Balachandran Manavalan

Affiliations

Ajou University, Republic of Korea.

ORCID: 0000-0003-0697-9419

Publications (50)

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework.

Briefings in bioinformatics

Avec: Md Mehedi Hasan , Shaherin Basith , Mst Shamima Khatun , Gwang Lee , Hiroyuki Kurata

A Molecular Dynamics Approach to Explore the Intramolecular Signal Transduction of PPAR-α.

International journal of molecular sciences

Avec: Shaherin Basith , Tae Hwan Shin , Gwang Lee

Iterative feature representations improve N4-methylcytosine site prediction.

Bioinformatics (Oxford, England)

Avec: Leyi Wei , Ran Su , Shasha Luan , Zhijun Liao , Quan Zou , Xiaolong Shi

Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework.

Briefings in bioinformatics

Avec: Leyi Wei , Wenjia He , Adeel Malik , Ran Su , Lizhen Cui ,

Silica-coated magnetic-nanoparticle-induced cytotoxicity is reduced in microglia by glutathione and citrate identified using integrated omics.

Particle and fibre toxicology

Avec: Tae Hwan Shin , Da Yeon Lee , Shaherin Basith , Chan Seo , Man Jeong Paik , Sang-Wook Kim , Haewoon Seo , Ju Yeon Lee , Jin Young Kim , A Young Kim , Jee Min Chung , Eun Joo Baik , Seong Ho Kang , Dong-Kug Choi , Yup Kang , M Maral Mouradian , Gwang Lee

Accelerating bioactive peptide discovery via mutual information-based meta-learning.

Briefings in bioinformatics

Avec: Wenjia He , Yi Jiang , Junru Jin , Zhongshen Li , Jiaojiao Zhao , Ran Su , Xin Gao , Leyi Wei

NEPTUNE: A novel computational approach for accurate and large-scale identification of tumor homing peptides.

Computers in biology and medicine

Avec: Phasit Charoenkwan , Nalini Schaduangrat , Pietro Lio' , Mohammad Ali Moni , Watshara Shoombuatong

PSRQSP: An effective approach for the interpretable prediction of quorum sensing peptide using propensity score representation learning.

Computers in biology and medicine

Avec: Phasit Charoenkwan , Pramote Chumnanpuen , Nalini Schaduangrat , Changmin Oh , Watshara Shoombuatong

Computational prediction of protein folding rate using structural parameters and network centrality measures.

Computers in biology and medicine

Avec: Saraswathy Nithiyanandam , Vinoth Kumar Sangaraju , Gwang Lee

Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach.

Computers in biology and medicine

Avec: Md Harun-Or-Roshid , Kazuhiro Maeda , Le Thi Phan , Hiroyuki Kurata

MLm5C: A high-precision human RNA 5-methylcytosine sites predictor based on a combination of hybrid machine learning models.

Methods (San Diego, Calif.)

Avec: Hiroyuki Kurata , Md Harun-Or-Roshid , Md Mehedi Hasan , Sho Tsukiyama , Kazuhiro Maeda ,

Computational prediction of species-specific yeast DNA replication origin via iterative feature representation.

Briefings in bioinformatics

Avec: Shaherin Basith , Tae Hwan Shin , Gwang Lee

SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome.

Molecular therapy. Nucleic acids

Avec: Shaherin Basith , Tae Hwan Shin , Gwang Lee

Machine intelligence in peptide therapeutics: A next-generation tool for rapid disease screening.

Medicinal research reviews

Avec: Shaherin Basith , Tae Hwan Shin , Gwang Lee

Integrative machine learning framework for the identification of cell-specific enhancers from the human genome.

Briefings in bioinformatics

Avec: Shaherin Basith , Md Mehedi Hasan , Gwang Lee , Leyi Wei ,

Comparative analysis of machine learning-based approaches for identifying therapeutic peptides targeting SARS-CoV-2.

Briefings in bioinformatics

Avec: Shaherin Basith , Gwang Lee

BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides.

Bioinformatics (Oxford, England)

Avec: Phasit Charoenkwan , Chanin Nantasenamat , Md Mehedi Hasan , Watshara Shoombuatong

UMPred-FRL: A New Approach for Accurate Prediction of Umami Peptides Using Feature Representation Learning.

International journal of molecular sciences

Avec: Phasit Charoenkwan , Chanin Nantasenamat , Md Mehedi Hasan , Mohammad Ali Moni , Watshara Shoombuatong

Protection of c-Fos from autophagic degradation by PRMT1-mediated methylation fosters gastric tumorigenesis.

International journal of biological sciences

Avec: Eunji Kim , Laily Rahmawati , Nur Aziz , Han Gyung Kim , Ji Hye Kim , Kyung-Hee Kim , Byong Chul Yoo , Narayana Parameswaran , Jong-Sun Kang , Hoon Hur , Jongsung Lee , Jae Youl Cho

APLpred: A machine learning-based tool for accurate prediction and characterization of asparagine peptide lyases using sequence-derived optimal features.

Methods (San Diego, Calif.)

Avec: Adeel Malik , Majid Rasool Kamli , Jamal S M Sabir , Irfan Ahmad Rather , Le Thi Phan , Chang-Bae Kim ,

HOTGpred: Enhancing human O-linked threonine glycosylation prediction using integrated pretrained protein language model-based features and multi-stage feature selection approach.

Computers in biology and medicine

Avec: Nhat Truong Pham , Ying Zhang , Rajan Rakkiyappan ,

Computational prediction and interpretation of druggable proteins using a stacked ensemble-learning framework.

iScience

Avec: Phasit Charoenkwan , Nalini Schaduangrat , Pietro Lio' , Mohammad Ali Moni , Watshara Shoombuatong ,

PRR-HyPred: A two-layer hybrid framework to predict pattern recognition receptors and their families by employing sequence encoded optimal features.

International journal of biological macromolecules

Avec: Ahmad Firoz , Adeel Malik , Hani Mohammed Ali , Yusuf Akhter , Chang-Bae Kim

DrugormerDTI: Drug Graphormer for drug-target interaction prediction.

Computers in biology and medicine

Avec: Jiayue Hu , Wang Yu , Chao Pang , Junru Jin , Nhat Truong Pham , Leyi Wei

Identification of SH2 domain-containing proteins and motifs prediction by a deep learning method.

Computers in biology and medicine

Avec: Duanzhi Wu , Xin Fang , Kai Luan , Qijin Xu , Shiqi Lin , Shiying Sun , Jiaying Yang , Bingying Dong , Zhijun Liao

Unveiling local and global conformational changes and allosteric communications in SOD1 systems using molecular dynamics simulation and network analyses.

Computers in biology and medicine

Avec: Shaherin Basith , Gwang Lee

mHPpred: Accurate identification of peptide hormones using multi-view feature learning.

Computers in biology and medicine

Avec: Shaherin Basith , Vinoth Kumar Sangaraju , Gwang Lee

i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation.

Plant molecular biology

Avec: Md Mehedi Hasan , Watshara Shoombuatong , Mst Shamima Khatun , Hiroyuki Kurata

Prediction of S-nitrosylation sites by integrating support vector machines and random forest.

Molecular omics

Avec: Md Mehedi Hasan , Mst Shamima Khatun , Hiroyuki Kurata

PFDB: A standardized protein folding database with temperature correction.

Scientific reports

Avec: Kunihiro Kuwajima , Jooyoung Lee

mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides.

International journal of molecular sciences

Avec: Vinothini Boopathi , Sathiyamoorthy Subramaniyam , Adeel Malik , Gwang Lee , Deok-Chun Yang

Mapping the Intramolecular Communications among Different Glutamate Dehydrogenase States Using Molecular Dynamics.

Biomolecules

Avec: Shaherin Basith , Tae Hwan Shin , Gwang Lee

NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning.

Briefings in bioinformatics

Avec: Md Mehedi Hasan , Md Ashad Alam , Watshara Shoombuatong , Hong-Wen Deng , Hiroyuki Kurata

StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides.

Briefings in bioinformatics

Avec: Phasit Charoenkwan , Wararat Chiangjong , Chanin Nantasenamat , Md Mehedi Hasan , Watshara Shoombuatong

Recent Trends on the Development of Machine Learning Approaches for the Prediction of Lysine Acetylation Sites.

Current medicinal chemistry

Avec: Shaherin Basith , Hye Jin Chang , Saraswathy Nithiyanandam , Tae Hwan Shin , Gwang Lee

MLCPP 2.0: An Updated Cell-penetrating Peptides and Their Uptake Efficiency Predictor.

Journal of molecular biology

Avec: Mahesh Chandra Patra

Deepm5C: A deep-learning-based hybrid framework for identifying human RNA N5-methylcytosine sites using a stacking strategy.

Molecular therapy : the journal of the American Society of Gene Therapy

Avec: Md Mehedi Hasan , Sho Tsukiyama , Jae Youl Cho , Hiroyuki Kurata , Md Ashad Alam , Xiaowen Liu , Hong-Wen Deng

The Impact of Fine Particulate Matter 2.5 on the Cardiovascular System: A Review of the Invisible Killer.

Nanomaterials (Basel, Switzerland)

Avec: Shaherin Basith , Tae Hwan Shin , Chan Bae Park , Wang-Soo Lee , Jaetaek Kim , Gwang Lee

TACOS: a novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization.

Briefings in bioinformatics

Avec: Young-Jun Jeon , Md Mehedi Hasan , Hyun Woo Park , Ki Wook Lee ,

A comprehensive revisit of the machine-learning tools developed for the identification of enhancers in the human genome.

Proteomics

Avec: Le Thi Phan , Changmin Oh , Tao He ,

GPApred: The first computational predictor for identifying proteins with LPXTG-like motif using sequence-based optimal features.

International journal of biological macromolecules

Avec: Adeel Malik , Watshara Shoombuatong , Chang-Bae Kim ,

SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning.

Briefings in bioinformatics

Avec: Xin Zhang , Lesong Wei , Xiucai Ye , Kai Zhang , Saisai Teng , Zhongshen Li , Junru Jin , Min Jae Kim , Tetsuya Sakurai , Lizhen Cui , Leyi Wei

CODENET: A deep learning model for COVID-19 detection.

Computers in biology and medicine

Avec: Hong Ju , Yanyan Cui , Qiaosen Su , Liran Juan ,

mACPpred 2.0: Stacked Deep Learning for Anticancer Peptide Prediction with Integrated Spatial and Probabilistic Feature Representations.

Journal of molecular biology

Avec: Vinoth Kumar Sangaraju , Nhat Truong Pham , Leyi Wei , Xue Yu ,

Metabolome Changes in Cerebral Ischemia.

Cells

Avec: Tae Hwan Shin , Da Yeon Lee , Shaherin Basith , Man Jeong Paik , Igor Rybinnik , M Maral Mouradian , Jung Hwan Ahn , Gwang Lee

Extremely-randomized-tree-based Prediction of N

Current genomics

Avec: Rajiv G Govindaraj , Sathiyamoorthy Subramaniyam ,

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation.

Bioinformatics (Oxford, England)

Avec: Shaherin Basith , Tae Hwan Shin , Leyi Wei , Gwang Lee

Meta-4mCpred: A Sequence-Based Meta-Predictor for Accurate DNA 4mC Site Prediction Using Effective Feature Representation.

Molecular therapy. Nucleic acids

Avec: Shaherin Basith , Tae Hwan Shin , Leyi Wei , Gwang Lee

4mCpred-EL: An Ensemble Learning Framework for Identification of DNA

Cells

Avec: Shaherin Basith , Tae Hwan Shin , Da Yeon Lee , Leyi Wei , Gwang Lee

Silica-Coated Magnetic Nanoparticles Decrease Human Bone Marrow-Derived Mesenchymal Stem Cell Migratory Activity by Reducing Membrane Fluidity and Impairing Focal Adhesion.

Nanomaterials (Basel, Switzerland)

Avec: Tae Hwan Shin , Da Yeon Lee , Abdurazak Aman Ketebo , Seungah Lee , Shaherin Basith , Chanyoung Ahn , Seong Ho Kang , Sungsu Park , Gwang Lee

Réseau de co-auteurs

Gwang Lee 20 collaborations

Shaherin Basith 18 collaborations

Tae Hwan Shin 13 collaborations

Md Mehedi Hasan 11 collaborations

Leyi Wei 10 collaborations

Watshara Shoombuatong 9 collaborations

Hiroyuki Kurata 7 collaborations

Phasit Charoenkwan 6 collaborations

Adeel Malik 5 collaborations

Da Yeon Lee 4 collaborations

Mst Shamima Khatun 3 collaborations

Ran Su 3 collaborations

Junru Jin 3 collaborations

Nalini Schaduangrat 3 collaborations

Mohammad Ali Moni 3 collaborations

Vinoth Kumar Sangaraju 3 collaborations

Le Thi Phan 3 collaborations

Chanin Nantasenamat 3 collaborations

Chang-Bae Kim 3 collaborations

Nhat Truong Pham 3 collaborations

Zhijun Liao 2 collaborations

Wenjia He 2 collaborations

Lizhen Cui 2 collaborations

Man Jeong Paik 2 collaborations

Seong Ho Kang 2 collaborations

M Maral Mouradian 2 collaborations

Zhongshen Li 2 collaborations

Pietro Lio' 2 collaborations

Changmin Oh 2 collaborations

Saraswathy Nithiyanandam 2 collaborations

Md Harun-Or-Roshid 2 collaborations

Kazuhiro Maeda 2 collaborations

Sho Tsukiyama 2 collaborations

Jae Youl Cho 2 collaborations

Sathiyamoorthy Subramaniyam 2 collaborations

Md Ashad Alam 2 collaborations

Hong-Wen Deng 2 collaborations

Shasha Luan 1 collaboration

Quan Zou 1 collaboration

Xiaolong Shi 1 collaboration

Chan Seo 1 collaboration

Sang-Wook Kim 1 collaboration

Haewoon Seo 1 collaboration

Ju Yeon Lee 1 collaboration

Jin Young Kim 1 collaboration

A Young Kim 1 collaboration

Jee Min Chung 1 collaboration

Eun Joo Baik 1 collaboration

Dong-Kug Choi 1 collaboration

Yup Kang 1 collaboration

Yi Jiang 1 collaboration

Jiaojiao Zhao 1 collaboration

Xin Gao 1 collaboration

Pramote Chumnanpuen 1 collaboration

Eunji Kim 1 collaboration

Laily Rahmawati 1 collaboration

Nur Aziz 1 collaboration

Han Gyung Kim 1 collaboration

Ji Hye Kim 1 collaboration

Kyung-Hee Kim 1 collaboration

Byong Chul Yoo 1 collaboration

Narayana Parameswaran 1 collaboration

Jong-Sun Kang 1 collaboration

Hoon Hur 1 collaboration

Jongsung Lee 1 collaboration

Majid Rasool Kamli 1 collaboration

Jamal S M Sabir 1 collaboration

Irfan Ahmad Rather 1 collaboration

Ying Zhang 1 collaboration

Rajan Rakkiyappan 1 collaboration

Ahmad Firoz 1 collaboration

Hani Mohammed Ali 1 collaboration

Yusuf Akhter 1 collaboration

Jiayue Hu 1 collaboration

Wang Yu 1 collaboration

Chao Pang 1 collaboration

Duanzhi Wu 1 collaboration

Xin Fang 1 collaboration

Kai Luan 1 collaboration

Qijin Xu 1 collaboration

Shiqi Lin 1 collaboration

Shiying Sun 1 collaboration

Jiaying Yang 1 collaboration

Bingying Dong 1 collaboration

Kunihiro Kuwajima 1 collaboration

Jooyoung Lee 1 collaboration

Vinothini Boopathi 1 collaboration

Deok-Chun Yang 1 collaboration

Wararat Chiangjong 1 collaboration

Hye Jin Chang 1 collaboration

Mahesh Chandra Patra 1 collaboration

Xiaowen Liu 1 collaboration

Chan Bae Park 1 collaboration

Wang-Soo Lee 1 collaboration

Jaetaek Kim 1 collaboration

Young-Jun Jeon 1 collaboration

Hyun Woo Park 1 collaboration

Ki Wook Lee 1 collaboration

Tao He 1 collaboration

Xin Zhang 1 collaboration

Lesong Wei 1 collaboration

Xiucai Ye 1 collaboration

Kai Zhang 1 collaboration

Saisai Teng 1 collaboration

Min Jae Kim 1 collaboration

Tetsuya Sakurai 1 collaboration

Hong Ju 1 collaboration

Yanyan Cui 1 collaboration

Qiaosen Su 1 collaboration

Liran Juan 1 collaboration

Xue Yu 1 collaboration

Igor Rybinnik 1 collaboration

Jung Hwan Ahn 1 collaboration

Rajiv G Govindaraj 1 collaboration

Abdurazak Aman Ketebo 1 collaboration

Seungah Lee 1 collaboration

Chanyoung Ahn 1 collaboration

Sungsu Park 1 collaboration