Anil Korkut

Affiliations

Department of Bioinformatics and Computational Biology, UT MD Anderson Cancer Center, Houston, TX, 77030, USA. akorkut@mdanderson.org.

ORCID: 0000-0001-8072-9026

Publications (11)

Mapping the functional interactions at the tumor-immune checkpoint interface.

Communications biology

Avec: Behnaz Bozorgui , Elisabeth K Kong , Augustin Luna ,

Multiparametric MRI-based radiomic models for early prediction of response to neoadjuvant systemic therapy in triple-negative breast cancer.

Scientific reports

Avec: Rania M Mohamed , Bikash Panthi , Beatriz E Adrada , Medine Boge , Rosalind P Candelaria , Huiqin Chen , Mary S Guirguis , Kelly K Hunt , Lei Huo , Ken-Pin Hwang , Jennifer K Litton , Tanya W Moseley , Sanaz Pashapoor , Miral M Patel , Brandy Reed , Marion E Scoggins , Jong Bum Son , Alastair Thompson , Debu Tripathy , Vicente Valero , Peng Wei , Jason White , Gary J Whitman , Zhan Xu , Wei Yang , Clinton Yam , Jingfei Ma , Gaiane M Rauch

Assessment of Response to Neoadjuvant Systemic Treatment in Triple-Negative Breast Cancer Using Functional Tumor Volumes from Longitudinal Dynamic Contrast-Enhanced MRI.

Cancers

Avec: Bikash Panthi , Beatriz E Adrada , Rosalind P Candelaria , Mary S Guirguis , Clinton Yam , Medine Boge , Huiqin Chen , Kelly K Hunt , Lei Huo , Ken-Pin Hwang , Deanna L Lane , Huong C Le-Petross , Jessica W T Leung , Jennifer K Litton , Rania M Mohamed , Benjamin C Musall , Sanaz Pashapoor , Miral M Patel , Frances Perez , Jong Bum Son , Alastair Thompson , Vicente Valero , Peng Wei , Jason White , Zhan Xu , Lawrence Pinsky , Debu Tripathy , Wei Yang , Jingfei Ma , Gaiane M Rauch

Comprehensive Immunogenomic Profiling of

JCO precision oncology

Avec: Shalini Makawita , Sunyoung Lee , Elisabeth Kong , Lawrence N Kwong , Zeyad Abouelfetouh , Anaemy Danner De Armas , Lianchun Xiao , Karthikeyan Murugesan , Natalie Danziger , Dean Pavlick , Jeffrey S Ross , Milind Javle

Targeting the EGFR pathway in chemotherapy-resistant triple-negative breast cancer - a phase II study.

Cancer research communications

Avec: Clinton Yam , Miral Patel , Holly A Hill , Ryan Sun , Roland L Bassett , Elisabeth Kong , Senthil Damodaran , Kimberly B Koenig , Sausan Abouharb , Sadia Saleem , Ajit K Bisen , Rashmi K Murthy , David L Ramirez , Gaiane M Rauch , Beatriz E Adrada , Rosalind P Candelaria , Xiaoping Wang , Elizabeth A Mittendorf , Alastair M Thompson , Jason B White , Elizabeth E Ravenberg , Alyson R Clayborn , Qing-Qing Ding , Daniel J Booser , Oluchi Oke , Abenaa M Brewster , Gabriel N Hortobagyi , Nuhad K Ibrahim , Jennifer K Litton , Vicente Valero , Banu K Arun , Debu Tripathy , Jeffrey T Chang , Ken Chen , Stacy L Moulder , Lei Huo , Bora Lim , Naoto T Ueno

Large-Scale Characterization of Drug Responses of Clinically Relevant Proteins in Cancer Cell Lines.

Cancer cell

Avec: Wei Zhao , Jun Li , Mei-Ju M Chen , Yikai Luo , Zhenlin Ju , Nicole K Nesser , Katie Johnson-Camacho , Christopher T Boniface , Yancey Lawrence , Nupur T Pande , Michael A Davies , Meenhard Herlyn , Taru Muranen , Ioannis K Zervantonakis , Erika von Euw , Andre Schultz , Shwetha V Kumar , Paul T Spellman , Rehan Akbani , Dennis J Slamon , Joe W Gray , Joan S Brugge , Yiling Lu , Gordon B Mills , Han Liang

CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy.

Cell systems

Avec: Bo Yuan , Ciyue Shen , Augustin Luna , Debora S Marks , John Ingraham , Chris Sander

Combining Neratinib with CDK4/6, mTOR, and MEK Inhibitors in Models of HER2-positive Cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Ming Zhao , Stephen Scott , Kurt W Evans , Erkan Yuca , Turcin Saridogan , Xiaofeng Zheng , Heping Wang , Christian X Cruz Pico , Mehmet Demirhan , Bryce Kirby , Scott Kopetz , Irmina Diala , Alshad S Lalani , Sarina Piha-Paul , Funda Meric-Bernstam

Causal interactions from proteomic profiles: Molecular data meet pathway knowledge.

Patterns (New York, N.Y.)

Avec: Özgün Babur , Augustin Luna , Funda Durupinar , Metin Can Siper , Ugur Dogrusoz , Alvaro Sebastian Vaca Jacome , Ryan Peckner , Karen E Christianson , Jacob D Jaffe , Paul T Spellman , Joseph E Aslan , Chris Sander , Emek Demir

Precision Combination Therapies Based on Recurrent Oncogenic Coalterations.

Cancer discovery

Avec: Xubin Li , Elisabeth K Dowling , Gonghong Yan , Zeynep Dereli , Behnaz Bozorgui , Parisa Imanirad , Jacob H Elnaggar , Augustin Luna , David G Menter , Patrick G Pilié , Timothy A Yap , Scott Kopetz , Chris Sander ,

Longitudinal dynamic contrast-enhanced MRI radiomic models for early prediction of response to neoadjuvant systemic therapy in triple-negative breast cancer.

Frontiers in oncology

Avec: Bikash Panthi , Rania M Mohamed , Beatriz E Adrada , Medine Boge , Rosalind P Candelaria , Huiqin Chen , Kelly K Hunt , Lei Huo , Ken-Pin Hwang , Deanna L Lane , Huong C Le-Petross , Jessica W T Leung , Jennifer K Litton , Sanaz Pashapoor , Frances Perez , Jong Bum Son , Jia Sun , Alastair Thompson , Debu Tripathy , Vicente Valero , Peng Wei , Jason White , Zhan Xu , Wei Yang , Zijian Zhou , Clinton Yam , Gaiane M Rauch , Jingfei Ma

Réseau de co-auteurs

Augustin Luna 4 collaborations

Beatriz E Adrada 4 collaborations

Rosalind P Candelaria 4 collaborations

Lei Huo 4 collaborations

Jennifer K Litton 4 collaborations

Debu Tripathy 4 collaborations

Vicente Valero 4 collaborations

Clinton Yam 4 collaborations

Gaiane M Rauch 4 collaborations

Rania M Mohamed 3 collaborations

Bikash Panthi 3 collaborations

Medine Boge 3 collaborations

Huiqin Chen 3 collaborations

Kelly K Hunt 3 collaborations

Ken-Pin Hwang 3 collaborations

Sanaz Pashapoor 3 collaborations

Jong Bum Son 3 collaborations

Alastair Thompson 3 collaborations

Peng Wei 3 collaborations

Jason White 3 collaborations

Zhan Xu 3 collaborations

Wei Yang 3 collaborations

Jingfei Ma 3 collaborations

Chris Sander 3 collaborations

Behnaz Bozorgui 2 collaborations

Mary S Guirguis 2 collaborations

Miral M Patel 2 collaborations

Deanna L Lane 2 collaborations

Huong C Le-Petross 2 collaborations

Jessica W T Leung 2 collaborations

Frances Perez 2 collaborations

Elisabeth Kong 2 collaborations

Paul T Spellman 2 collaborations

Scott Kopetz 2 collaborations

Elisabeth K Kong 1 collaboration

Tanya W Moseley 1 collaboration

Brandy Reed 1 collaboration

Marion E Scoggins 1 collaboration

Gary J Whitman 1 collaboration

Benjamin C Musall 1 collaboration

Lawrence Pinsky 1 collaboration

Shalini Makawita 1 collaboration

Sunyoung Lee 1 collaboration

Lawrence N Kwong 1 collaboration

Zeyad Abouelfetouh 1 collaboration

Anaemy Danner De Armas 1 collaboration

Lianchun Xiao 1 collaboration

Karthikeyan Murugesan 1 collaboration

Natalie Danziger 1 collaboration

Dean Pavlick 1 collaboration

Jeffrey S Ross 1 collaboration

Milind Javle 1 collaboration

Miral Patel 1 collaboration

Holly A Hill 1 collaboration

Ryan Sun 1 collaboration

Roland L Bassett 1 collaboration

Senthil Damodaran 1 collaboration

Kimberly B Koenig 1 collaboration

Sausan Abouharb 1 collaboration

Sadia Saleem 1 collaboration

Ajit K Bisen 1 collaboration

Rashmi K Murthy 1 collaboration

David L Ramirez 1 collaboration

Xiaoping Wang 1 collaboration

Elizabeth A Mittendorf 1 collaboration

Alastair M Thompson 1 collaboration

Jason B White 1 collaboration

Elizabeth E Ravenberg 1 collaboration

Alyson R Clayborn 1 collaboration

Qing-Qing Ding 1 collaboration

Daniel J Booser 1 collaboration

Oluchi Oke 1 collaboration

Abenaa M Brewster 1 collaboration

Gabriel N Hortobagyi 1 collaboration

Nuhad K Ibrahim 1 collaboration

Banu K Arun 1 collaboration

Jeffrey T Chang 1 collaboration

Ken Chen 1 collaboration

Stacy L Moulder 1 collaboration

Bora Lim 1 collaboration

Naoto T Ueno 1 collaboration

Wei Zhao 1 collaboration

Jun Li 1 collaboration

Mei-Ju M Chen 1 collaboration

Yikai Luo 1 collaboration

Zhenlin Ju 1 collaboration

Nicole K Nesser 1 collaboration

Katie Johnson-Camacho 1 collaboration

Christopher T Boniface 1 collaboration

Yancey Lawrence 1 collaboration

Nupur T Pande 1 collaboration

Michael A Davies 1 collaboration

Meenhard Herlyn 1 collaboration

Taru Muranen 1 collaboration

Ioannis K Zervantonakis 1 collaboration

Erika von Euw 1 collaboration

Andre Schultz 1 collaboration

Shwetha V Kumar 1 collaboration

Rehan Akbani 1 collaboration

Dennis J Slamon 1 collaboration

Joe W Gray 1 collaboration

Joan S Brugge 1 collaboration

Yiling Lu 1 collaboration

Gordon B Mills 1 collaboration

Han Liang 1 collaboration

Bo Yuan 1 collaboration

Ciyue Shen 1 collaboration

Debora S Marks 1 collaboration

John Ingraham 1 collaboration

Ming Zhao 1 collaboration

Stephen Scott 1 collaboration

Kurt W Evans 1 collaboration

Erkan Yuca 1 collaboration

Turcin Saridogan 1 collaboration

Xiaofeng Zheng 1 collaboration

Heping Wang 1 collaboration

Christian X Cruz Pico 1 collaboration

Mehmet Demirhan 1 collaboration

Bryce Kirby 1 collaboration

Irmina Diala 1 collaboration

Alshad S Lalani 1 collaboration

Sarina Piha-Paul 1 collaboration

Funda Meric-Bernstam 1 collaboration

Özgün Babur 1 collaboration

Funda Durupinar 1 collaboration

Metin Can Siper 1 collaboration

Ugur Dogrusoz 1 collaboration

Alvaro Sebastian Vaca Jacome 1 collaboration

Ryan Peckner 1 collaboration

Karen E Christianson 1 collaboration

Jacob D Jaffe 1 collaboration

Joseph E Aslan 1 collaboration

Emek Demir 1 collaboration

Xubin Li 1 collaboration

Elisabeth K Dowling 1 collaboration

Gonghong Yan 1 collaboration

Zeynep Dereli 1 collaboration

Parisa Imanirad 1 collaboration

Jacob H Elnaggar 1 collaboration

David G Menter 1 collaboration

Patrick G Pilié 1 collaboration

Timothy A Yap 1 collaboration

Jia Sun 1 collaboration

Zijian Zhou 1 collaboration