Actionability and familial uptake following opportunistic genomic screening in a pediatric cancer cohort.


Journal

European journal of human genetics : EJHG
ISSN: 1476-5438
Titre abrégé: Eur J Hum Genet
Pays: England
ID NLM: 9302235

Informations de publication

Date de publication:
13 May 2024
Historique:
received: 04 07 2023
accepted: 18 04 2024
revised: 02 04 2024
medline: 14 5 2024
pubmed: 14 5 2024
entrez: 13 5 2024
Statut: aheadofprint

Résumé

The care for patients with serious conditions is increasingly guided by genomic medicine, and genomic medicine may equally transform care for healthy individual if genomic population screening is implemented. This study examines the medical impact of opportunistic genomic screening (OGS) in a cohort of patients undergoing comprehensive genomic germline DNA testing for childhood cancer, including the impact on their relatives. Medical actionability and uptake after cascade testing in the period following disclosure of OGS results was quantified. A secondary finding was reported to 19/595 (3.2%) probands primarily in genes related to cardiovascular and lipid disorders. After a mean follow up time of 1.6 years (Interquartile range (IQR): 0.57-1.92 yrs.) only 12 (63%) of these variants were found to be medically actionable. Clinical follow up or treatment was planned in 16 relatives, and as in the probands, the prescribed treatment was primarily betablockers or cholesterol lowering therapy. No invasive procedures or implantation of medical devices were performed in probands or relatives, and no reproductive counseling was requested. After an average of 1.6 years of follow-up 2.25 relatives per family with an actionable finding had been tested. This real-world experience of OGS grants new insight into the practical implementation effects and derived health care demands of genotype-first screening. The resulting health care effect and impact on demand for genetic counseling and workup in relatives extends beyond the effect in the probands.

Identifiants

pubmed: 38740897
doi: 10.1038/s41431-024-01618-7
pii: 10.1038/s41431-024-01618-7
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2024. The Author(s).

Références

Green RC, Berg JS, Grody WW, Kalia SS, Korf BR, Martin CL, et al. American College of Medical Genetics and Genomics ACMG Recommendations for Reporting of Incidental Findings in Clinical Exome and Genome Sequencing. Genet Med. 2013;15:565–74.
doi: 10.1038/gim.2013.73 pubmed: 23788249 pmcid: 3727274
Kalia SS, Adelman K, Bale SJ, Chung WK, Eng C, Evans JP, et al. Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): A policy statement of the American College of Medical Genetics and Genomics. Genet Med. 2017;19:249–55.
doi: 10.1038/gim.2016.190 pubmed: 27854360
Miller DT, Lee K, Abul-Husn NS, Amendola LM, Brothers K, Chung WK, et al. ACMG SF v3.1 list for reporting of secondary findings in clinical exome and genome sequencing: A policy statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med. 2022;24:1407–14.
doi: 10.1016/j.gim.2022.04.006 pubmed: 35802134
Miller DT, Lee K, Chung WK, Gordon AS, Herman GE, Klein TE, et al. ACMG SF v3.0 list for reporting of secondary findings in clinical exome and genome sequencing: a policy statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med. 2021;23:1381–90.
doi: 10.1038/s41436-021-01172-3 pubmed: 34012068
Amendola LM, Dorschner MO, Robertson PD, Salama JS, Hart R, Shirts BH, et al. Actionable exomic incidental findings in 6503 participants: Challenges of variant classification. Genome Res. 2015;25:305–15.
doi: 10.1101/gr.183483.114 pubmed: 25637381 pmcid: 4352885
Dorschner MO, Amendola LM, Turner EH, Robertson PD, Shirts BH, Gallego CJ, et al. Actionable, pathogenic incidental findings in 1,000 participants’ exomes. Am J Hum Genet. 2013;93:631–40.
doi: 10.1016/j.ajhg.2013.08.006 pubmed: 24055113 pmcid: 3791261
Hart MR, Biesecker BB, Blout CL, Christensen KD, Amendola LM, Bergstrom KL, et al. Secondary findings from clinical genomic sequencing: prevalence, patient perspectives, family history assessment, and health-care costs from a multisite study. Genet Med. 2019;21:1100–10.
doi: 10.1038/s41436-018-0308-x pubmed: 30287922
de Wert G, Dondorp W, Clarke A, Dequeker EMC, Cordier C, Deans Z, et al. Opportunistic genomic screening. Recommendations of the European Society of Human Genetics. Eur J Hum Genet. 2021;29:365–77.
doi: 10.1038/s41431-020-00758-w pubmed: 33223530
Hershberger RE, Givertz MM, Ho CY, Judge DP, Kantor PF, McBride KL, et al. Genetic evaluation of cardiomyopathy: a clinical practice resource of the American College of Medical Genetics and Genomics (ACMG). Genet Med. 2018;20:899–909.
doi: 10.1038/s41436-018-0039-z pubmed: 29904160
Katz AE, Nussbaum RL, Solomon BD, Rehm HL, Williams MS, Biesecker LG. Management of secondary genomic findings. Am J Hum Genet 2020;107:3–14.
doi: 10.1016/j.ajhg.2020.05.002 pubmed: 32619490 pmcid: 7332641
Cannon A, McMillan O, Kelley WV, East KM, Cochran ME, Miskell EL, et al. Medical and psychosocial outcomes of state-funded population genomic screening. Clin Genet. 2023;104:434–42.
doi: 10.1111/cge.14394 pubmed: 37340305
Ng D, Johnston JJ, Teer JK, Singh LN, Peller LC, Wynter JS, et al. Interpreting secondary cardiac disease variants in an exome cohort. Circ Cardiovasc Genet. 2013;6:337–46.
doi: 10.1161/CIRCGENETICS.113.000039 pubmed: 23861362
Ormondroyd E, Harper AR, Thomson KL, Mackley MP, Martin J, Penkett CJ, et al. Secondary findings in inherited heart conditions: a genotype-first feasibility study to assess phenotype, behavioural and psychosocial outcomes. Eur J Hum Genet. https://doi.org/10.1038/s41431-020-0694-9 (2020).
Sapp JC, Facio FM, Cooper D, Lewis KL, Modlin E, van der Wees P, et al. A systematic literature review of disclosure practices and reported outcomes for medically actionable genomic secondary findings. Genet Med. 2021;23:2260–9.
doi: 10.1038/s41436-021-01295-7 pubmed: 34433902 pmcid: 9017985
Green RC, Shah N, Genetti CA, Holm IA, Beggs AH, Babyseq T, et al. Actionability of unanticipated monogenic disease risks in newborn genomic screening: Findings from the BabySeq Project Authors ll Actionability of unanticipated monogenic disease risks in newborn genomic screening: Findings from the BabySeq Project. Am J Hum Genet 2023;110:1034–45.
Byrjalsen A, Hansen TVO, Stoltze UK, Mehrjouy MM, Barnkob NM, Hjalgrim LL, et al. Nationwide germline whole genome sequencing of 198 consecutive pediatric cancer patients reveals a high frequency of cancer prone syndromes. PLoS Genet. 2020;16:1–24.
doi: 10.1371/journal.pgen.1009231
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17:405–24.
doi: 10.1038/gim.2015.30 pubmed: 25741868 pmcid: 4544753
Dansk Cardiologisk Selskab: Arvelige hjertesygdomme. 2013. https://www.cardio.dk/arvelige-hjertesygdomme2013 .
Aepc CC, Gregers B, Task W, Coordinator F, Behr ER, Kingdom U, et al. ESC Guidelines for the management of V tachyarrhytmias and the prevention of sudden cardiac death death of the European Society of Cardiology (ESC). 2022;3997–4126.
Haer-Wigman L, van der Schoot V, Feenstra I, Vulto-van Silfhout AT, Gilissen C, Brunner HG, et al. 1 in 38 individuals at risk of a dominant medically actionable disease. Eur J Hum Genet. 2019;27:325–30.
doi: 10.1038/s41431-018-0284-2 pubmed: 30291343
Beheshti SO, Madsen CM, Varbo A, Nordestgaard BG. Worldwide prevalence of familial hypercholesterolemia: meta-analyses of 11 million subjects. J Am Coll Cardiol. 2020;75:2553–66.
doi: 10.1016/j.jacc.2020.03.057 pubmed: 32439005
Benn M, Watts GF, Tybjaerg-Hansen A, Nordestgaard BG. Familial hypercholesterolemia in the Danish general population: Prevalence, coronary artery disease, and cholesterol-lowering medication. J Clin Endocrinol Metab. 2012;97:3956–64.
doi: 10.1210/jc.2012-1563 pubmed: 22893714
Wagener R, Walter C, Surowy HM, Brandes D, Soura S, Alzoubi D, et al. Noncancer-related Secondary Findings in a Cohort of 231 Children With Cancer and Their Parents. J Pediatr Hematol Oncol. 2023;45:E244–8.
doi: 10.1097/MPH.0000000000002475 pubmed: 35537032
Frey MK, Ahsan MD, Badiner N, Lin J, Narayan P, Nitecki R, et al. What happens in the long term: Uptake of cancer surveillance and prevention strategies among at-risk relatives with pathogenic variants detected via cascade testing. Cancer. 2022;128:4241–50.
doi: 10.1002/cncr.34482 pubmed: 36305018
Frey MK, Ahsan MD, Bergeron H, Lin J, Li X, Fowlkes RK, et al. Cascade testing for hereditary cancer syndromes: should we move toward direct relative contact? A systematic review and meta-analysis. J Clin Oncol. 2022;40:21–5.
doi: 10.1200/JCO.22.00303
Cirino AL, Harris SL, Murad AM, Hansen B, Malinowski J, Natoli JL, et al. The uptake and utility of genetic testing and genetic counseling for hypertrophic cardiomyopathy—A systematic review and meta-analysis. J Genet Couns. 2022;31:1290–305.
doi: 10.1002/jgc4.1604 pubmed: 35799446
Turner H, Jackson L. Evidence for penetrance in patients without a family history of disease: a systematic review. Eur J Hum Genet. 2020;28:539–50.
doi: 10.1038/s41431-019-0556-5 pubmed: 31937893 pmcid: 7170932
ClinGen FBN1 Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines Version 1. 2022;1. https://clinicalgenome.org/working-groups/sequence (accessed 23 Oct2023).
Ibañez-Juliá MJ, Berzero G, Reyes-Botero G, Maisonobe T, Lenglet T, Slim M, et al. Antineoplastic agents exacerbating Charcot Marie Tooth disease: red flags to avoid permanent disability. Acta Oncol (Madr). 2018;57:403–11.
doi: 10.1080/0284186X.2017.1415462
Miller DT, Lee K, Abul-Husn NS, Amendola LM, Brothers K, Chung WK, et al. ACMG SF v3.2 list for reporting of secondary findings in clinical exome and genome sequencing: A policy statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med. 2023;25:1–6.
Johnston JJ, Brennan ML, Radenbaugh B, Yoo SJ, Hernandez SM, Lewis KL, et al. The ACMG SF v3.0 gene list increases returnable variant detection by 22% when compared with v2.0 in the ClinSeq cohort. Genet Med. 2022;24:736–43.
doi: 10.1016/j.gim.2021.11.012 pubmed: 34906458
Willis AM, Terrill B, Pearce A, McEwen A, Ballinger ML, Young MA. My Research Results: a program to facilitate return of clinically actionable genomic research findings. Eur J Hum Genet. 2022;30:363–6.
doi: 10.1038/s41431-021-00973-z pubmed: 34602610
Middleton A, Patch C, Wiggins J, Barnes K, Crawford G, Benjamin C, et al. Position statement on opportunistic genomic screening from the Association of Genetic Nurses and Counsellors (UK and Ireland). Eur J Hum Genet. 2014;22:955–6.
doi: 10.1038/ejhg.2013.301 pubmed: 24398792 pmcid: 4350604

Auteurs

Sophia Hammer-Hansen (S)

Department of Clinical Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Ulrik Stoltze (U)

Department of Clinical Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Pediatric and Adolescent Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Emil Bartels (E)

Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Clinical Biochemistry, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Thomas van Overeem Hansen (TVO)

Department of Clinical Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Anna Byrjalsen (A)

Department of Clinical Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Pediatric and Adolescent Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Anne Tybjærg-Hansen (A)

Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Clinical Biochemistry, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Klaus Juul (K)

Department of Pediatric and Adolescent Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Kjeld Schmiegelow (K)

Department of Pediatric and Adolescent Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Jacob Tfelt (J)

Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Forensic Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Henning Bundgaard (H)

Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Department of Cardiology, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Karin Wadt (K)

Department of Clinical Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.
Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark.

Birgitte Rode Diness (BR)

Department of Clinical Genetics, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark. Birgitte.rode.diness@regionh.dk.
Institute of Clinical Medicine, Faculty of Medicine, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark. Birgitte.rode.diness@regionh.dk.

Classifications MeSH