Age K Smilde

Affiliations

Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.

Publications (25)

Principal component analysis of binary genomics data.

Briefings in bioinformatics

Avec: Yipeng Song , Johan A Westerhuis , Nanne Aben , Magali Michaut , Lodewyk F A Wessels ,

A strategy for differential abundance analysis of sparse microbiome data with group-wise structured zeros.

Scientific reports

Avec: Fentaw Abegaz , Davar Abedini , Fred White , Alessandra Guerrieri , Anouk Zancarini , Lemeng Dong , Johan A Westerhuis , Fred van Eeuwijk , Harro Bouwmeester ,

Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles.

Microorganisms

Avec: Josué L Castro-Mejía , Bekzod Khakimov , Violetta Aru , Mads V Lind , Eva Garne , Petronela Paulová , Elnaz Tavakkoli , Lars H Hansen , Lars Holm , Søren B Engelsen , Dennis S Nielsen

Repeatability and reproducibility of lipoprotein particle profile measurements in plasma samples by ultracentrifugation.

Clinical chemistry and laboratory medicine

Avec: Sandra Monsonis-Centelles , Huub C J Hoefsloot , Søren B Engelsen , Mads V Lind

Common and distinct variation in data fusion of designed experimental data.

Metabolomics : Official journal of the Metabolomic Society

Avec: Masoumeh Alinaghi , Hanne Christine Bertram , Anders Brunse , Johan A Westerhuis

Numerical Representations of Metabolic Systems.

Analytical chemistry

Avec: Thomas Hankemeier

Integration of omics data to unravel root microbiome recruitment.

Current opinion in biotechnology

Avec: Anouk Zancarini , Johan A Westerhuis , Harro J Bouwmeester

Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA.

PLoS computational biology

Avec: Balázs Erdős , Johan A Westerhuis , Michiel E Adriaens , Shauna D O'Donovan , Ren Xie , Cécile M Singh-Povel , Ilja C W Arts

Analyzing postprandial metabolomics data using multiway models: a simulation study.

BMC bioinformatics

Avec: Lu Li , Shi Yan , Barbara M Bakker , Huub Hoefsloot , Bo Chawes , David Horner , Morten A Rasmussen , Evrim Acar

Systematic selection of competing metabolomics methods in a metabolite-sensory relationship study.

Metabolomics : Official journal of the Metabolomic Society

Avec: Naser Davarzani , Carmen Diez-Simon , Justus L Großmann , Doris M Jacobs , Rudi van Doorn , Marco A van den Berg , Roland Mumm , Robert D Hall , Johan A Westerhuis

Orthogonality constrained inverse regression to improve model selectivity and analyte predictions from vibrational spectroscopic measurements.

Analytica chimica acta

Avec: Peter B Skou , Ensie Hosseini , Jahan B Ghasemi , Carl Emil Eskildsen

Revealing static and dynamic biomarkers from postprandial metabolomics data through coupled matrix and tensor factorizations.

Metabolomics : Official journal of the Metabolomic Society

Avec: Lu Li , Shi Yan , David Horner , Morten A Rasmussen , Evrim Acar

Choosing proper normalization is essential for discovery of sparse glycan biomarkers.

Molecular omics

Avec: Hae-Won Uh , Lucija Klarić , Ivo Ugrina , Gordan Lauc , Jeanine J Houwing-Duistermaat

Unraveling VEALYL Amyloid Formation Using Advanced Vibrational Spectroscopy and Microscopy.

Biophysical journal

Avec: Steven J Roeters , Mathias Sawall , Carl E Eskildsen , Matthijs R Panman , Gergely Tordai , Mike Koeman , Klaus Neymeyr , Jeroen Jansen , Sander Woutersen

Modeling adaptive response profiles in a vaccine clinical trial.

BMC medical research methodology

Avec: Dicle Hasdemir , Robert A van den Berg , Antoine van Kampen ,

Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data.

PLoS computational biology

Avec: Torfinn S Madssen , Guro F Giskeødegård , Johan A Westerhuis

Novel Connections of Common Childhood Illnesses Based on More Than 5 Million Diary Registrations From Birth Until Age 3 Years.

The journal of allergy and clinical immunology. In practice

Avec: Sarah Kristine Nørgaard , Nilo Følsgaard , Nadja Hawwa Vissing , Julie Nyholm Kyvsgaard , Bo Chawes , Jakob Stokholm , Klaus Bønnelykke , Hans Bisgaard , Morten Arendt Rasmussen

Characterizing human postprandial metabolic response using multiway data analysis.

Metabolomics : Official journal of the Metabolomic Society

Avec: Shi Yan , Lu Li , David Horner , Parvaneh Ebrahimi , Bo Chawes , Lars O Dragsted , Morten A Rasmussen , Evrim Acar

Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis.

NPJ biofilms and microbiomes

Avec: G R van der Ploeg , B W Brandt , B J F Keijser , M H van der Veen , C M C Volgenant , E Zaura , A K Smilde , J A Westerhuis , A Heintz-Buschart

Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models.

Scientific reports

Avec: Edoardo Saccenti , Margriet H W B Hendriks ,

Increased comparability between RNA-Seq and microarray data by utilization of gene sets.

PLoS computational biology

Avec: Frans M van der Kloet , Jeroen Buurmans , Martijs J Jonker , Johan A Westerhuis

Human Blood Lipoprotein Predictions from

Analytical chemistry

Avec: Bekzod Khakimov , Huub C J Hoefsloot , Nabiollah Mobaraki , Violetta Aru , Mette Kristensen , Mads V Lind , Lars Holm , Josué L Castro-Mejía , Dennis S Nielsen , Doris M Jacobs , Søren Balling Engelsen

Effect of strigolactones on recruitment of the rice root-associated microbiome.

FEMS microbiology ecology

Avec: Bora Kim , Johan A Westerhuis , Kristýna Floková , Afnan K A Suleiman , Eiko E Kuramae , Harro J Bouwmeester , Anouk Zancarini

Exploring dynamic metabolomics data with multiway data analysis: a simulation study.

BMC bioinformatics

Avec: Lu Li , Huub Hoefsloot , Albert A de Graaf , Evrim Acar ,

Flavor Profiling Using Comprehensive Mass Spectrometry Analysis of Metabolites in Tomato Soups.

Metabolites

Avec: Simon Leygeber , Justus L Grossmann , Carmen Diez-Simon , Naama Karu , Anne-Charlotte Dubbelman , Amy C Harms , Johan A Westerhuis , Doris M Jacobs , Peter W Lindenburg , Margriet M W B Hendriks , Brenda C H Ammerlaan , Marco A van den Berg , Rudi van Doorn , Roland Mumm , Robert D Hall , Thomas Hankemeier

Réseau de co-auteurs

Johan A Westerhuis 10 collaborations

Lu Li 4 collaborations

Evrim Acar 4 collaborations

Anouk Zancarini 3 collaborations

Mads V Lind 3 collaborations

Shi Yan 3 collaborations

Bo Chawes 3 collaborations

David Horner 3 collaborations

Morten A Rasmussen 3 collaborations

Doris M Jacobs 3 collaborations

Josué L Castro-Mejía 2 collaborations

Bekzod Khakimov 2 collaborations

Violetta Aru 2 collaborations

Lars Holm 2 collaborations

Søren B Engelsen 2 collaborations

Dennis S Nielsen 2 collaborations

Huub C J Hoefsloot 2 collaborations

Thomas Hankemeier 2 collaborations

Harro J Bouwmeester 2 collaborations

Huub Hoefsloot 2 collaborations

Carmen Diez-Simon 2 collaborations

Rudi van Doorn 2 collaborations

Marco A van den Berg 2 collaborations

Roland Mumm 2 collaborations

Robert D Hall 2 collaborations

Yipeng Song 1 collaboration

Nanne Aben 1 collaboration

Magali Michaut 1 collaboration

Lodewyk F A Wessels 1 collaboration

Fentaw Abegaz 1 collaboration

Davar Abedini 1 collaboration

Fred White 1 collaboration

Alessandra Guerrieri 1 collaboration

Lemeng Dong 1 collaboration

Fred van Eeuwijk 1 collaboration

Harro Bouwmeester 1 collaboration

Eva Garne 1 collaboration

Petronela Paulová 1 collaboration

Elnaz Tavakkoli 1 collaboration

Lars H Hansen 1 collaboration

Sandra Monsonis-Centelles 1 collaboration

Masoumeh Alinaghi 1 collaboration

Hanne Christine Bertram 1 collaboration

Anders Brunse 1 collaboration

Balázs Erdős 1 collaboration

Michiel E Adriaens 1 collaboration

Shauna D O'Donovan 1 collaboration

Ren Xie 1 collaboration

Cécile M Singh-Povel 1 collaboration

Ilja C W Arts 1 collaboration

Barbara M Bakker 1 collaboration

Naser Davarzani 1 collaboration

Justus L Großmann 1 collaboration

Peter B Skou 1 collaboration

Ensie Hosseini 1 collaboration

Jahan B Ghasemi 1 collaboration

Carl Emil Eskildsen 1 collaboration

Hae-Won Uh 1 collaboration

Lucija Klarić 1 collaboration

Ivo Ugrina 1 collaboration

Gordan Lauc 1 collaboration

Jeanine J Houwing-Duistermaat 1 collaboration

Steven J Roeters 1 collaboration

Mathias Sawall 1 collaboration

Carl E Eskildsen 1 collaboration

Matthijs R Panman 1 collaboration

Gergely Tordai 1 collaboration

Mike Koeman 1 collaboration

Klaus Neymeyr 1 collaboration

Jeroen Jansen 1 collaboration

Sander Woutersen 1 collaboration

Dicle Hasdemir 1 collaboration

Robert A van den Berg 1 collaboration

Antoine van Kampen 1 collaboration

Torfinn S Madssen 1 collaboration

Guro F Giskeødegård 1 collaboration

Sarah Kristine Nørgaard 1 collaboration

Nilo Følsgaard 1 collaboration

Nadja Hawwa Vissing 1 collaboration

Julie Nyholm Kyvsgaard 1 collaboration

Jakob Stokholm 1 collaboration

Klaus Bønnelykke 1 collaboration

Hans Bisgaard 1 collaboration

Morten Arendt Rasmussen 1 collaboration

Parvaneh Ebrahimi 1 collaboration

Lars O Dragsted 1 collaboration

G R van der Ploeg 1 collaboration

B W Brandt 1 collaboration

B J F Keijser 1 collaboration

M H van der Veen 1 collaboration

C M C Volgenant 1 collaboration

E Zaura 1 collaboration

A K Smilde 1 collaboration

J A Westerhuis 1 collaboration

A Heintz-Buschart 1 collaboration

Edoardo Saccenti 1 collaboration

Margriet H W B Hendriks 1 collaboration

Frans M van der Kloet 1 collaboration

Jeroen Buurmans 1 collaboration

Martijs J Jonker 1 collaboration

Nabiollah Mobaraki 1 collaboration

Mette Kristensen 1 collaboration

Søren Balling Engelsen 1 collaboration

Bora Kim 1 collaboration

Kristýna Floková 1 collaboration

Afnan K A Suleiman 1 collaboration

Eiko E Kuramae 1 collaboration

Albert A de Graaf 1 collaboration

Simon Leygeber 1 collaboration

Justus L Grossmann 1 collaboration

Naama Karu 1 collaboration

Anne-Charlotte Dubbelman 1 collaboration

Amy C Harms 1 collaboration

Peter W Lindenburg 1 collaboration

Margriet M W B Hendriks 1 collaboration

Brenda C H Ammerlaan 1 collaboration