Alexander S Szalay

Affiliations

The Mark Foundation Center for Advanced Genomics and Imaging, Johns Hopkins University, Baltimore, MD 21287, USA.
Department of Astronomy and Physics, Johns Hopkins University, Baltimore, MD 21218, USA.
Institute for Data Intensive Engineering and Science, Johns Hopkins University, Baltimore, MD 21218, USA.

ORCID: 0000-0002-4108-3282

Publications (12)

Analysis of multispectral imaging with the AstroPath platform informs efficacy of PD-1 blockade.

Science (New York, N.Y.)

Avec: Sneha Berry , Nicolas A Giraldo , Benjamin F Green , Tricia R Cottrell , Julie E Stein , Elizabeth L Engle , Haiying Xu , Aleksandra Ogurtsova , Charles Roberts , Daphne Wang , Peter Nguyen , Qingfeng Zhu , Sigfredo Soto-Diaz , Jose Loyola , Inbal B Sander , Pok Fai Wong , Shlomit Jessel , Joshua Doyle , Danielle Signer , Richard Wilton , Jeffrey S Roskes , Margaret Eminizer , Seyoun Park , Joel C Sunshine , Elizabeth M Jaffee , Alexander Baras , Angelo M De Marzo , Suzanne L Topalian , Harriet Kluger , Leslie Cope , Evan J Lipson , Ludmila Danilova , Robert A Anders , David L Rimm , Drew M Pardoll , Janis M Taube

Now Is the Time to Build a National Data Ecosystem for Materials Science and Chemistry Research Data.

ACS omega

Avec: Eva M Campo , Sadasivan Shankar , Robert J Hanisch

Performance optimization in DNA short-read alignment.

Bioinformatics (Oxford, England)

Avec: Richard Wilton ,

Data-Rich Spatial Profiling of Cancer Tissue: Astronomy Informs Pathology.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Janis M Taube

Molecular phenotypes associated with antipsychotic drugs in the human caudate nucleus.

Molecular psychiatry

Avec: Kira A Perzel Mandell , Nicholas J Eagles , Amy Deep-Soboslay , Ran Tao , Shizhong Han , Richard Wilton , Thomas M Hyde , Joel E Kleinman , Andrew E Jaffe , Daniel R Weinberger

Comparing and Correcting Spectral Sensitivities between Multispectral Microscopes: A Prerequisite to Clinical Implementation.

Cancers

Avec: Margaret Eminizer , Melinda Nagy , Elizabeth L Engle , Sigfredo Soto-Diaz , Andrew Jorquera , Jeffrey S Roskes , Benjamin F Green , Richard Wilton , Janis M Taube ,

First Organoid Intelligence (OI) workshop to form an OI community.

Frontiers in artificial intelligence

Avec: Itzy E Morales Pantoja , Lena Smirnova , Alysson R Muotri , Karl J Wahlin , Jeffrey Kahn , J Lomax Boyd , David H Gracias , Timothy D Harris , Tzahi Cohen-Karni , Brian S Caffo , Fang Han , Donald J Zack , Ralph Etienne-Cummings , Akwasi Akwaboah , July Carolina Romero , Dowlette-Mary Alam El Din , Jesse D Plotkin , Barton L Paulhamus , Erik C Johnson , Frederic Gilbert , J Lowry Curley , Ben Cappiello , Jens C Schwamborn , Eric J Hill , Paul Roach , Daniel Tornero , Caroline Krall , Rheinallt Parri , Fenna Sillé , Andre Levchenko , Rabih E Jabbour , Brett J Kagan , Cynthia A Berlinicke , Qi Huang , Alexandra Maertens , Kathrin Herrmann , Katya Tsaioun , Raha Dastgheyb , Christa Whelan Habela , Joshua T Vogelstein , Thomas Hartung

The Terabase Search Engine: a large-scale relational database of short-read sequences.

Bioinformatics (Oxford, England)

Avec: Richard Wilton , Sarah J Wheelan , Steven L Salzberg

Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk.

Nature communications

Avec: Kira A Perzel Mandell , Nicholas J Eagles , Richard Wilton , Amanda J Price , Stephen A Semick , Leonardo Collado-Torres , William S Ulrich , Ran Tao , Shizhong Han , Thomas M Hyde , Joel E Kleinman , Daniel R Weinberger , Andrew E Jaffe

Short-read aligner performance in germline variant identification.

Bioinformatics (Oxford, England)

Avec: Richard Wilton ,

Arioc: High-concurrency short-read alignment on multiple GPUs.

PLoS computational biology

Avec: Richard Wilton ,

Digital Pathology Analysis Quantifies Spatial Heterogeneity of CD3, CD4, CD8, CD20, and FoxP3 Immune Markers in Triple-Negative Breast Cancer.

Frontiers in physiology

Avec: Haoyang Mi , Chang Gong , Jeremias Sulam , Elana J Fertig , Elizabeth M Jaffee , Vered Stearns , Leisha A Emens , Ashley M Cimino-Mathews , Aleksander S Popel

Réseau de co-auteurs

Richard Wilton 8 collaborations

Janis M Taube 3 collaborations

Benjamin F Green 2 collaborations

Elizabeth L Engle 2 collaborations

Sigfredo Soto-Diaz 2 collaborations

Jeffrey S Roskes 2 collaborations

Margaret Eminizer 2 collaborations

Elizabeth M Jaffee 2 collaborations

Kira A Perzel Mandell 2 collaborations

Nicholas J Eagles 2 collaborations

Ran Tao 2 collaborations

Shizhong Han 2 collaborations

Thomas M Hyde 2 collaborations

Joel E Kleinman 2 collaborations

Andrew E Jaffe 2 collaborations

Daniel R Weinberger 2 collaborations

Sneha Berry 1 collaboration

Nicolas A Giraldo 1 collaboration

Tricia R Cottrell 1 collaboration

Julie E Stein 1 collaboration

Haiying Xu 1 collaboration

Aleksandra Ogurtsova 1 collaboration

Charles Roberts 1 collaboration

Daphne Wang 1 collaboration

Peter Nguyen 1 collaboration

Qingfeng Zhu 1 collaboration

Jose Loyola 1 collaboration

Inbal B Sander 1 collaboration

Pok Fai Wong 1 collaboration

Shlomit Jessel 1 collaboration

Joshua Doyle 1 collaboration

Danielle Signer 1 collaboration

Seyoun Park 1 collaboration

Joel C Sunshine 1 collaboration

Alexander Baras 1 collaboration

Angelo M De Marzo 1 collaboration

Suzanne L Topalian 1 collaboration

Harriet Kluger 1 collaboration

Leslie Cope 1 collaboration

Evan J Lipson 1 collaboration

Ludmila Danilova 1 collaboration

Robert A Anders 1 collaboration

David L Rimm 1 collaboration

Drew M Pardoll 1 collaboration

Eva M Campo 1 collaboration

Sadasivan Shankar 1 collaboration

Robert J Hanisch 1 collaboration

Amy Deep-Soboslay 1 collaboration

Melinda Nagy 1 collaboration

Andrew Jorquera 1 collaboration

Itzy E Morales Pantoja 1 collaboration

Lena Smirnova 1 collaboration

Alysson R Muotri 1 collaboration

Karl J Wahlin 1 collaboration

Jeffrey Kahn 1 collaboration

J Lomax Boyd 1 collaboration

David H Gracias 1 collaboration

Timothy D Harris 1 collaboration

Tzahi Cohen-Karni 1 collaboration

Brian S Caffo 1 collaboration

Fang Han 1 collaboration

Donald J Zack 1 collaboration

Ralph Etienne-Cummings 1 collaboration

Akwasi Akwaboah 1 collaboration

July Carolina Romero 1 collaboration

Dowlette-Mary Alam El Din 1 collaboration

Jesse D Plotkin 1 collaboration

Barton L Paulhamus 1 collaboration

Erik C Johnson 1 collaboration

Frederic Gilbert 1 collaboration

J Lowry Curley 1 collaboration

Ben Cappiello 1 collaboration

Jens C Schwamborn 1 collaboration

Eric J Hill 1 collaboration

Paul Roach 1 collaboration

Daniel Tornero 1 collaboration

Caroline Krall 1 collaboration

Rheinallt Parri 1 collaboration

Fenna Sillé 1 collaboration

Andre Levchenko 1 collaboration

Rabih E Jabbour 1 collaboration

Brett J Kagan 1 collaboration

Cynthia A Berlinicke 1 collaboration

Qi Huang 1 collaboration

Alexandra Maertens 1 collaboration

Kathrin Herrmann 1 collaboration

Katya Tsaioun 1 collaboration

Raha Dastgheyb 1 collaboration

Christa Whelan Habela 1 collaboration

Joshua T Vogelstein 1 collaboration

Thomas Hartung 1 collaboration

Sarah J Wheelan 1 collaboration

Steven L Salzberg 1 collaboration

Amanda J Price 1 collaboration

Stephen A Semick 1 collaboration

Leonardo Collado-Torres 1 collaboration

William S Ulrich 1 collaboration

Haoyang Mi 1 collaboration

Chang Gong 1 collaboration

Jeremias Sulam 1 collaboration

Elana J Fertig 1 collaboration

Vered Stearns 1 collaboration

Leisha A Emens 1 collaboration

Ashley M Cimino-Mathews 1 collaboration

Aleksander S Popel 1 collaboration