Evaluation of AlphaFold structure-based protein stability prediction on missense variations in cancer.

AlphaFold cancer missense variants pLDDT score protein stability

Journal

Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621

Informations de publication

Date de publication:
2023
Historique:
received: 26 09 2022
accepted: 08 02 2023
entrez: 10 3 2023
pubmed: 11 3 2023
medline: 11 3 2023
Statut: epublish

Résumé

Identifying pathogenic missense variants in hereditary cancer is critical to the efforts of patient surveillance and risk-reduction strategies. For this purpose, many different gene panels consisting of different number and/or set of genes are available and we are particularly interested in a panel of 26 genes with a varying degree of hereditary cancer risk consisting of

Identifiants

pubmed: 36896237
doi: 10.3389/fgene.2023.1052383
pii: 1052383
pmc: PMC9988940
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1052383

Informations de copyright

Copyright © 2023 Keskin Karakoyun, Yüksel, Amanoglu, Naserikhojasteh, Yeşilyurt, Yakıcıer, Timuçin and Akyerli.

Déclaration de conflit d'intérêts

Authors AY, CY were employed by the company Acibadem Health Group. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Hilal Keskin Karakoyun (H)

Department of Biochemistry and Molecular Biology, Institute of Health Sciences, Acibadem Mehmet Ali Aydinlar University, Istanbul, Türkiye.

Şirin K Yüksel (ŞK)

Department of Biochemistry and Molecular Biology, Institute of Health Sciences, Acibadem Mehmet Ali Aydinlar University, Istanbul, Türkiye.

Ilayda Amanoglu (I)

Department of Biostatistics and Bioinformatics, Institute of Health Sciences, Acibadem Mehmet Ali Aydinlar University, Istanbul, Türkiye.

Lara Naserikhojasteh (L)

Department of Biostatistics and Bioinformatics, Institute of Health Sciences, Acibadem Mehmet Ali Aydinlar University, Istanbul, Türkiye.

Ahmet Yeşilyurt (A)

Acibadem Labgen Genetic Diagnosis Centre, Acibadem Health Group, Istanbul, Türkiye.

Cengiz Yakıcıer (C)

Acibadem Pathology Laboratories, Acibadem Health Group, Istanbul, Türkiye.

Emel Timuçin (E)

Department of Biostatistics and Medical Informatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Türkiye.

Cemaliye B Akyerli (CB)

Department of Medical Biology, School of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Türkiye.

Classifications MeSH