Charles Tapley Hoyt

Affiliations

Enveda Therapeutics, 53225 Bonn, Germany.

ORCID: 0000-0003-4423-4370

Publications (9)

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).

Bioinformatics (Oxford, England)

Avec: Vasundra Touré , Steven Vercruysse , Marcio Luis Acencio , Ruth C Lovering , Sandra Orchard , Glyn Bradley , Cristina Casals-Casas , Claudine Chaouiya , Noemi Del-Toro , Åsmund Flobak , Pascale Gaudet , Henning Hermjakob , Luana Licata , Astrid Lægreid , Christopher J Mungall , Anne Niknejad , Simona Panni , Livia Perfetto , Pablo Porras , Dexter Pratt , Julio Saez-Rodriguez , Denis Thieffry , Paul D Thomas , Dénes Türei , Martin Kuiper

PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures.

BMC bioinformatics

Avec: Mohammad Asif Emon , Daniel Domingo-Fernández , Martin Hofmann-Apitius

A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer's Disease.

Journal of Alzheimer's disease : JAD

Avec: Sepehr Golriz Khatami , Daniel Domingo-Fernández , Sarah Mubeen , Christine Robinson , Reagon Karki , Anandhi Iyappan , Alpha Tom Kodamullil , Martin Hofmann-Apitius

CLEP: a hybrid data- and knowledge-driven framework for generating patient representations.

Bioinformatics (Oxford, England)

Avec: Vinay Srinivas Bharadhwaj , Mehdi Ali , Colin Birkenbihl , Sarah Mubeen , Jens Lehmann , Martin Hofmann-Apitius , Daniel Domingo-Fernández

STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs.

Bioinformatics (Oxford, England)

Avec: Helena Balabin , Colin Birkenbihl , Benjamin M Gyori , John Bachman , Alpha Tom Kodamullil , Paul G Plöger , Martin Hofmann-Apitius , Daniel Domingo-Fernández

A Simple Standard for Sharing Ontological Mappings (SSSOM).

Database : the journal of biological databases and curation

Avec: Nicolas Matentzoglu , James P Balhoff , Susan M Bello , Chris Bizon , Matthew Brush , Tiffany J Callahan , Christopher G Chute , William D Duncan , Chris T Evelo , Davera Gabriel , John Graybeal , Alasdair Gray , Benjamin M Gyori , Melissa Haendel , Henriette Harmse , Nomi L Harris , Ian Harrow , Harshad B Hegde , Amelia L Hoyt , Charles T Hoyt , Dazhi Jiao , Ernesto Jiménez-Ruiz , Simon Jupp , Hyeongsik Kim , Sebastian Koehler , Thomas Liener , Qinqin Long , James Malone , James A McLaughlin , Julie A McMurry , Sierra Moxon , Monica C Munoz-Torres , David Osumi-Sutherland , James A Overton , Bjoern Peters , Tim Putman , Núria Queralt-Rosinach , Kent Shefchek , Harold Solbrig , Anne Thessen , Tania Tudorache , Nicole Vasilevsky , Alex H Wagner , Christopher J Mungall

Unifying the identification of biomedical entities with the Bioregistry.

Scientific data

Avec: Meghan Balk , Tiffany J Callahan , Daniel Domingo-Fernández , Melissa A Haendel , Harshad B Hegde , Daniel S Himmelstein , Klas Karis , John Kunze , Tiago Lubiana , Nicolas Matentzoglu , Julie McMurry , Sierra Moxon , Christopher J Mungall , Adriano Rutz , Deepak R Unni , Egon Willighagen , Donald Winston , Benjamin M Gyori

A review of biomedical datasets relating to drug discovery: a knowledge graph perspective.

Briefings in bioinformatics

Avec: Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Andreas Bender , William L Hamilton

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.

Database : the journal of biological databases and curation

Avec: Nicolas Matentzoglu , Damien Goutte-Gattat , Shawn Zheng Kai Tan , James P Balhoff , Seth Carbon , Anita R Caron , William D Duncan , Joe E Flack , Melissa Haendel , Nomi L Harris , William R Hogan , Rebecca C Jackson , HyeongSik Kim , Huseyin Kir , Martin Larralde , Julie A McMurry , James A Overton , Bjoern Peters , Clare Pilgrim , Ray Stefancsik , Sofia Mc Robb , Sabrina Toro , Nicole A Vasilevsky , Ramona Walls , Christopher J Mungall , David Osumi-Sutherland

Réseau de co-auteurs

Daniel Domingo-Fernández 5 collaborations

Christopher J Mungall 4 collaborations

Martin Hofmann-Apitius 4 collaborations

Benjamin M Gyori 3 collaborations

Nicolas Matentzoglu 3 collaborations

Sarah Mubeen 2 collaborations

Alpha Tom Kodamullil 2 collaborations

Colin Birkenbihl 2 collaborations

James P Balhoff 2 collaborations

Tiffany J Callahan 2 collaborations

William D Duncan 2 collaborations

Melissa Haendel 2 collaborations

Nomi L Harris 2 collaborations

Harshad B Hegde 2 collaborations

Julie A McMurry 2 collaborations

Sierra Moxon 2 collaborations

David Osumi-Sutherland 2 collaborations

James A Overton 2 collaborations

Bjoern Peters 2 collaborations

Vasundra Touré 1 collaboration

Steven Vercruysse 1 collaboration

Marcio Luis Acencio 1 collaboration

Ruth C Lovering 1 collaboration

Sandra Orchard 1 collaboration

Glyn Bradley 1 collaboration

Cristina Casals-Casas 1 collaboration

Claudine Chaouiya 1 collaboration

Noemi Del-Toro 1 collaboration

Åsmund Flobak 1 collaboration

Pascale Gaudet 1 collaboration

Henning Hermjakob 1 collaboration

Luana Licata 1 collaboration

Astrid Lægreid 1 collaboration

Anne Niknejad 1 collaboration

Simona Panni 1 collaboration

Livia Perfetto 1 collaboration

Pablo Porras 1 collaboration

Dexter Pratt 1 collaboration

Julio Saez-Rodriguez 1 collaboration

Denis Thieffry 1 collaboration

Paul D Thomas 1 collaboration

Dénes Türei 1 collaboration

Martin Kuiper 1 collaboration

Mohammad Asif Emon 1 collaboration

Sepehr Golriz Khatami 1 collaboration

Christine Robinson 1 collaboration

Reagon Karki 1 collaboration

Anandhi Iyappan 1 collaboration

Vinay Srinivas Bharadhwaj 1 collaboration

Mehdi Ali 1 collaboration

Jens Lehmann 1 collaboration

Helena Balabin 1 collaboration

John Bachman 1 collaboration

Paul G Plöger 1 collaboration

Susan M Bello 1 collaboration

Chris Bizon 1 collaboration

Matthew Brush 1 collaboration

Christopher G Chute 1 collaboration

Chris T Evelo 1 collaboration

Davera Gabriel 1 collaboration

John Graybeal 1 collaboration

Alasdair Gray 1 collaboration

Henriette Harmse 1 collaboration

Ian Harrow 1 collaboration

Amelia L Hoyt 1 collaboration

Charles T Hoyt 1 collaboration

Dazhi Jiao 1 collaboration

Ernesto Jiménez-Ruiz 1 collaboration

Simon Jupp 1 collaboration

Hyeongsik Kim 1 collaboration

Sebastian Koehler 1 collaboration

Thomas Liener 1 collaboration

Qinqin Long 1 collaboration

James Malone 1 collaboration

James A McLaughlin 1 collaboration

Monica C Munoz-Torres 1 collaboration

Tim Putman 1 collaboration

Núria Queralt-Rosinach 1 collaboration

Kent Shefchek 1 collaboration

Harold Solbrig 1 collaboration

Anne Thessen 1 collaboration

Tania Tudorache 1 collaboration

Nicole Vasilevsky 1 collaboration

Alex H Wagner 1 collaboration

Meghan Balk 1 collaboration

Melissa A Haendel 1 collaboration

Daniel S Himmelstein 1 collaboration

Klas Karis 1 collaboration

John Kunze 1 collaboration

Tiago Lubiana 1 collaboration

Julie McMurry 1 collaboration

Adriano Rutz 1 collaboration

Deepak R Unni 1 collaboration

Egon Willighagen 1 collaboration

Donald Winston 1 collaboration

Stephen Bonner 1 collaboration

Ian P Barrett 1 collaboration

Cheng Ye 1 collaboration

Rowan Swiers 1 collaboration

Ola Engkvist 1 collaboration

Andreas Bender 1 collaboration

William L Hamilton 1 collaboration

Damien Goutte-Gattat 1 collaboration

Shawn Zheng Kai Tan 1 collaboration

Seth Carbon 1 collaboration

Anita R Caron 1 collaboration

Joe E Flack 1 collaboration

William R Hogan 1 collaboration

Rebecca C Jackson 1 collaboration

HyeongSik Kim 1 collaboration

Huseyin Kir 1 collaboration

Martin Larralde 1 collaboration

Clare Pilgrim 1 collaboration

Ray Stefancsik 1 collaboration

Sofia Mc Robb 1 collaboration

Sabrina Toro 1 collaboration

Nicole A Vasilevsky 1 collaboration

Ramona Walls 1 collaboration