Alan E Yocca

Affiliations

Department of Plant Biology, Michigan State University, East Lansing, MI, USA.
Department of Horticulture, Michigan State University, East Lansing, MI, USA.

ORCID: 0000-0002-0974-364X

Publications (15)

Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana.

Molecular biology and evolution

Avec: Zefu Lu , Robert J Schmitz , Michael Freeling , Patrick P Edger

Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts.

Horticulture research

Avec: Adrian Platts , Elizabeth Alger , Scott Teresi , Molla F Mengist , Juliana Benevenuto , Luis Felipe V Ferrão , MacKenzie Jacobs , Michal Babinski , Maria Magallanes-Lundback , Philipp Bayer , Agnieszka Golicz , Jodi L Humann , Dorrie Main , Richard V Espley , David Chagné , Nick W Albert , Sara Montanari , Nicholi Vorsa , James Polashock , Luis Díaz-Garcia , Juan Zalapa , Nahla V Bassil , Patricio R Munoz , Massimo Iorizzo , Patrick P Edger

Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory.

Nature communications

Avec: Abigail E Bryson , Emily R Lanier , Kin H Lau , John P Hamilton , Brieanne Vaillancourt , Davis Mathieu , Garret P Miller , Patrick P Edger , C Robin Buell , Björn Hamberger

Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit.

Plant physiology

Avec: Nick W Albert , Massimo Iorizzo , Molla F Mengist , Sara Montanari , Juan Zalapa , Andrew Maule , Patrick P Edger , Adrian E Platts , Boas Pucker , Richard V Espley

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff.

Nature communications

Avec: Robert VanBuren , Ching Man Wai , Xuewen Wang , Jeremy Pardo , Hao Wang , Srinivasa R Chaluvadi , Guomin Han , Douglas Bryant , Patrick P Edger , Joachim Messing , Mark E Sorrells , Todd C Mockler , Jeffrey L Bennetzen , Todd P Michael

Disease Resistance Genetics and Genomics in Octoploid Strawberry.

G3 (Bethesda, Md.)

Avec: Christopher R Barbey , Seonghee Lee , Sujeet Verma , Kevin A Bird , Patrick P Edger , Steven J Knapp , Vance M Whitaker , Kevin M Folta

Origin and evolution of the octoploid strawberry genome.

Nature genetics

Avec: Patrick P Edger , Thomas J Poorten , Robert VanBuren , Michael A Hardigan , Marivi Colle , Michael R McKain , Ronald D Smith , Scott J Teresi , Andrew D L Nelson , Ching Man Wai , Elizabeth I Alger , Kevin A Bird , Nathan Pumplin , Shujun Ou , Gil Ben-Zvi , Avital Brodt , Kobi Baruch , Thomas Swale , Lily Shiue , Charlotte B Acharya , Glenn S Cole , Jeffrey P Mower , Kevin L Childs , Ning Jiang , Eric Lyons , Michael Freeling , Joshua R Puzey , Steven J Knapp

Evolutionary history and pan-genome dynamics of strawberry (

Proceedings of the National Academy of Sciences of the United States of America

Avec: Qin Qiao , Patrick P Edger , Li Xue , La Qiong , Jie Lu , Yichen Zhang , Qiang Cao , Adrian E Platts , Steven J Knapp , Marc Van Montagu , Yves Van de Peer , Jiajun Lei , Ticao Zhang

Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts.

bioRxiv : the preprint server for biology

A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'.

G3 (Bethesda, Md.)

Avec: Huiting Zhang , Itsuhiro Ko , Abigail Eaker , Sabrina Haney , Ninh Khuu , Kara Ryan , Aaron B Appleby , Brendan Hoffmann , Henry Landis , Kenneth A Pierro , Noah Willsea , Heidi Hargarten , Alex Harkess , Loren Honaas , Stephen Ficklin

Author Correction: Origin and evolution of the octoploid strawberry genome.

Nature genetics

Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry.

GigaScience

Avec: Marivi Colle , Courtney P Leisner , Ching Man Wai , Shujun Ou , Kevin A Bird , Jie Wang , Jennifer H Wisecaver , Elizabeth I Alger , Haibao Tang , Zhiyong Xiong , Pete Callow , Gil Ben-Zvi , Avital Brodt , Kobi Baruch , Thomas Swale , Lily Shiue , Guo-Qing Song , Kevin L Childs , Anthony Schilmiller , Nicholi Vorsa , C Robin Buell , Robert VanBuren , Ning Jiang , Patrick P Edger

Current status and future perspectives on the evolution of cis-regulatory elements in plants.

Current opinion in plant biology

Avec: Patrick P Edger

Machine learning approaches to identify core and dispensable genes in pangenomes.

The plant genome

Avec: Patrick P Edger

There and back again; historical perspective and future directions for

Horticulture research

Avec: Patrick P Edger , Massimo Iorizzo , Nahla V Bassil , Juliana Benevenuto , Luis Felipe V Ferrão , Lara Giongo , Kim Hummer , Lovely Mae F Lawas , Courtney P Leisner , Changying Li , Patricio R Munoz , Hamid Ashrafi , Amaya Atucha , Ebrahiem M Babiker , Elizabeth Canales , David Chagné , Lisa DeVetter , Mark Ehlenfeldt , Richard V Espley , Karina Gallardo , Catrin S Günther , Michael Hardigan , Amanda M Hulse-Kemp , MacKenzie Jacobs , Mary Ann Lila , Claire Luby , Dorrie Main , Molla F Mengist , Gregory L Owens , Penelope Perkins-Veazie , James Polashock , Marti Pottorff , Lisa J Rowland , Charles A Sims , Guo-Qing Song , Jessica Spencer , Nicholi Vorsa , Juan Zalapa

Réseau de co-auteurs

Patrick P Edger 14 collaborations

Molla F Mengist 4 collaborations

Richard V Espley 4 collaborations

Nicholi Vorsa 4 collaborations

Juan Zalapa 4 collaborations

Massimo Iorizzo 4 collaborations

Robert VanBuren 4 collaborations

Ching Man Wai 4 collaborations

Kevin A Bird 4 collaborations

Steven J Knapp 4 collaborations

Michael Freeling 3 collaborations

Juliana Benevenuto 3 collaborations

Luis Felipe V Ferrão 3 collaborations

MacKenzie Jacobs 3 collaborations

Dorrie Main 3 collaborations

David Chagné 3 collaborations

Nick W Albert 3 collaborations

Sara Montanari 3 collaborations

James Polashock 3 collaborations

Nahla V Bassil 3 collaborations

Patricio R Munoz 3 collaborations

Marivi Colle 3 collaborations

Elizabeth I Alger 3 collaborations

Shujun Ou 3 collaborations

Gil Ben-Zvi 3 collaborations

Avital Brodt 3 collaborations

Kobi Baruch 3 collaborations

Thomas Swale 3 collaborations

Lily Shiue 3 collaborations

Kevin L Childs 3 collaborations

Ning Jiang 3 collaborations

Adrian Platts 2 collaborations

Elizabeth Alger 2 collaborations

Scott Teresi 2 collaborations

Michal Babinski 2 collaborations

Maria Magallanes-Lundback 2 collaborations

Philipp Bayer 2 collaborations

Agnieszka Golicz 2 collaborations

Jodi L Humann 2 collaborations

Luis Díaz-Garcia 2 collaborations

C Robin Buell 2 collaborations

Adrian E Platts 2 collaborations

Thomas J Poorten 2 collaborations

Michael A Hardigan 2 collaborations

Michael R McKain 2 collaborations

Ronald D Smith 2 collaborations

Scott J Teresi 2 collaborations

Andrew D L Nelson 2 collaborations

Nathan Pumplin 2 collaborations

Charlotte B Acharya 2 collaborations

Glenn S Cole 2 collaborations

Jeffrey P Mower 2 collaborations

Eric Lyons 2 collaborations

Joshua R Puzey 2 collaborations

Courtney P Leisner 2 collaborations

Guo-Qing Song 2 collaborations

Zefu Lu 1 collaboration

Robert J Schmitz 1 collaboration

Abigail E Bryson 1 collaboration

Emily R Lanier 1 collaboration

Kin H Lau 1 collaboration

John P Hamilton 1 collaboration

Brieanne Vaillancourt 1 collaboration

Davis Mathieu 1 collaboration

Garret P Miller 1 collaboration

Björn Hamberger 1 collaboration

Andrew Maule 1 collaboration

Boas Pucker 1 collaboration

Xuewen Wang 1 collaboration

Jeremy Pardo 1 collaboration

Hao Wang 1 collaboration

Srinivasa R Chaluvadi 1 collaboration

Guomin Han 1 collaboration

Douglas Bryant 1 collaboration

Joachim Messing 1 collaboration

Mark E Sorrells 1 collaboration

Todd C Mockler 1 collaboration

Jeffrey L Bennetzen 1 collaboration

Todd P Michael 1 collaboration

Christopher R Barbey 1 collaboration

Seonghee Lee 1 collaboration

Sujeet Verma 1 collaboration

Vance M Whitaker 1 collaboration

Kevin M Folta 1 collaboration

Qin Qiao 1 collaboration

Li Xue 1 collaboration

La Qiong 1 collaboration

Jie Lu 1 collaboration

Yichen Zhang 1 collaboration

Qiang Cao 1 collaboration

Marc Van Montagu 1 collaboration

Yves Van de Peer 1 collaboration

Jiajun Lei 1 collaboration

Ticao Zhang 1 collaboration

Huiting Zhang 1 collaboration

Itsuhiro Ko 1 collaboration

Abigail Eaker 1 collaboration

Sabrina Haney 1 collaboration

Ninh Khuu 1 collaboration

Kara Ryan 1 collaboration

Aaron B Appleby 1 collaboration

Brendan Hoffmann 1 collaboration

Henry Landis 1 collaboration

Kenneth A Pierro 1 collaboration

Noah Willsea 1 collaboration

Heidi Hargarten 1 collaboration

Alex Harkess 1 collaboration

Loren Honaas 1 collaboration

Stephen Ficklin 1 collaboration

Jie Wang 1 collaboration

Jennifer H Wisecaver 1 collaboration

Haibao Tang 1 collaboration

Zhiyong Xiong 1 collaboration

Pete Callow 1 collaboration

Anthony Schilmiller 1 collaboration

Lara Giongo 1 collaboration

Kim Hummer 1 collaboration

Lovely Mae F Lawas 1 collaboration

Changying Li 1 collaboration

Hamid Ashrafi 1 collaboration

Amaya Atucha 1 collaboration

Ebrahiem M Babiker 1 collaboration

Elizabeth Canales 1 collaboration

Lisa DeVetter 1 collaboration

Mark Ehlenfeldt 1 collaboration

Karina Gallardo 1 collaboration

Catrin S Günther 1 collaboration

Michael Hardigan 1 collaboration

Amanda M Hulse-Kemp 1 collaboration

Mary Ann Lila 1 collaboration

Claire Luby 1 collaboration

Gregory L Owens 1 collaboration

Penelope Perkins-Veazie 1 collaboration

Marti Pottorff 1 collaboration

Lisa J Rowland 1 collaboration

Charles A Sims 1 collaboration

Jessica Spencer 1 collaboration