Apurva Narechania

Affiliations

Institute for Comparative Genomics, American Museum of Natural History, New York, NY 10024.

Publications (25)

Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Tyler S Brown , Lavanya Challagundla , Evan H Baugh , Shaheed Vally Omar , Arkady Mustaev , Sara C Auld , N Sarita Shah , Barry N Kreiswirth , James C M Brust , Kristin N Nelson , Natalia Kurepina , Koleka Mlisana , Richard Bonneau , Vegard Eldholm , Nazir Ismail , Sergios-Orestis Kolokotronis , D Ashley Robinson , Neel R Gandhi , Barun Mathema

Local Diversification of Methicillin- Resistant

Frontiers in microbiology

Avec: Ana Maria Nunes Botelho , Maiana Oliveira Cerqueira E Costa , Ahmed M Moustafa , Cristiana Ossaille Beltrame , Fabienne Antunes Ferreira , Marina Farrel Côrtes , Bruno Souza Scramignon Costa , Deborah Nascimento Santos Silva , Paula Terra Bandeira , Nicholas Costa Barroso Lima , Rangel Celso Souza , Luiz Gonzaga Paula de Almeida , Ana Tereza Ribeiro Vasconcelos , Chanelle Ryan , Kelsey O'Brien , Sergios-Orestis Kolokotronis , Paul J Planet , Marisa Fabiana Nicolás , Agnes Marie Sá Figueiredo

Lumos: Increasing Awareness of Analytic Behavior during Visual Data Analysis.

IEEE transactions on visualization and computer graphics

Avec: Arpit Narechania , Adam Coscia , Emily Wall , Alex Endert

Antimicrobial sensing coupled with cell membrane remodeling mediates antibiotic resistance and virulence in

Proceedings of the National Academy of Sciences of the United States of America

Avec: Ayesha Khan , Milya Davlieva , Diana Panesso , Sandra Rincon , William R Miller , Lorena Diaz , Jinnethe Reyes , Melissa R Cruz , Orville Pemberton , April H Nguyen , Sara D Siegel , Paul J Planet , Mauricio Latorre , Rafael Rios , Kavindra V Singh , Hung Ton-That , Danielle A Garsin , Truc T Tran , Yousif Shamoo , Cesar A Arias

Morphological Characters Can Strongly Influence Early Animal Relationships Inferred from Phylogenomic Data Sets.

Systematic biology

Avec: Johannes S Neumann , Rob Desalle , Bernd Schierwater , Michael Tessler

One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade.

Scientific data

Avec: Jazmin Blaz , Luis Javier Galindo , Aaron A Heiss , Harpreet Kaur , Guifré Torruella , Ashley Yang , L Alexa Thompson , Alexander Filbert , Sally Warring , Takashi Shiratori , Ken-Ichiro Ishida , Joel B Dacks , Purificación López-García , David Moreira , Eunsoo Kim , Laura Eme

Rapid SARS-COV2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change.

Genome research

Avec: Dean Bobo , Kevin Deitz , Rob DeSalle , Paul Planet , Barun Mathema

Understanding Failure Mode Effect Analysis Data Using Interactive Visual Analytics.

IEEE computer graphics and applications

Avec: Rahul C Basole , Ahsan Qamar , Biswajyoti Pal , Michael Corral , Matthew Meinhart , Arpit Narechania , Mike Potel

Paleogenomics illuminates the evolutionary history of the extinct Holocene "horned" crocodile of Madagascar, Voay robustus.

Communications biology

Avec: E Hekkala , J Gatesy , A Narechania , R Meredith , M Russello , M L Aardema , E Jensen , S Montanari , C Brochu , M Norell , G Amato

Left, Right, and Gender: Exploring Interaction Traces to Mitigate Human Biases.

IEEE transactions on visualization and computer graphics

Avec: Emily Wall , Arpit Narechania , Adam Coscia , Jamal Paden , Alex Endert

The VA National Teleneurology Program (NTNP): Implementing Teleneurology to Improve Equitable Access to Outpatient Neurology Care.

Journal of general internal medicine

Avec: Jayne Wilkinson , Laura Myers , Joanne Daggy , Holly Martin , Grace Bastin , Ziyi Yang , Teresa Damush , Aditi Narechania , Steve Schriber , Linda S Williams

ProvenanceWidgets: A Library of UI Control Elements to Track and Dynamically Overlay Analytic Provenance.

IEEE transactions on visualization and computer graphics

Avec: Arpit Narechania , Kaustubh Odak , Mennatallah El-Assady , Alex Endert

Genomic variant-identification methods may alter

Microbial genomics

Avec: Katharine S Walter , Caroline Colijn , Ted Cohen , Barun Mathema , Qingyun Liu , Jolene Bowers , David M Engelthaler , Darrin Lemmer , Julio Croda , Jason R Andrews

Strains of Staphylococcus aureus that Colonize and Infect Skin Harbor Mutations in Metabolic Genes.

iScience

Avec: Karen P Acker , Tania Wong Fok Lung , Emily West , Joshua Craft , Hannah Smith , Kelsey O'Brien , Ahmed M Moustafa , Christine Lauren , Paul J Planet , Alice Prince

CFTR-PTEN-dependent mitochondrial metabolic dysfunction promotes

Science translational medicine

Avec: Sebastián A Riquelme , Carmen Lozano , Ahmed M Moustafa , Kalle Liimatta , Kira L Tomlinson , Clemente Britto , Sara Khanal , Simren K Gill , Jose M Azcona-Gutiérrez , Emily DiMango , Yolanda Saénz , Paul Planet , Alice Prince

NL4DV: A Toolkit for Generating Analytic Specifications for Data Visualization from Natural Language Queries.

IEEE transactions on visualization and computer graphics

Avec: Arpit Narechania , Arjun Srinivasan , John Stasko

SafetyLens: Visual Data Analysis of Functional Safety of Vehicles.

IEEE transactions on visualization and computer graphics

Avec: Arpit Narechania , Ahsan Qamar , Alex Endert

Long-Read-Based Genome Assembly Reveals Numerous Endogenous Viral Elements in the Green Algal Bacterivore Cymbomonas tetramitiformis.

Genome biology and evolution

Avec: Yangtsho Gyaltshen , Andrey Rozenberg , Amber Paasch , John A Burns , Sally Warring , Raegan T Larson , Xyrus X Maurer-Alcalá , Joel Dacks , Eunsoo Kim

Multiple outgroups can cause random rooting in phylogenomics.

Molecular phylogenetics and evolution

Avec: Rob DeSalle , Michael Tessler

Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure.

Scientific reports

Avec: Rafael Rios , Jinnethe Reyes , Lina P Carvajal , Sandra Rincon , Diana Panesso , Aura M Echeverri , An Dinh , Sergios-Orestis Kolokotronis , Truc T Tran , Jose M Munita , Barbara E Murray , Paul J Planet , Cesar A Arias , Lorena Diaz

Multidrug-Resistant Methicillin-Resistant Staphylococcus aureus Associated with Bacteremia and Monocyte Evasion, Rio de Janeiro, Brazil.

Emerging infectious diseases

Avec: Alice Slotfeldt Viana , Ana Maria Nunes Botelho , Ahmed M Moustafa , Craig L K Boge , Adriana Lucia Pires Ferreira , Maria Cícera da Silva Carvalho , Márcia Aparecida Guimarães , Bruno de Souza Scramignon Costa , Marcos Corrêa de Mattos , Sabrina Pires Maciel , Juliana Echevarria-Lima , Kelsey O'Brien , Chanelle Ryan , Jeffrey S Gerber , Bernadete Teixeira Ferreira Carvalho , Agnes Marie Sá Figueiredo , Paul J Planet

VITALITY: Promoting Serendipitous Discovery of Academic Literature with Transformers & Visual Analytics.

IEEE transactions on visualization and computer graphics

Avec: Arpit Narechania , Alireza Karduni , Ryan Wesslen , Emily Wall

Adaptation by Ancient Horizontal Acquisition of Butyrate Metabolism Genes in Aggregatibacter actinomycetemcomitans.

mBio

Avec: Ahmed M Moustafa , Senthil Kumar Velusamy , Lidiya Denu , Daniel H Fine , Paul J Planet

Genetic variation of staphylococcal LukAB toxin determines receptor tropism.

Nature microbiology

Avec: Sofya S Perelman , David B A James , Kristina M Boguslawski , Chase W Nelson , Juliana K Ilmain , Erin E Zwack , Rachel A Prescott , Adil Mohamed , Kayan Tam , Rita Chan , Miranda B Pawline , Nikollaq Vozhilla , Ahmed M Moustafa , Sang Y Kim , Meike Dittmann , Damian C Ekiert , Gira Bhabha , Bo Shopsin , Paul J Planet , Sergei B Koralov , Victor J Torres

The VA National TeleNeurology Program implementation: a mixed-methods evaluation guided by RE-AIM framework.

Frontiers in health services

Avec: Teresa M Damush , Jayne R Wilkinson , Holly Martin , Edward J Miech , Qing Tang , Stanley Taylor , Joanne K Daggy , Grace Bastin , Robin Islam , Laura J Myers , Lauren S Penney , Aditi Narechania , Steve S Schreiber , Linda S Williams

Réseau de co-auteurs

Paul J Planet 7 collaborations

Arpit Narechania 7 collaborations

Ahmed M Moustafa 6 collaborations

Alex Endert 4 collaborations

Sergios-Orestis Kolokotronis 3 collaborations

Barun Mathema 3 collaborations

Kelsey O'Brien 3 collaborations

Emily Wall 3 collaborations

Ana Maria Nunes Botelho 2 collaborations

Chanelle Ryan 2 collaborations

Agnes Marie Sá Figueiredo 2 collaborations

Adam Coscia 2 collaborations

Diana Panesso 2 collaborations

Sandra Rincon 2 collaborations

Lorena Diaz 2 collaborations

Jinnethe Reyes 2 collaborations

Rafael Rios 2 collaborations

Truc T Tran 2 collaborations

Cesar A Arias 2 collaborations

Michael Tessler 2 collaborations

Sally Warring 2 collaborations

Eunsoo Kim 2 collaborations

Rob DeSalle 2 collaborations

Paul Planet 2 collaborations

Ahsan Qamar 2 collaborations

Holly Martin 2 collaborations

Grace Bastin 2 collaborations

Aditi Narechania 2 collaborations

Linda S Williams 2 collaborations

Alice Prince 2 collaborations

Tyler S Brown 1 collaboration

Lavanya Challagundla 1 collaboration

Evan H Baugh 1 collaboration

Shaheed Vally Omar 1 collaboration

Arkady Mustaev 1 collaboration

Sara C Auld 1 collaboration

N Sarita Shah 1 collaboration

Barry N Kreiswirth 1 collaboration

James C M Brust 1 collaboration

Kristin N Nelson 1 collaboration

Natalia Kurepina 1 collaboration

Koleka Mlisana 1 collaboration

Richard Bonneau 1 collaboration

Vegard Eldholm 1 collaboration

Nazir Ismail 1 collaboration

D Ashley Robinson 1 collaboration

Neel R Gandhi 1 collaboration

Maiana Oliveira Cerqueira E Costa 1 collaboration

Cristiana Ossaille Beltrame 1 collaboration

Fabienne Antunes Ferreira 1 collaboration

Marina Farrel Côrtes 1 collaboration

Bruno Souza Scramignon Costa 1 collaboration

Deborah Nascimento Santos Silva 1 collaboration

Paula Terra Bandeira 1 collaboration

Nicholas Costa Barroso Lima 1 collaboration

Rangel Celso Souza 1 collaboration

Luiz Gonzaga Paula de Almeida 1 collaboration

Ana Tereza Ribeiro Vasconcelos 1 collaboration

Marisa Fabiana Nicolás 1 collaboration

Ayesha Khan 1 collaboration

Milya Davlieva 1 collaboration

William R Miller 1 collaboration

Melissa R Cruz 1 collaboration

Orville Pemberton 1 collaboration

April H Nguyen 1 collaboration

Sara D Siegel 1 collaboration

Mauricio Latorre 1 collaboration

Kavindra V Singh 1 collaboration

Hung Ton-That 1 collaboration

Danielle A Garsin 1 collaboration

Yousif Shamoo 1 collaboration

Johannes S Neumann 1 collaboration

Rob Desalle 1 collaboration

Bernd Schierwater 1 collaboration

Jazmin Blaz 1 collaboration

Luis Javier Galindo 1 collaboration

Aaron A Heiss 1 collaboration

Harpreet Kaur 1 collaboration

Guifré Torruella 1 collaboration

Ashley Yang 1 collaboration

L Alexa Thompson 1 collaboration

Alexander Filbert 1 collaboration

Takashi Shiratori 1 collaboration

Ken-Ichiro Ishida 1 collaboration

Joel B Dacks 1 collaboration

Purificación López-García 1 collaboration

David Moreira 1 collaboration

Laura Eme 1 collaboration

Dean Bobo 1 collaboration

Kevin Deitz 1 collaboration

Rahul C Basole 1 collaboration

Biswajyoti Pal 1 collaboration

Michael Corral 1 collaboration

Matthew Meinhart 1 collaboration

Mike Potel 1 collaboration

E Hekkala 1 collaboration

J Gatesy 1 collaboration

A Narechania 1 collaboration

R Meredith 1 collaboration

M Russello 1 collaboration

M L Aardema 1 collaboration

E Jensen 1 collaboration

S Montanari 1 collaboration

C Brochu 1 collaboration

M Norell 1 collaboration

G Amato 1 collaboration

Jamal Paden 1 collaboration

Jayne Wilkinson 1 collaboration

Laura Myers 1 collaboration

Joanne Daggy 1 collaboration

Ziyi Yang 1 collaboration

Teresa Damush 1 collaboration

Steve Schriber 1 collaboration

Kaustubh Odak 1 collaboration

Mennatallah El-Assady 1 collaboration

Katharine S Walter 1 collaboration

Caroline Colijn 1 collaboration

Ted Cohen 1 collaboration

Qingyun Liu 1 collaboration

Jolene Bowers 1 collaboration

David M Engelthaler 1 collaboration

Darrin Lemmer 1 collaboration

Julio Croda 1 collaboration

Jason R Andrews 1 collaboration

Karen P Acker 1 collaboration

Tania Wong Fok Lung 1 collaboration

Emily West 1 collaboration

Joshua Craft 1 collaboration

Hannah Smith 1 collaboration

Christine Lauren 1 collaboration

Sebastián A Riquelme 1 collaboration

Carmen Lozano 1 collaboration

Kalle Liimatta 1 collaboration

Kira L Tomlinson 1 collaboration

Clemente Britto 1 collaboration

Sara Khanal 1 collaboration

Simren K Gill 1 collaboration

Jose M Azcona-Gutiérrez 1 collaboration

Emily DiMango 1 collaboration

Yolanda Saénz 1 collaboration

Arjun Srinivasan 1 collaboration

John Stasko 1 collaboration

Yangtsho Gyaltshen 1 collaboration

Andrey Rozenberg 1 collaboration

Amber Paasch 1 collaboration

John A Burns 1 collaboration

Raegan T Larson 1 collaboration

Xyrus X Maurer-Alcalá 1 collaboration

Joel Dacks 1 collaboration

Lina P Carvajal 1 collaboration

Aura M Echeverri 1 collaboration

An Dinh 1 collaboration

Jose M Munita 1 collaboration

Barbara E Murray 1 collaboration

Alice Slotfeldt Viana 1 collaboration

Craig L K Boge 1 collaboration

Adriana Lucia Pires Ferreira 1 collaboration

Maria Cícera da Silva Carvalho 1 collaboration

Márcia Aparecida Guimarães 1 collaboration

Bruno de Souza Scramignon Costa 1 collaboration

Marcos Corrêa de Mattos 1 collaboration

Sabrina Pires Maciel 1 collaboration

Juliana Echevarria-Lima 1 collaboration

Jeffrey S Gerber 1 collaboration

Bernadete Teixeira Ferreira Carvalho 1 collaboration

Alireza Karduni 1 collaboration

Ryan Wesslen 1 collaboration

Senthil Kumar Velusamy 1 collaboration

Lidiya Denu 1 collaboration

Daniel H Fine 1 collaboration

Sofya S Perelman 1 collaboration

David B A James 1 collaboration

Kristina M Boguslawski 1 collaboration

Chase W Nelson 1 collaboration

Juliana K Ilmain 1 collaboration

Erin E Zwack 1 collaboration

Rachel A Prescott 1 collaboration

Adil Mohamed 1 collaboration

Kayan Tam 1 collaboration

Rita Chan 1 collaboration

Miranda B Pawline 1 collaboration

Nikollaq Vozhilla 1 collaboration

Sang Y Kim 1 collaboration

Meike Dittmann 1 collaboration

Damian C Ekiert 1 collaboration

Gira Bhabha 1 collaboration

Bo Shopsin 1 collaboration

Sergei B Koralov 1 collaboration

Victor J Torres 1 collaboration

Teresa M Damush 1 collaboration

Jayne R Wilkinson 1 collaboration

Edward J Miech 1 collaboration

Qing Tang 1 collaboration

Stanley Taylor 1 collaboration

Joanne K Daggy 1 collaboration

Robin Islam 1 collaboration

Laura J Myers 1 collaboration

Lauren S Penney 1 collaboration

Steve S Schreiber 1 collaboration