Alan Partin

Publications (16)

Assessment of high-grade prostate cancer risk using prostate cancer biomarkers.

The Canadian journal of urology

Avec: Whitney N Stanton , E David Crawford , Paul B Arangua , Francisco G La Rosa , Adrie van Bokhoven , M Scott Lucia , Wendy L Poage , Paul Maroni , Priya N Werahera

AI-accelerated protein-ligand docking for SARS-CoV-2 is 100-fold faster with no significant change in detection.

Scientific reports

Avec: Austin Clyde , Xuefeng Liu , Thomas Brettin , Hyunseung Yoo , Alexander Partin , Yadu Babuji , Ben Blaiszik , Jamaludin Mohd-Yusof , Andre Merzky , Matteo Turilli , Shantenu Jha , Arvind Ramanathan , Rick Stevens

Deep learning methods for drug response prediction in cancer: Predominant and emerging trends.

Frontiers in medicine

Avec: Alexander Partin , Thomas S Brettin , Yitan Zhu , Oleksandr Narykov , Austin Clyde , Jamie Overbeek , Rick L Stevens

A modified Delphi study to develop a practical guide for selecting patients with prostate cancer for active surveillance.

BMC urology

Avec: Samuel W D Merriel , Daniel Moon , Phil Dundee , Niall Corcoran , Peter Carroll , Joseph A Smith , Freddie Hamdy , Caroline Moore , Piet Ost , Tony Costello

Angiotensin receptor autoantibodies as exposures that modify disease progression: Cross sectional, longitudinal and

Journal of translational autoimmunity

Avec: Alka Jain , Haikoo Shah , Eleanor M Simonsick , E Jeffrey Metter , Leslie Mangold , Elizabeth Humphreys , Neal S Fedarko

Behavior in Free-Living American Black Bear Dens: Parturition, Maternal Care, and Cub Behavior.

Animals : an open access journal from MDPI

Avec: Lynn L Rogers , Linda McColley , Janet Dalton , Jim Stroner , Douglas Hajicek , Adam Partin , Gordon M Burghardt

Predicting high-grade prostate cancer at initial biopsy: clinical performance of the ExoDx (EPI) Prostate Intelliscore test in three independent prospective studies.

Prostate cancer and prostatic diseases

Avec: Erik Margolis , Gordon Brown , Ballentine Carter , James McKiernan , Ronald Tutrone , Phillipp Torkler , Christian Fischer , Vasisht Tadigotla , Mikkel Noerholm , Michael J Donovan , Johan Skog

Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers.

Interface focus

Avec: Agastya P Bhati , Shunzhou Wan , Dario Alfè , Austin R Clyde , Mathis Bode , Li Tan , Mikhail Titov , Andre Merzky , Matteo Turilli , Shantenu Jha , Roger R Highfield , Walter Rocchia , Nicola Scafuri , Sauro Succi , Dieter Kranzlmüller , Gerald Mathias , David Wifling , Yann Donon , Alberto Di Meglio , Sofia Vallecorsa , Heng Ma , Anda Trifan , Arvind Ramanathan , Tom Brettin , Alexander Partin , Fangfang Xia , Xiaotan Duan , Rick Stevens , Peter V Coveney

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models.

Genes

Avec: Yitan Zhu , Thomas Brettin , Yvonne A Evrard , Fangfang Xia , Alexander Partin , Maulik Shukla , Hyunseung Yoo , James H Doroshow , Rick L Stevens

Clinical validation of IsoPSA, a single parameter, structure-focused assay for improved detection of prostate cancer: A prospective, multicenter study.

Urologic oncology

Avec: Eric A Klein , Yair Lotan , Jack Baniel , Martin Dineen , Jason Hafron , Kannan Manickam , Marc Pliskin , Matthew Wagner , Aimee Kestranek , Mark Stovsky

IsoPSA Performance Characteristics are Unaffected by 5-Alpha Reductase Inhibitors or Alpha-Blockers: Results From the IsoPSA Validation Study.

Urology

Avec: Jason M Scovell , Mark Stovsky , Yair Lotan , Jack Baniel , Martin Dineen , Jason Hafron , Kannan Manickam , Marc Pliskin , Matthew Wagner , Aimee Kestranek , Eric A Klein

Benchmarking SARS CoV-2 Infection in the Workplace to Support Continuity of Operations.

Journal of occupational and environmental medicine

Avec: Bart O Iddins , Mark H Waugh , Brandon Buck , Tracey Cato , David E Graham , Kareem Attia , Dan Jones , Adam Partin , Rania Shourbaji , Christopher Wesh

Converting tabular data into images for deep learning with convolutional neural networks.

Scientific reports

Avec: Yitan Zhu , Thomas Brettin , Fangfang Xia , Alexander Partin , Maulik Shukla , Hyunseung Yoo , Yvonne A Evrard , James H Doroshow , Rick L Stevens

Learning curves for drug response prediction in cancer cell lines.

BMC bioinformatics

Avec: Alexander Partin , Thomas Brettin , Yvonne A Evrard , Yitan Zhu , Hyunseung Yoo , Fangfang Xia , Songhao Jiang , Austin Clyde , Maulik Shukla , Michael Fonstein , James H Doroshow , Rick L Stevens

Clinical Validation of IsoPSA™, a Single Parameter, Structure Based Assay for Improved Detection of High Grade Prostate Cancer.

The Journal of urology

Avec: Mark Stovsky , Eric A Klein , Arnon Chait , Kannan Manickam , Andrew J Stephenson , Mathew Wagner , Martin Dineen , Yair Lotan , Jack Baniel , Aimee Kestranek , Prasad Gawande , Boris Zaslavsky

Ensemble transfer learning for the prediction of anti-cancer drug response.

Scientific reports

Avec: Yitan Zhu , Thomas Brettin , Yvonne A Evrard , Alexander Partin , Fangfang Xia , Maulik Shukla , Hyunseung Yoo , James H Doroshow , Rick L Stevens

Réseau de co-auteurs

Alexander Partin 7 collaborations

Thomas Brettin 5 collaborations

Hyunseung Yoo 5 collaborations

Yitan Zhu 5 collaborations

Rick L Stevens 5 collaborations

Fangfang Xia 5 collaborations

Yvonne A Evrard 4 collaborations

Maulik Shukla 4 collaborations

James H Doroshow 4 collaborations

Austin Clyde 3 collaborations

Eric A Klein 3 collaborations

Yair Lotan 3 collaborations

Jack Baniel 3 collaborations

Martin Dineen 3 collaborations

Kannan Manickam 3 collaborations

Aimee Kestranek 3 collaborations

Mark Stovsky 3 collaborations

Andre Merzky 2 collaborations

Matteo Turilli 2 collaborations

Shantenu Jha 2 collaborations

Arvind Ramanathan 2 collaborations

Rick Stevens 2 collaborations

Adam Partin 2 collaborations

Jason Hafron 2 collaborations

Marc Pliskin 2 collaborations

Matthew Wagner 2 collaborations

Whitney N Stanton 1 collaboration

E David Crawford 1 collaboration

Paul B Arangua 1 collaboration

Francisco G La Rosa 1 collaboration

Adrie van Bokhoven 1 collaboration

M Scott Lucia 1 collaboration

Wendy L Poage 1 collaboration

Paul Maroni 1 collaboration

Priya N Werahera 1 collaboration

Xuefeng Liu 1 collaboration

Yadu Babuji 1 collaboration

Ben Blaiszik 1 collaboration

Jamaludin Mohd-Yusof 1 collaboration

Thomas S Brettin 1 collaboration

Oleksandr Narykov 1 collaboration

Jamie Overbeek 1 collaboration

Samuel W D Merriel 1 collaboration

Daniel Moon 1 collaboration

Phil Dundee 1 collaboration

Niall Corcoran 1 collaboration

Peter Carroll 1 collaboration

Joseph A Smith 1 collaboration

Freddie Hamdy 1 collaboration

Caroline Moore 1 collaboration

Piet Ost 1 collaboration

Tony Costello 1 collaboration

Alka Jain 1 collaboration

Haikoo Shah 1 collaboration

Eleanor M Simonsick 1 collaboration

E Jeffrey Metter 1 collaboration

Leslie Mangold 1 collaboration

Elizabeth Humphreys 1 collaboration

Neal S Fedarko 1 collaboration

Lynn L Rogers 1 collaboration

Linda McColley 1 collaboration

Janet Dalton 1 collaboration

Jim Stroner 1 collaboration

Douglas Hajicek 1 collaboration

Gordon M Burghardt 1 collaboration

Erik Margolis 1 collaboration

Gordon Brown 1 collaboration

Ballentine Carter 1 collaboration

James McKiernan 1 collaboration

Ronald Tutrone 1 collaboration

Phillipp Torkler 1 collaboration

Christian Fischer 1 collaboration

Vasisht Tadigotla 1 collaboration

Mikkel Noerholm 1 collaboration

Michael J Donovan 1 collaboration

Johan Skog 1 collaboration

Agastya P Bhati 1 collaboration

Shunzhou Wan 1 collaboration

Dario Alfè 1 collaboration

Austin R Clyde 1 collaboration

Mathis Bode 1 collaboration

Li Tan 1 collaboration

Mikhail Titov 1 collaboration

Roger R Highfield 1 collaboration

Walter Rocchia 1 collaboration

Nicola Scafuri 1 collaboration

Sauro Succi 1 collaboration

Dieter Kranzlmüller 1 collaboration

Gerald Mathias 1 collaboration

David Wifling 1 collaboration

Yann Donon 1 collaboration

Alberto Di Meglio 1 collaboration

Sofia Vallecorsa 1 collaboration

Heng Ma 1 collaboration

Anda Trifan 1 collaboration

Tom Brettin 1 collaboration

Xiaotan Duan 1 collaboration

Peter V Coveney 1 collaboration

Jason M Scovell 1 collaboration

Bart O Iddins 1 collaboration

Mark H Waugh 1 collaboration

Brandon Buck 1 collaboration

Tracey Cato 1 collaboration

David E Graham 1 collaboration

Kareem Attia 1 collaboration

Dan Jones 1 collaboration

Rania Shourbaji 1 collaboration

Christopher Wesh 1 collaboration

Songhao Jiang 1 collaboration

Michael Fonstein 1 collaboration

Arnon Chait 1 collaboration

Andrew J Stephenson 1 collaboration

Mathew Wagner 1 collaboration

Prasad Gawande 1 collaboration

None Boris Zaslavsky 1 collaboration