Andrey D Prjibelski

Affiliations
  • Department of Computer Science, University of Helsinki, Helsinki, Finland.
  • Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.
  • These authors contributed equally to this work.

Publications (18)

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.

bioRxiv : the preprint server for biology
Avec: Francisco J Pardo-Palacios , Dingjie Wang , Fairlie Reese , Mark Diekhans , Sílvia Carbonell-Sala , Brian Williams , Jane E Loveland , Maite De María , Matthew S Adams , Gabriela Balderrama-Gutierrez , Amit K Behera , Jose M Gonzalez , Toby Hunt , Julien Lagarde , Cindy E Liang , Haoran Li , Marcus Jerryd Meade , David A Moraga Amador , Inanc Birol , Hamed Bostan , Ashley M Brooks , Muhammed Hasan Çelik , Ying Chen , Mei R M Du , Colette Felton , Jonathan Göke , Saber Hafezqorani , Ralf Herwig , Hideya Kawaji , Joseph Lee , Jian Liang Li , Matthias Lienhard , Alla Mikheenko , Dennis Mulligan , Ka Ming Nip , Mihaela Pertea , Matthew E Ritchie , Andre D Sim , Alison D Tang , Yuk Kei Wan , Changqing Wang , Brandon Y Wong , Chen Yang , If Barnes , Andrew Berry , Salvador Capella , Namrita Dhillon , Jose M Fernandez-Gonzalez , Luis Ferrández-Peral , Natàlia Garcia-Reyero , Stefan Goetz , Carles Hernández-Ferrer , Liudmyla Kondratova , Tianyuan Liu , Alessandra Martinez-Martin , Carlos Menor , Jorge Mestre-Tomás , Jonathan M Mudge , Nedka G Panayotova , Alejandro Paniagua , Dmitry Repchevsky , Eric Rouchka , Brandon Saint-John , Enrique Sapena , Leon Sheynkman , Melissa Laird Smith , Marie-Marthe Suner , Hazuki Takahashi , Ingrid Ashley Youngworth , Piero Carninci , Nancy D Denslow , Roderic Guigó , Margaret E Hunter , Hagen U Tilgner , Barbara J Wold , Christopher Vollmers , Adam Frankish , Kin Fai Au , Gloria M Sheynkman , Ali Mortazavi , Ana Conesa , Angela N Brooks

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.

Nature methods
Avec: Francisco J Pardo-Palacios , Dingjie Wang , Fairlie Reese , Mark Diekhans , Sílvia Carbonell-Sala , Brian Williams , Jane E Loveland , Maite De María , Matthew S Adams , Gabriela Balderrama-Gutierrez , Amit K Behera , Jose M Gonzalez Martinez , Toby Hunt , Julien Lagarde , Cindy E Liang , Haoran Li , Marcus Jerryd Meade , David A Moraga Amador , Inanc Birol , Hamed Bostan , Ashley M Brooks , Muhammed Hasan Çelik , Ying Chen , Mei R M Du , Colette Felton , Jonathan Göke , Saber Hafezqorani , Ralf Herwig , Hideya Kawaji , Joseph Lee , Jian-Liang Li , Matthias Lienhard , Alla Mikheenko , Dennis Mulligan , Ka Ming Nip , Mihaela Pertea , Matthew E Ritchie , Andre D Sim , Alison D Tang , Yuk Kei Wan , Changqing Wang , Brandon Y Wong , Chen Yang , If Barnes , Andrew E Berry , Salvador Capella-Gutierrez , Alyssa Cousineau , Namrita Dhillon , Jose M Fernandez-Gonzalez , Luis Ferrández-Peral , Natàlia Garcia-Reyero , Stefan Götz , Carles Hernández-Ferrer , Liudmyla Kondratova , Tianyuan Liu , Alessandra Martinez-Martin , Carlos Menor , Jorge Mestre-Tomás , Jonathan M Mudge , Nedka G Panayotova , Alejandro Paniagua , Dmitry Repchevsky , Xingjie Ren , Eric Rouchka , Brandon Saint-John , Enrique Sapena , Leon Sheynkman , Melissa Laird Smith , Marie-Marthe Suner , Hazuki Takahashi , Ingrid A Youngworth , Piero Carninci , Nancy D Denslow , Roderic Guigó , Margaret E Hunter , Rene Maehr , Yin Shen , Hagen U Tilgner , Barbara J Wold , Christopher Vollmers , Adam Frankish , Kin Fai Au , Gloria M Sheynkman , Ali Mortazavi , Ana Conesa , Angela N Brooks

Réseau de co-auteurs

Alla Mikheenko 6 collaborations
Hagen U Tilgner 5 collaborations
Giuseppe D Puglia 3 collaborations
Elena Bushmanova 3 collaborations
Domenico Vitale 3 collaborations
Anoushka Joglekar 3 collaborations
Raul R Gainetdinov 3 collaborations
Dingjie Wang 2 collaborations
Fairlie Reese 2 collaborations
Mark Diekhans 2 collaborations
Sílvia Carbonell-Sala 2 collaborations
Brian Williams 2 collaborations
Jane E Loveland 2 collaborations
Maite De María 2 collaborations
Matthew S Adams 2 collaborations
Amit K Behera 2 collaborations
Toby Hunt 2 collaborations
Julien Lagarde 2 collaborations
Cindy E Liang 2 collaborations
Haoran Li 2 collaborations
Marcus Jerryd Meade 2 collaborations
David A Moraga Amador 2 collaborations
Inanc Birol 2 collaborations
Hamed Bostan 2 collaborations
Ashley M Brooks 2 collaborations
Muhammed Hasan Çelik 2 collaborations
Ying Chen 2 collaborations
Mei R M Du 2 collaborations
Colette Felton 2 collaborations
Jonathan Göke 2 collaborations
Saber Hafezqorani 2 collaborations
Ralf Herwig 2 collaborations
Hideya Kawaji 2 collaborations
Joseph Lee 2 collaborations
Matthias Lienhard 2 collaborations
Dennis Mulligan 2 collaborations
Ka Ming Nip 2 collaborations
Mihaela Pertea 2 collaborations
Matthew E Ritchie 2 collaborations
Andre D Sim 2 collaborations
Alison D Tang 2 collaborations
Yuk Kei Wan 2 collaborations
Changqing Wang 2 collaborations
Brandon Y Wong 2 collaborations
Chen Yang 2 collaborations
If Barnes 2 collaborations
Namrita Dhillon 2 collaborations
Luis Ferrández-Peral 2 collaborations
Natàlia Garcia-Reyero 2 collaborations
Liudmyla Kondratova 2 collaborations
Tianyuan Liu 2 collaborations
Carlos Menor 2 collaborations
Jorge Mestre-Tomás 2 collaborations
Jonathan M Mudge 2 collaborations
Nedka G Panayotova 2 collaborations
Alejandro Paniagua 2 collaborations
Dmitry Repchevsky 2 collaborations
Eric Rouchka 2 collaborations
Brandon Saint-John 2 collaborations
Enrique Sapena 2 collaborations
Leon Sheynkman 2 collaborations
Melissa Laird Smith 2 collaborations
Marie-Marthe Suner 2 collaborations
Hazuki Takahashi 2 collaborations
Piero Carninci 2 collaborations
Nancy D Denslow 2 collaborations
Roderic Guigó 2 collaborations
Margaret E Hunter 2 collaborations
Barbara J Wold 2 collaborations
Christopher Vollmers 2 collaborations
Adam Frankish 2 collaborations
Kin Fai Au 2 collaborations
Gloria M Sheynkman 2 collaborations
Ali Mortazavi 2 collaborations
Ana Conesa 2 collaborations
Angela N Brooks 2 collaborations
Dmitry Antipov 2 collaborations
Alla Lapidus 2 collaborations
Salvatore A Raccuia 2 collaborations
Nataliia V Katolikova 2 collaborations
Julien Jarroux 2 collaborations
Alla L Lapidus 2 collaborations
Mikael S Mor 2 collaborations
Evgeniya V Efimova 2 collaborations
Daria Shafranskaya 2 collaborations
Daria D Shafranskaya 2 collaborations
Jose M Gonzalez 1 collaboration
Jian Liang Li 1 collaboration
Andrew Berry 1 collaboration
Salvador Capella 1 collaboration
Stefan Goetz 1 collaboration
Daniela Giordano 1 collaboration
Karl J Schmid 1 collaboration
Stanislav S Terekhov 1 collaboration
Igor E Eliseev 1 collaboration
Leyla A Ovchinnikova 1 collaboration
Marsel R Kabilov 1 collaboration
Alexey E Tupikin 1 collaboration
Ivan V Smirnov 1 collaboration
Alexey A Belogurov 1 collaboration
Konstantin V Severinov 1 collaboration
Yakov A Lomakin 1 collaboration
Sidney Altman 1 collaboration
Alexander G Gabibov 1 collaboration
M A Dobrynin 1 collaboration
N M Korchagina 1 collaboration
A D Prjibelski 1 collaboration
D Shafranskaya 1 collaboration
D I Ostromyshenskii 1 collaboration
K Shunkina 1 collaboration
I Stepanova 1 collaboration
A V Kotova 1 collaboration
O I Podgornaya 1 collaboration
N I Enukashvily 1 collaboration
Olga Kunyavskaya 1 collaboration
Anastasia N Vaganova 1 collaboration
Ramilya Z Murtazina 1 collaboration
Taisiia S Shemyakova 1 collaboration
Alexander Smetanin 1 collaboration
Hector R Huarte 1 collaboration
Konstantin A Demin 1 collaboration
Anton M Lakstygal 1 collaboration
Nataliya A Krotova 1 collaboration
Alexey Masharsky 1 collaboration
Natsuki Tagawa 1 collaboration
Maria V Chernysh 1 collaboration
Nikita P Ilyin 1 collaboration
Alexander S Taranov 1 collaboration
David S Galstyan 1 collaboration
Ksenia A Derzhavina 1 collaboration
Nataliia A Levchenko 1 collaboration
Tatiana O Kolesnikova 1 collaboration
Marina L Vasyutina 1 collaboration
Nataliia Katolikova 1 collaboration
Murilo S de Abreu 1 collaboration
Tatyana Strekalova 1 collaboration
Allan V Kalueff 1 collaboration
Simon A Hardwick 1 collaboration
Wen Hu 1 collaboration
Li Fan 1 collaboration
Paul G Collier 1 collaboration
Careen Foord 1 collaboration
Jennifer Balacco 1 collaboration
Samantha Lanjewar 1 collaboration
Frank Koopmans 1 collaboration
Natan Belchikov 1 collaboration
Anne Bergstrom Lucas 1 collaboration
Miklós Palkovits 1 collaboration
Wenjie Luo 1 collaboration
Teresa A Milner 1 collaboration
Lishomwa C Ndhlovu 1 collaboration
August B Smit 1 collaboration
John Q Trojanowski 1 collaboration
Virginia M Y Lee 1 collaboration
Olivier Fedrigo 1 collaboration
Steven A Sloan 1 collaboration
Dóra Tombácz 1 collaboration
M Elizabeth Ross 1 collaboration
Erich Jarvis 1 collaboration
Zsolt Boldogkői 1 collaboration
Li Gan 1 collaboration
Francesco Pepe 1 collaboration
Gianluca Russo 1 collaboration
Alessandro Venuta 1 collaboration
Claudia Scimone 1 collaboration
Mariantonia Nacchio 1 collaboration
Pasquale Pisapia 1 collaboration
Gaia Goteri 1 collaboration
Francesca Barbisan 1 collaboration
Caterina Chiappetta 1 collaboration
Angelina Pernazza 1 collaboration
Domenico Campagna 1 collaboration
Marco Giordano 1 collaboration
Giuseppe Perrone 1 collaboration
Giovanna Sabarese 1 collaboration
Annalisa Altimari 1 collaboration
Dario de Biase 1 collaboration
Giovanni Tallini 1 collaboration
Daniele Calistri 1 collaboration
Elisa Chiadini 1 collaboration
Laura Capelli 1 collaboration
Alfredo Santinelli 1 collaboration
Anna Elisa Gulini 1 collaboration
Elisa Pierpaoli 1 collaboration
Manuela Badiali 1 collaboration
Stefania Murru 1 collaboration
Riccardo Murgia 1 collaboration
Elena Guerini Rocco 1 collaboration
Konstantinos Venetis 1 collaboration
Nicola Fusco 1 collaboration
Denise Morotti 1 collaboration
Andrea Gianatti 1 collaboration
Daniela Furlan 1 collaboration
Giulio Rossi 1 collaboration
Laura Melocchi 1 collaboration
Maria Russo 1 collaboration
Caterina De Luca 1 collaboration
Lucia Palumbo 1 collaboration
Saverio Simonelli 1 collaboration
Antonella Maffè 1 collaboration
Paola Francia di Celle 1 collaboration
Tiziana Venesio 1 collaboration
Maria Scatolini 1 collaboration
Enrico Grosso 1 collaboration
Sara Orecchia 1 collaboration
Matteo Fassan 1 collaboration
Mariangela Balistreri 1 collaboration
Elisabetta Zulato 1 collaboration
Daniela Reghellin 1 collaboration
Elena Lazzari 1 collaboration
Maria Santacatterina 1 collaboration
Maria Liliana Piredda 1 collaboration
Manuela Riccardi 1 collaboration
Licia Laurino 1 collaboration
Elena Roz 1 collaboration
Domenico Longo 1 collaboration
Carmine Fazzari 1 collaboration
Andrea Moreno-Manuel 1 collaboration
Giuseppe Diego Puglia 1 collaboration
Luisella Righi 1 collaboration
Angela Listì 1 collaboration
Antonino Iaccarino 1 collaboration
Umberto Malapelle 1 collaboration
Giancarlo Troncone 1 collaboration
Natella I Enukashvily 1 collaboration
Nikita V Ponomartsev 1 collaboration
Avanee Ketkar 1 collaboration
Roman Suezov 1 collaboration
Anna V Chubar 1 collaboration
Sabrina Elmshäuser 1 collaboration
Corinna U Keber 1 collaboration
Vera N Stefanova 1 collaboration
Andrey L Akopov 1 collaboration
Ursula Klingmüller 1 collaboration
Petra I Pfefferle 1 collaboration
Thorsten Stiewe 1 collaboration
Matthias Lauth 1 collaboration
Anna I Brichkina 1 collaboration
Aleksandr A Khudiakov 1 collaboration
Alexey E Masharskiy 1 collaboration
Alexey S Golovkin 1 collaboration
Anastasia K Zaytseva 1 collaboration
Irina E Neganova 1 collaboration
Anna B Malashicheva 1 collaboration
Varsha Kale 1 collaboration
Rob Finn 1 collaboration
Anton Korobeynikov 1 collaboration
Jian-Liang Li 1 collaboration
Andrew E Berry 1 collaboration
Alyssa Cousineau 1 collaboration
Stefan Götz 1 collaboration
Xingjie Ren 1 collaboration
Ingrid A Youngworth 1 collaboration
Rene Maehr 1 collaboration
Yin Shen 1 collaboration