Endang M Septiningsih

Affiliations

Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, 77483, USA.

ORCID: http://orcid.org/0000-0002-9481-304X

Publications (35)

OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.).

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Avec: Backki Kim , Rihua Piao , Gileung Lee , Eunbyeol Koh , Yunjoo Lee , Sunmin Woo , Reflinur , Wenzhu Jiang , Michael J Thomson , Hee-Jong Koh

Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in

International journal of molecular sciences

Avec: Stephanie Schaarschmidt , Axel Fischer , Lovely Mae F Lawas , Rejbana Alam , Julia Bailey-Serres , S V Krishna Jagadish , Bruno Huettel , Dirk K Hincha , Ellen Zuther

Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis.

Rice (New York, N.Y.)

Avec: Sharmistha Ghosal , Carlos Casal , Fergie Ann Quilloy , Merlyn S Mendioro , Shalabh Dixit

An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.

PloS one

Avec: Karina Y Morales , Namrata Singh , Francisco Agosto Perez , John Carlos Ignacio , Ranjita Thapa , Juan D Arbelaez , Rodante E Tabien , Adam Famoso , Diane R Wang , Yuxin Shi , Tobias Kretzschmar , Susan R McCouch , Michael J Thomson

Transcriptome profiling of two rice varieties reveals their molecular responses under high night-time temperature.

PloS one

Avec: Wardah K Mustahsan , Yuya Liang , Abdul R Mohammed , Charles D Johnson , Lee Tarpley , Michael J Thomson

Increasing flooding tolerance in rice: combining tolerance of submergence and of stagnant flooding.

Annals of botany

Avec: Yoichiro Kato , Bertrand C Y Collard , Abdelbagi M Ismail

Responses of AG1 and AG2 QTL introgression lines and seed pre-treatment on growth and physiological processes during anaerobic germination of rice under flooding.

Scientific reports

Avec: Satyen Mondal , M Iqbal R Khan , Frederickson Entila , Shalabh Dixit , Pompe C Sta Cruz , M Panna Ali , Barry Pittendrigh , Abdelbagi M Ismail

Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice.

International journal of molecular sciences

Avec: Hedia Tnani , Dmytro Chebotarov , Ranjita Thapa , John Carlos I Ignacio , Walter K Israel , Fergie A Quilloy , Shalabh Dixit , Tobias Kretzschmar

Genetic factors underlying anaerobic germination in rice: Genome-wide association study and transcriptomic analysis.

The plant genome

Avec: Ranjita Thapa , Rodante E Tabien , Michael J Thomson ,

Identifying the Genetic Basis of Mineral Elements in Rice Grain Using Genome-Wide Association Mapping.

Genes

Avec: A S M Faridul Islam , Wardah Mustahsan , Rodante Tabien , Joseph M Awika , Michael J Thomson

Genetic Mapping by Sequencing More Precisely Detects Loci Responsible for Anaerobic Germination Tolerance in Rice.

Plants (Basel, Switzerland)

Avec: John Carlos I Ignacio , Maricris Zaidem , Carlos Casal , Shalabh Dixit , Tobias Kretzschmar , Jaime M Samaniego , Merlyn S Mendioro , Detlef Weigel ,

Optimizing

International journal of molecular sciences

Avec: Marco Molina-Risco , Oneida Ibarra , Mayra Faion-Molina , Backki Kim , Michael J Thomson

Improved Transformation and Regeneration of

International journal of molecular sciences

Avec: Yuya Liang , Sudip Biswas , Backki Kim , Julia Bailey-Serres ,

Functional Allele Validation by Gene Editing to Leverage the Wealth of Genetic Resources for Crop Improvement.

International journal of molecular sciences

Avec: Michael J Thomson , Sudip Biswas , Nikolaos Tsakirpaloglou ,

Increasing the level of resistant starch in 'Presidio' rice through multiplex CRISPR-Cas9 gene editing of starch branching enzyme genes.

The plant genome

Avec: Sudip Biswas , Oneida Ibarra , Mariam Shaphek , Marco Molina-Risco , Mayra Faion-Molina , Marcela Bellinatti-Della Gracia , Michael J Thomson ,

Diagnosing arsenic-mediated biochemical responses in rice cultivars using Raman spectroscopy.

Frontiers in plant science

Avec: Isaac D Juárez , Tianyi Dou , Sudip Biswas , Dmitry Kurouski

QTL mapping for tolerance to anaerobic germination in rice from IR64 and the

Breeding science

Avec: Miriam D Baltazar , John Carlos I Ignacio , Michael J Thomson , Abdelbagi M Ismail , Merlyn S Mendioro ,

Genome-Wide Association Mapping to Identify Genetic Loci for Cold Tolerance and Cold Recovery During Germination in Rice.

Frontiers in genetics

Avec: Ranjita Thapa , Rodante E Tabien , Michael J Thomson ,

Transcriptome profiling of two rice genotypes under mild field drought stress during grain-filling stage.

AoB PLANTS

Avec: Yuya Liang , Rodante E Tabien , Lee Tarpley , Abdul R Mohammed ,

Raman Spectroscopy Enables Non-invasive and Confirmatory Diagnostics of Aluminum and Iron Toxicities in Rice.

Frontiers in plant science

Avec: Samantha Higgins , Sudip Biswas , Nicolas K Goff , Dmitry Kurouski

Carbon Nanotube-Mediated Plasmid DNA Delivery in Rice Leaves and Seeds.

International journal of molecular sciences

Avec: Tia Dunbar , Nikolaos Tsakirpaloglou , Michael J Thomson

Mapping QTLs for Reproductive Stage Salinity Tolerance in Rice Using a Cross between Hasawi and BRRI dhan28.

International journal of molecular sciences

Avec: Sejuti Mondal , Rakesh K Singh , Michael J Thomson

Optimization of Prime Editing in Rice, Peanut, Chickpea, and Cowpea Protoplasts by Restoration of GFP Activity.

International journal of molecular sciences

Avec: Sudip Biswas , Aya Bridgeland , Samra Irum , Michael J Thomson ,

Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance.

Scientific reports

Avec: Anuradha Singh , Yashi Singh , Ajay K Mahato , Pawan K Jayaswal , Sangeeta Singh , Renu Singh , Neera Yadav , A K Singh , P K Singh , Rakesh Singh , Rajesh Kumar , H S Balyan , Nagendra K Singh , Vandna Rai

Flood resilience loci

Plant direct

Avec: Rejbana Alam , Maureen Hummel , Elaine Yeung , Anna M Locke , John Carlos I Ignacio , Miriam D Baltazar , Zhenyu Jia , Abdelbagi M Ismail , Julia Bailey-Serres

Trait-based mapping to identify the genetic factors underlying anaerobic germination of rice: Phenotyping, GXE, and QTL mapping.

BMC genetics

Avec: Sharmistha Ghosal , Fergie Ann Quilloy , Carlos Casal , Merlyn S Mendioro , Shalabh Dixit

Optimization of Protoplast Isolation and Transformation for a Pilot Study of Genome Editing in Peanut by Targeting the Allergen Gene

International journal of molecular sciences

Avec: Sudip Biswas , Nancy J Wahl , Michael J Thomson , John M Cason , Bill F McCutchen ,

Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1.

Plants (Basel, Switzerland)

Avec: Yuya Liang , Shichen Wang , Chersty L Harper , Nithya K Subramanian , Rodante E Tabien , Charles D Johnson , Julia Bailey-Serres ,

Raman Spectroscopy Enables Non-invasive and Confirmatory Diagnostics of Salinity Stresses, Nitrogen, Phosphorus, and Potassium Deficiencies in Rice.

Frontiers in plant science

Avec: Lee Sanchez , Alexei Ermolenkov , Sudip Biswas , Dmitry Kurouski

Non-Invasive Identification of Nutrient Components in Grain.

Molecules (Basel, Switzerland)

Avec: Charles Farber , A S M Faridul Islam , Michael J Thomson , Dmitry Kurouski

Phenotypic variation and genome-wide association studies of main culm panicle node number, maximum node production rate, and degree-days to heading in rice.

BMC genomics

Avec: Darlene L Sanchez , Stanley Omar Pb Samonte , Jasper Benedict B Alpuerto , Peyton A Croaker , Karina Y Morales , Yubin Yang , Lloyd T Wilson , Rodante E Tabien , Zongbu Yan , Michael J Thomson ,

Guidelines for Performing CRISPR/Cas9 Genome Editing for Gene Validation and Trait Improvement in Crops.

Plants (Basel, Switzerland)

Avec: Nikolaos Tsakirpaloglou , Michael J Thomson

Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress.

BMC genomics

Avec: Ranjita Thapa , Rodante E Tabien , Charles D Johnson ,

Optimization of gene editing in cowpea through protoplast transformation and agroinfiltration by targeting the phytoene desaturase gene.

PloS one

Avec: Aya Bridgeland , Sudip Biswas , Nikolaos Tsakirpaloglou , Michael J Thomson ,

Rice breeding for low input agriculture.

Frontiers in plant science

Avec: Subroto Das Jyoti , Gurjeet Singh , Anjan Kumar Pradhan , Lee Tarpley , Shyamal K Talukder

Réseau de co-auteurs

Michael J Thomson 18 collaborations

Sudip Biswas 9 collaborations

Rodante E Tabien 7 collaborations

Shalabh Dixit 5 collaborations

Ranjita Thapa 5 collaborations

Julia Bailey-Serres 4 collaborations

Merlyn S Mendioro 4 collaborations

Yuya Liang 4 collaborations

Abdelbagi M Ismail 4 collaborations

John Carlos I Ignacio 4 collaborations

Nikolaos Tsakirpaloglou 4 collaborations

Dmitry Kurouski 4 collaborations

Backki Kim 3 collaborations

Carlos Casal 3 collaborations

Tobias Kretzschmar 3 collaborations

Charles D Johnson 3 collaborations

Lee Tarpley 3 collaborations

Rejbana Alam 2 collaborations

Sharmistha Ghosal 2 collaborations

Fergie Ann Quilloy 2 collaborations

Karina Y Morales 2 collaborations

Abdul R Mohammed 2 collaborations

A S M Faridul Islam 2 collaborations

Marco Molina-Risco 2 collaborations

Oneida Ibarra 2 collaborations

Mayra Faion-Molina 2 collaborations

Miriam D Baltazar 2 collaborations

Aya Bridgeland 2 collaborations

Rihua Piao 1 collaboration

Gileung Lee 1 collaboration

Eunbyeol Koh 1 collaboration

Yunjoo Lee 1 collaboration

Sunmin Woo 1 collaboration

None Reflinur 1 collaboration

Wenzhu Jiang 1 collaboration

Hee-Jong Koh 1 collaboration

Stephanie Schaarschmidt 1 collaboration

Axel Fischer 1 collaboration

Lovely Mae F Lawas 1 collaboration

S V Krishna Jagadish 1 collaboration

Bruno Huettel 1 collaboration

Dirk K Hincha 1 collaboration

Ellen Zuther 1 collaboration

Namrata Singh 1 collaboration

Francisco Agosto Perez 1 collaboration

John Carlos Ignacio 1 collaboration

Juan D Arbelaez 1 collaboration

Adam Famoso 1 collaboration

Diane R Wang 1 collaboration

Yuxin Shi 1 collaboration

Susan R McCouch 1 collaboration

Wardah K Mustahsan 1 collaboration

Yoichiro Kato 1 collaboration

Bertrand C Y Collard 1 collaboration

Satyen Mondal 1 collaboration

M Iqbal R Khan 1 collaboration

Frederickson Entila 1 collaboration

Pompe C Sta Cruz 1 collaboration

M Panna Ali 1 collaboration

Barry Pittendrigh 1 collaboration

Hedia Tnani 1 collaboration

Dmytro Chebotarov 1 collaboration

Walter K Israel 1 collaboration

Fergie A Quilloy 1 collaboration

Wardah Mustahsan 1 collaboration

Rodante Tabien 1 collaboration

Joseph M Awika 1 collaboration

Maricris Zaidem 1 collaboration

Jaime M Samaniego 1 collaboration

Detlef Weigel 1 collaboration

Mariam Shaphek 1 collaboration

Marcela Bellinatti-Della Gracia 1 collaboration

Isaac D Juárez 1 collaboration

Tianyi Dou 1 collaboration

Samantha Higgins 1 collaboration

Nicolas K Goff 1 collaboration

Tia Dunbar 1 collaboration

Sejuti Mondal 1 collaboration

Rakesh K Singh 1 collaboration

Samra Irum 1 collaboration

Anuradha Singh 1 collaboration

Yashi Singh 1 collaboration

Ajay K Mahato 1 collaboration

Pawan K Jayaswal 1 collaboration

Sangeeta Singh 1 collaboration

Renu Singh 1 collaboration

Neera Yadav 1 collaboration

A K Singh 1 collaboration

P K Singh 1 collaboration

Rakesh Singh 1 collaboration

Rajesh Kumar 1 collaboration

H S Balyan 1 collaboration

Nagendra K Singh 1 collaboration

Vandna Rai 1 collaboration

Maureen Hummel 1 collaboration

Elaine Yeung 1 collaboration

Anna M Locke 1 collaboration

Zhenyu Jia 1 collaboration

Nancy J Wahl 1 collaboration

John M Cason 1 collaboration

Bill F McCutchen 1 collaboration

Shichen Wang 1 collaboration

Chersty L Harper 1 collaboration

Nithya K Subramanian 1 collaboration

Lee Sanchez 1 collaboration

Alexei Ermolenkov 1 collaboration

Charles Farber 1 collaboration

Darlene L Sanchez 1 collaboration

Stanley Omar Pb Samonte 1 collaboration

Jasper Benedict B Alpuerto 1 collaboration

Peyton A Croaker 1 collaboration

Yubin Yang 1 collaboration

Lloyd T Wilson 1 collaboration

Zongbu Yan 1 collaboration

Subroto Das Jyoti 1 collaboration

Gurjeet Singh 1 collaboration

Anjan Kumar Pradhan 1 collaboration

Shyamal K Talukder 1 collaboration