silva , Jason Skowronski , Yuri G Strukov , Joshua Thomas , Michael Veraz , Twaritha Vijay , Kirby A Wallace , Yue Yuan , Jane L Grogan , Beeke Wienert , Premanjali Lahiri , Sebastian Treusch , Daniel P Dever , Vanessa B Soros , James R Partridge , Kristen L Seim

Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.

Human mutation

Avec: Alin Voskanian , Panagiotis Katsonis , Olivier Lichtarge , Vikas Pejaver , Predrag Radivojac , Sean D Mooney , Emidio Capriotti , Yana Bromberg , Yanran Wang , Max Miller , Pier Luigi Martelli , Castrense Savojardo , Giulia Babbi , Rita Casadio , Yue Cao , Yuanfei Sun , Yang Shen , Aditi Garg , Debnath Pal , Yao Yu , Chad D Huff , Sean V Tavtigian , Erin Young , Susan L Neuhausen , Elad Ziv , Lipika R Pal , Steven E Brenner , Maricel G Kann

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth.

Cell reports. Medicine

Avec: Adi L Tarca , Bálint Ármin Pataki , Roberto Romero , Marina Sirota , Yuanfang Guan , Rintu Kutum , Nardhy Gomez-Lopez , Bogdan Done , Gaurav Bhatti , Thomas Yu , Tinnakorn Chaiworapongsa , Auteur inconnu , Sonia S Hassan , Chaur-Dong Hsu , Nima Aghaeepour , Gustavo Stolovitzky , Istvan Csabai , James C Costello

Réseau de co-auteurs

Steven E Brenner 7 collaborations

Marina Sirota 6 collaborations

Panagiotis Katsonis 5 collaborations

Olivier Lichtarge 5 collaborations

Idit Kosti 5 collaborations

Castrense Savojardo 4 collaborations

Giulia Babbi 4 collaborations

Rita Casadio 4 collaborations

Roberto Romero 4 collaborations

Nima Aghaeepour 4 collaborations

Adi L Tarca 4 collaborations

John Moult 4 collaborations

Lipika R Pal 4 collaborations

Zhiqiang Hu 3 collaborations

Emidio Capriotti 3 collaborations

Jonathan L Golob 3 collaborations

Tomiko T Oskotsky 3 collaborations

Alice S Tang 3 collaborations

Alennie Roldan 3 collaborations

Connie W Y Ha 3 collaborations

Ronald J Wong 3 collaborations

Antonio Parraga-Leo 3 collaborations

Camilla Wibrand 3 collaborations

Samuel S Minot 3 collaborations

None None 3 collaborations

Kevin R Theis 3 collaborations

Sherrianne Ng 3 collaborations

Patricia Diaz-Gimeno 3 collaborations

Phillip R Bennett 3 collaborations

David A MacIntyre 3 collaborations

Gustavo Stolovitzky 3 collaborations

Susan V Lynch 3 collaborations

Nardhy Gomez-Lopez 3 collaborations

David K Stevenson 3 collaborations

James C Costello 3 collaborations

Yana Bromberg 3 collaborations

Predrag Radivojac 3 collaborations

Michael Alexanian 2 collaborations

Lukas Folkman 2 collaborations

Aditi Garg 2 collaborations

Pier Luigi Martelli 2 collaborations

Debnath Pal 2 collaborations

Yang Shen 2 collaborations

Yaoqi Zhou 2 collaborations

Verena Chung 2 collaborations

Kaitlin J Flynn 2 collaborations

Julie Bletz 2 collaborations

Amber Nelson 2 collaborations

Jifan Gao 2 collaborations

Zhoujingpeng Wei 2 collaborations

Guanhua Chen 2 collaborations

Zheng-Zheng Tang 2 collaborations

Pierfrancesco Novielli 2 collaborations

Donato Romano 2 collaborations

Ester Pantaleo 2 collaborations

Nicola Amoroso 2 collaborations

Alfonso Monaco 2 collaborations

Mirco Vacca 2 collaborations

Maria De Angelis 2 collaborations

Roberto Bellotti 2 collaborations

Sabina Tangaro 2 collaborations

Abigail Kuntzleman 2 collaborations

Isaac Bigcraft 2 collaborations

Stephen Techtmann 2 collaborations

Daehun Bae 2 collaborations

Eunyoung Kim 2 collaborations

Jongbum Jeon 2 collaborations

Soobok Joe 2 collaborations

Jake Albrecht 2 collaborations

Alexander Miguel Monzon 2 collaborations

Marco Carraro 2 collaborations

Luigi Chiricosta 2 collaborations

Francesco Reggiani 2 collaborations

Yanran Wang 2 collaborations

Pier L Martelli 2 collaborations

Carlo Ferrari 2 collaborations

Emanuela Leonardi 2 collaborations

Silvio C E Tosatto 2 collaborations

Brian L Le 2 collaborations

Tomiko Oskotsky 2 collaborations

Albert Vallejo-Gracia 2 collaborations

Romel Rosales 2 collaborations

Katharine Yu 2 collaborations

Kristoffer E Leon 2 collaborations

Daniel G Bunis 2 collaborations

Christine Li 2 collaborations

G Renuka Kumar 2 collaborations

Kris M White 2 collaborations

Adolfo García-Sastre 2 collaborations

Melanie Ott 2 collaborations

Boris Oskotsky 2 collaborations

Yun S Lee 2 collaborations

Kunal Kundu 2 collaborations

Yizhou Yin 2 collaborations

Sean D Mooney 2 collaborations

Vikas Pejaver 2 collaborations

Changhua Yu 1 collaboration

Mabel Furutsuki 1 collaboration

Melissa Ly 1 collaboration

Roger Hoskins 1 collaboration

Aashish N Adhikari 1 collaboration

Woo Jun Shim 1 collaboration

Enakshi Sinniah 1 collaboration

Jun Xu 1 collaboration

Burcu Vitrinel 1 collaboration

Sophie Shen 1 collaboration

Yuliangzi Sun 1 collaboration

Brad Balderson 1 collaboration

Carles Boix 1 collaboration

Guangdun Peng 1 collaboration

Naihe Jing 1 collaboration

Yuliang Wang 1 collaboration

Manolis Kellis 1 collaboration

Patrick P L Tam 1 collaboration

Aaron Smith 1 collaboration

Michael Piper 1 collaboration

Lionel Christiaen 1 collaboration

Quan Nguyen 1 collaboration

Mikael Bodén 1 collaboration

Nathan J Palpant 1 collaboration

Pawel F Przytycki 1 collaboration

Rudi Micheletti 1 collaboration

Arun Padmanabhan 1 collaboration

Lin Ye 1 collaboration

Joshua G Travers 1 collaboration

Barbara Gonzalez-Teran 1 collaboration

Ana Catarina Silva 1 collaboration

Qiming Duan 1 collaboration

Sanjeev S Ranade 1 collaboration

Franco Felix 1 collaboration

Ricardo Linares-Saldana 1 collaboration

Li Li 1 collaboration

Clara Youngna Lee 1 collaboration

Nandhini Sadagopan 1 collaboration

Angelo Pelonero 1 collaboration

Yu Huang 1 collaboration

Rajan Jain 1 collaboration

Timothy A McKinsey 1 collaboration

Michael G Rosenfeld 1 collaboration

Casey A Gifford 1 collaboration

Katherine S Pollard 1 collaboration

Saptarsi M Haldar 1 collaboration

Deepak Srivastava 1 collaboration

Maria Petrosino 1 collaboration

Samuele Bovo 1 collaboration

Carles Corbi-Verge 1 collaboration

Piero Fariselli 1 collaboration

Mostafa Karimi 1 collaboration

Philip M Kim 1 collaboration

Alessandra Pasquo 1 collaboration

Alexey V Strokach 1 collaboration

Paola Turina 1 collaboration

Roberta Chiaraluce 1 collaboration

Valerio Consalvi 1 collaboration

Yun S Lee Li 1 collaboration

James Han 1 collaboration

Kivilcim Ozturk 1 collaboration

Maximilian Miller 1 collaboration

Hannah Carter 1 collaboration

Maria Kousi 1 collaboration

Nicholas Katsanis 1 collaboration

Sophie Karolczak 1 collaboration

Ashish R Deshwar 1 collaboration

Evangelina Aristegui 1 collaboration

Binita M Kamath 1 collaboration

Michael W Lawlor 1 collaboration

Jonathan Volpatti 1 collaboration

Jillian L Ellis 1 collaboration

Chunyue Yin 1 collaboration

James J Dowling 1 collaboration

Maria Cristina Aspromonte 1 collaboration

Mariagrazia Bellini 1 collaboration

Kymberleigh Pagel 1 collaboration

Yuxiang Jiang 1 collaboration

Ivan Limongelli 1 collaboration

Stephen J Wilson 1 collaboration

Jingqi Chen 1 collaboration

Yaqiong Wang 1 collaboration

Alessandra Murgia 1 collaboration

Wyatt T Clark 1 collaboration

Laura Kasak 1 collaboration

Constantina Bakolitsa 1 collaboration

Roland Dunbrack 1 collaboration

Colby T Ford 1 collaboration

David Jones 1 collaboration

Conor Nodzak 1 collaboration

Xinghua Shi 1 collaboration

Aneeta Uppal 1 collaboration

Qifang Xu 1 collaboration

Meng Wang 1 collaboration

Liping Wei 1 collaboration

Guoying Karen Yu 1 collaboration

Jonathan H LeBowitz 1 collaboration

Juan A Perez-Bermejo 1 collaboration

Oghene Efagene 1 collaboration

William M Matern 1 collaboration

Jeffrey K Holden 1 collaboration

Shaheen Kabir 1 collaboration

Glen M Chew 1 collaboration

Eniola Catton 1 collaboration

Craig L Ennis 1 collaboration

Angelica Garcia 1 collaboration

Trevor L Gerstenberg 1 collaboration

Kaisle A Hill 1 collaboration

Aayami Jain 1 collaboration

Kristina Krassovsky 1 collaboration

Cassandra D Lalisan 1 collaboration

Daniel Lord 1 collaboration

B Joy Quejarro 1 collaboration

Jade Sales-Lee 1 collaboration

Meet Shah 1 collaboration

Brian J Silva 1 collaboration

Jason Skowronski 1 collaboration

Yuri G Strukov 1 collaboration

Joshua Thomas 1 collaboration

Michael Veraz 1 collaboration

Twaritha Vijay 1 collaboration

Kirby A Wallace 1 collaboration

Yue Yuan 1 collaboration

Jane L Grogan 1 collaboration

Beeke Wienert 1 collaboration

Premanjali Lahiri 1 collaboration

Sebastian Treusch 1 collaboration

Daniel P Dever 1 collaboration

Vanessa B Soros 1 collaboration

James R Partridge 1 collaboration

Kristen L Seim 1 collaboration

Alin Voskanian 1 collaboration

Max Miller 1 collaboration

Yue Cao 1 collaboration

Yuanfei Sun 1 collaboration

Yao Yu 1 collaboration

Chad D Huff 1 collaboration

Sean V Tavtigian 1 collaboration

Erin Young 1 collaboration

Susan L Neuhausen 1 collaboration

Elad Ziv 1 collaboration

Maricel G Kann 1 collaboration

Bálint Ármin Pataki 1 collaboration

Yuanfang Guan 1 collaboration

Rintu Kutum 1 collaboration

Bogdan Done 1 collaboration

Gaurav Bhatti 1 collaboration

Thomas Yu 1 collaboration

Tinnakorn Chaiworapongsa 1 collaboration

Sonia S Hassan 1 collaboration

Chaur-Dong Hsu 1 collaboration

Istvan Csabai 1 collaboration