Frédéric Rimet

Affiliations

INRAE, UMR Carrtel, 75 av. de Corzent, FR-74203 Thonon les Bains cedex, France; University Savoie Mont-Blanc, UMR CARRTEL, FR-73370 Le Bourget du Lac, France.

Publications (21)

DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species.

The Science of the total environment

Avec: Javier Pérez-Burillo , Rosa Trobajo , Manel Leira , François Keck , Javier Sigró , David G Mann

Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring.

The Science of the total environment

Avec: Maria Mercedes Nicolosi Gelis , Alexis Canino , Agnès Bouchez , Isabelle Domaizon , Christophe Laplace-Treyture , Benjamin Alric

Diat.barcode, an open-access curated barcode library for diatoms.

Scientific reports

Avec: Evgenuy Gusev , Maria Kahlert , Martyn G Kelly , Maxim Kulikovskiy , Yevhen Maltsev , David G Mann , Martin Pfannkuchen , Rosa Trobajo , Valentin Vasselon , Jonas Zimmermann , Agnès Bouchez

Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects.

Molecular ecology resources

Avec: Sinziana F Rivera , Valentin Vasselon , Marine Vautier , Isabelle Domaizon , Agnès Bouchez

Ripe for reassessment: A synthesis of available molecular data for the speciose diatom family Bacillariaceae.

Molecular phylogenetics and evolution

Avec: David G Mann , Rosa Trobajo , Shinya Sato , Chunlian Li , Andrzej Witkowski , Matt P Ashworth , Ruth M Hollands , Edward C Theriot

Morphology and phylogeny of

PhytoKeys

Avec: Rafał M Olszyński , Piotr K Zakrzewski , Julia Sulkowska , Łukasz Peszek , Joanna Żelazna-Wieczorek

The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean).

Ecology and evolution

Avec: Kálmán Tapolczai , Valentin Vasselon , Agnès Bouchez , Csilla Stenger-Kovács , Judit Padisák ,

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work.

The Science of the total environment

Avec: Hannah Weigand , Arne J Beermann , Fedor Čiampor , Filipe O Costa , Zoltán Csabai , Sofia Duarte , Matthias F Geiger , Michał Grabowski , Björn Rulik , Malin Strand , Nikolaus Szucsich , Alexander M Weigand , Endre Willassen , Sofia A Wyler , Agnès Bouchez , Angel Borja , Zuzana Čiamporová-Zaťovičová , Sónia Ferreira , Klaas-Douwe B Dijkstra , Ursula Eisendle , Jörg Freyhof , Piotr Gadawski , Wolfram Graf , Arne Haegerbaeumer , Berry B van der Hoorn , Bella Japoshvili , Lujza Keresztes , Emre Keskin , Florian Leese , Jan N Macher , Tomasz Mamos , Guy Paz , Vladimir Pešić , Daniela Maric Pfannkuchen , Martin Andreas Pfannkuchen , Benjamin W Price , Buki Rinkevich , Marcos A L Teixeira , Gábor Várbíró , Torbjørn Ekrem

Cyprus' diatom diversity and the association of environmental and anthropogenic influences for ecological assessment of rivers using DNA metabarcoding.

Chemosphere

Avec: Panayiota Pissaridou , Valentin Vasselon , Andreas Christou , Teofana Chonova , Athina Papatheodoulou , Katerina Drakou , Iakovos Tziortzis , Gerald Dörflinger , Frederic Rimet , Agnes Bouchez , Marlen I Vasquez

DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region.

The Science of the total environment

Avec: Nico Salmaso , Valentin Vasselon , Marine Vautier , Tina Elersek , Adriano Boscaini , Claudio Donati , Marco Moretto , Massimo Pindo , Giulia Riccioni , Erika Stefani , Camilla Capelli , Fabio Lepori , Rainer Kurmayer , Ute Mischke , Aleksandra Krivograd Klemenčič , Katarina Novak , Claudia Greco , Giorgio Franzini , Giampaolo Fusato , Federica Giacomazzi , Alessia Lea , Silvia Menegon , Chiara Zampieri , Arianna Macor , Damiano Virgilio , Elisa Zanut , Raffaella Zorza , Fabio Buzzi , Isabelle Domaizon

Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers.

The Science of the total environment

Avec: Javier Pérez-Burillo , Rosa Trobajo , Valentin Vasselon , Agnès Bouchez , David G Mann

A taxonomy-free approach based on machine learning to assess the quality of rivers with diatoms.

The Science of the total environment

Avec: Maria João Feio , Sónia R Q Serra , Andreia Mortágua , Agnès Bouchez , Valentin Vasselon , Salomé F P Almeida

Environmental filtering and limiting similarity as main forces driving diatom community structure in Mediterranean and continental temporary and perennial streams.

The Science of the total environment

Avec: Gábor Várbíró , Gábor Borics , Maria Helena Novais , Maria Manuela Morais , Agnès Bouchez , Kálmán Tapolczai , István Bácsi , Philippe Usseglio-Polatera , Viktória B-Béres

Diatom DNA metabarcoding to assess the effect of natural radioactivity in mineral springs on ASV of benthic diatom communities.

The Science of the total environment

Avec: Lory-Anne Baker , Aude Beauger , Sofia Kolovi , Olivier Voldoire , Elisabeth Allain , Vincent Breton , Patrick Chardon , Didier Miallier , Céline Bailly , Gilles Montavon , Agnès Bouchez , Cécile Chardon , Valentin Vasselon , Luc Ector , Carlos E Wetzel , David G Biron

Diatom endemism and taxonomic turnover: Assessment in high-altitude alpine lakes covering a large geographical range.

The Science of the total environment

Avec: Eveline Pinseel , Agnès Bouchez , Bella Japoshvili , Levan Mumladze

Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: Test on macroinvertebrate communities in rivers.

The Science of the total environment

Avec: Sinziana F Rivera , Valentin Vasselon , Nathalie Mary , Olivier Monnier , Fréderic Rimet , Agnès Bouchez

Monitoring the ecological status of rivers with diatom eDNA metabarcoding: A comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index.

Molecular ecology

Avec: Laure Apothéloz-Perret-Gentil , Agnès Bouchez , Tristan Cordier , Arielle Cordonier , Julie Guéguen , Frederic Rimet , Valentin Vasselon , Jan Pawlowski

Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding.

Frontiers in microbiology

Avec: Teofana Chonova , Rainer Kurmayer , Jérôme Labanowski , Valentin Vasselon , François Keck , Paul Illmer , Agnès Bouchez

Connecting the morphological and molecular species concepts to facilitate species identification within the genus Fragilaria (Bacillariophyta).

Journal of phycology

Avec: Maria Kahlert , Martyn G Kelly , David G Mann , Shinya Sato , Agnès Bouchez , François Keck

Combined Earth observations reveal the sequence of conditions leading to a large algal bloom in Lake Geneva.

Communications earth & environment

Avec: Abolfazl Irani Rahaghi , Daniel Odermatt , Orlane Anneville , Oscar Sepúlveda Steiner , Rafael Sebastian Reiss , Marina Amadori , Marco Toffolon , Stéphan Jacquet , Tristan Harmel , Mortimer Werther , Frédéric Soulignac , Etienne Dambrine , Didier Jézéquel , Christine Hatté , Viet Tran-Khac , Serena Rasconi , Damien Bouffard

Environmental filtering and mass effect are two important processes driving lake benthic diatoms: Results of a DNA metabarcoding study in a large lake.

Molecular ecology

Avec: Alexis Canino , Teofana Chonova , Julie Guéguen , Agnès Bouchez

Réseau de co-auteurs

Agnès Bouchez 15 collaborations

Valentin Vasselon 11 collaborations

David G Mann 5 collaborations

Rosa Trobajo 4 collaborations

François Keck 3 collaborations

Isabelle Domaizon 3 collaborations

Teofana Chonova 3 collaborations

Javier Pérez-Burillo 2 collaborations

Alexis Canino 2 collaborations

Maria Kahlert 2 collaborations

Martyn G Kelly 2 collaborations

Sinziana F Rivera 2 collaborations

Marine Vautier 2 collaborations

Shinya Sato 2 collaborations

Kálmán Tapolczai 2 collaborations

Bella Japoshvili 2 collaborations

Gábor Várbíró 2 collaborations

Frederic Rimet 2 collaborations

Rainer Kurmayer 2 collaborations

Julie Guéguen 2 collaborations

Manel Leira 1 collaboration

Javier Sigró 1 collaboration

Maria Mercedes Nicolosi Gelis 1 collaboration

Christophe Laplace-Treyture 1 collaboration

Benjamin Alric 1 collaboration

Evgenuy Gusev 1 collaboration

Maxim Kulikovskiy 1 collaboration

Yevhen Maltsev 1 collaboration

Martin Pfannkuchen 1 collaboration

Jonas Zimmermann 1 collaboration

Chunlian Li 1 collaboration

Andrzej Witkowski 1 collaboration

Matt P Ashworth 1 collaboration

Ruth M Hollands 1 collaboration

Edward C Theriot 1 collaboration

Rafał M Olszyński 1 collaboration

Piotr K Zakrzewski 1 collaboration

Julia Sulkowska 1 collaboration

Łukasz Peszek 1 collaboration

Joanna Żelazna-Wieczorek 1 collaboration

Csilla Stenger-Kovács 1 collaboration

Judit Padisák 1 collaboration

Hannah Weigand 1 collaboration

Arne J Beermann 1 collaboration

Fedor Čiampor 1 collaboration

Filipe O Costa 1 collaboration

Zoltán Csabai 1 collaboration

Sofia Duarte 1 collaboration

Matthias F Geiger 1 collaboration

Michał Grabowski 1 collaboration

Björn Rulik 1 collaboration

Malin Strand 1 collaboration

Nikolaus Szucsich 1 collaboration

Alexander M Weigand 1 collaboration

Endre Willassen 1 collaboration

Sofia A Wyler 1 collaboration

Angel Borja 1 collaboration

Zuzana Čiamporová-Zaťovičová 1 collaboration

Sónia Ferreira 1 collaboration

Klaas-Douwe B Dijkstra 1 collaboration

Ursula Eisendle 1 collaboration

Jörg Freyhof 1 collaboration

Piotr Gadawski 1 collaboration

Wolfram Graf 1 collaboration

Arne Haegerbaeumer 1 collaboration

Berry B van der Hoorn 1 collaboration

Lujza Keresztes 1 collaboration

Emre Keskin 1 collaboration

Florian Leese 1 collaboration

Jan N Macher 1 collaboration

Tomasz Mamos 1 collaboration

Guy Paz 1 collaboration

Vladimir Pešić 1 collaboration

Daniela Maric Pfannkuchen 1 collaboration

Martin Andreas Pfannkuchen 1 collaboration

Benjamin W Price 1 collaboration

Buki Rinkevich 1 collaboration

Marcos A L Teixeira 1 collaboration

Torbjørn Ekrem 1 collaboration

Panayiota Pissaridou 1 collaboration

Andreas Christou 1 collaboration

Athina Papatheodoulou 1 collaboration

Katerina Drakou 1 collaboration

Iakovos Tziortzis 1 collaboration

Gerald Dörflinger 1 collaboration

Agnes Bouchez 1 collaboration

Marlen I Vasquez 1 collaboration

Nico Salmaso 1 collaboration

Tina Elersek 1 collaboration

Adriano Boscaini 1 collaboration

Claudio Donati 1 collaboration

Marco Moretto 1 collaboration

Massimo Pindo 1 collaboration

Giulia Riccioni 1 collaboration

Erika Stefani 1 collaboration

Camilla Capelli 1 collaboration

Fabio Lepori 1 collaboration

Ute Mischke 1 collaboration

Aleksandra Krivograd Klemenčič 1 collaboration

Katarina Novak 1 collaboration

Claudia Greco 1 collaboration

Giorgio Franzini 1 collaboration

Giampaolo Fusato 1 collaboration

Federica Giacomazzi 1 collaboration

Alessia Lea 1 collaboration

Silvia Menegon 1 collaboration

Chiara Zampieri 1 collaboration

Arianna Macor 1 collaboration

Damiano Virgilio 1 collaboration

Elisa Zanut 1 collaboration

Raffaella Zorza 1 collaboration

Fabio Buzzi 1 collaboration

Maria João Feio 1 collaboration

Sónia R Q Serra 1 collaboration

Andreia Mortágua 1 collaboration

Salomé F P Almeida 1 collaboration

Gábor Borics 1 collaboration

Maria Helena Novais 1 collaboration

Maria Manuela Morais 1 collaboration

István Bácsi 1 collaboration

Philippe Usseglio-Polatera 1 collaboration

Viktória B-Béres 1 collaboration

Lory-Anne Baker 1 collaboration

Aude Beauger 1 collaboration

Sofia Kolovi 1 collaboration

Olivier Voldoire 1 collaboration

Elisabeth Allain 1 collaboration

Vincent Breton 1 collaboration

Patrick Chardon 1 collaboration

Didier Miallier 1 collaboration

Céline Bailly 1 collaboration

Gilles Montavon 1 collaboration

Cécile Chardon 1 collaboration

Luc Ector 1 collaboration

Carlos E Wetzel 1 collaboration

David G Biron 1 collaboration

Eveline Pinseel 1 collaboration

Levan Mumladze 1 collaboration

Nathalie Mary 1 collaboration

Olivier Monnier 1 collaboration

Fréderic Rimet 1 collaboration

Laure Apothéloz-Perret-Gentil 1 collaboration

Tristan Cordier 1 collaboration

Arielle Cordonier 1 collaboration

Jan Pawlowski 1 collaboration

Jérôme Labanowski 1 collaboration

Paul Illmer 1 collaboration

Abolfazl Irani Rahaghi 1 collaboration

Daniel Odermatt 1 collaboration

Orlane Anneville 1 collaboration

Oscar Sepúlveda Steiner 1 collaboration

Rafael Sebastian Reiss 1 collaboration

Marina Amadori 1 collaboration

Marco Toffolon 1 collaboration

Stéphan Jacquet 1 collaboration

Tristan Harmel 1 collaboration

Mortimer Werther 1 collaboration

Frédéric Soulignac 1 collaboration

Etienne Dambrine 1 collaboration

Didier Jézéquel 1 collaboration

Christine Hatté 1 collaboration

Viet Tran-Khac 1 collaboration

Serena Rasconi 1 collaboration

Damien Bouffard 1 collaboration