Comparative metagenomics at Solfatara and Pisciarelli hydrothermal systems in Italy reveal that ecological differences across substrates are not ubiquitous.
MAGs
Pisciarelli
Solfatara
hydrothermal system
metagenomics
microbial diversity
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2023
2023
Historique:
received:
10
10
2022
accepted:
06
01
2023
entrez:
23
2
2023
pubmed:
24
2
2023
medline:
24
2
2023
Statut:
epublish
Résumé
Continental hydrothermal systems (CHSs) are geochemically complex, and they support microbial communities that vary across substrates. However, our understanding of these variations across the complete range of substrates in CHS is limited because many previous studies have focused predominantly on aqueous settings. Here we used metagenomes in the context of their environmental geochemistry to investigate the ecology of different substrates (i.e., water, mud and fumarolic deposits) from Solfatara and Pisciarelli. Results indicate that both locations are lithologically similar with distinct fluid geochemistry. In particular, all substrates from Solfatara have similar chemistry whereas Pisciarelli substrates have varying chemistry; with water and mud from bubbling pools exhibiting high SO
Identifiants
pubmed: 36819055
doi: 10.3389/fmicb.2023.1066406
pmc: PMC9930910
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1066406Informations de copyright
Copyright © 2023 Ugwuanyi, Fogel, Bowden, Steele, De Natale, Troise, Somma, Piochi, Mormone and Glamoclija.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Références
Nat Commun. 2018 Nov 30;9(1):5114
pubmed: 30504855
Arch Microbiol. 1994;161(3):239-45
pubmed: 8161284
mSystems. 2018 Apr 10;3(3):
pubmed: 29657970
Astrobiology. 2019 Dec;19(12):1490-1504
pubmed: 31339746
Front Microbiol. 2018 Apr 30;9:840
pubmed: 29780369
J Mol Biol. 2016 Feb 22;428(4):726-731
pubmed: 26585406
Sci Total Environ. 2010 Aug 1;408(17):3623-31
pubmed: 20553938
Front Microbiol. 2020 Jul 14;11:1625
pubmed: 32760379
Environ Microbiol. 2019 Oct;21(10):3816-3830
pubmed: 31276280
Bioinformatics. 2019 Nov 15;:
pubmed: 31730192
Oecologia. 2005 Aug;144(4):628-35
pubmed: 15891815
Geobiology. 2018 Nov;16(6):674-692
pubmed: 30035368
Int J Environ Res Public Health. 2020 Apr 14;17(8):
pubmed: 32295125
PeerJ. 2019 Jul 26;7:e7359
pubmed: 31388474
Nat Commun. 2016 Apr 13;7:11257
pubmed: 27071849
ISME J. 2013 Apr;7(4):718-29
pubmed: 23235293
PLoS One. 2013 May 07;8(5):e62901
pubmed: 23667538
Nat Commun. 2019 Feb 8;10(1):681
pubmed: 30737379
Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Molecules. 2020 Sep 03;25(17):
pubmed: 32899230
Science. 1985 Oct 11;230(4722):132-8
pubmed: 17842674
Nat Commun. 2017 Jan 13;8:14007
pubmed: 28082747
Front Microbiol. 2019 Jan 10;9:3290
pubmed: 30687275
Eur J Biochem. 2004 Mar;271(6):1106-16
pubmed: 15009189
Bioinformatics. 2016 Feb 15;32(4):605-7
pubmed: 26515820
Eur J Biochem. 1993 Jul 15;215(2):421-9
pubmed: 8344309
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Microbiology (Reading). 2007 Jul;153(Pt 7):2231-2240
pubmed: 17600067
BMC Bioinformatics. 2008 Sep 19;9:386
pubmed: 18803844
ISME J. 2018 Aug;12(8):1918-1928
pubmed: 29662145
Sci Rep. 2014 Dec 19;4:7479
pubmed: 25524763
Environ Microbiol. 2015 May;17(5):1600-14
pubmed: 25142282
Microorganisms. 2021 Jun 29;9(7):
pubmed: 34209727
Mol Microbiol. 2004 May;52(3):751-61
pubmed: 15101981
ISME J. 2018 Jun;12(7):1706-1714
pubmed: 29467398
Mol Microbiol. 2004 May;52(3):763-70
pubmed: 15101982
Nat Methods. 2014 Nov;11(11):1144-6
pubmed: 25218180
Extremophiles. 2017 May;21(3):499-511
pubmed: 28289847
PLoS One. 2013;8(1):e53350
pubmed: 23326417
Appl Environ Microbiol. 2006 Jul;72(7):5069-72
pubmed: 16820507
FEMS Microbiol Ecol. 2011 Apr;76(1):74-88
pubmed: 21223339
Microb Ecol. 2018 Aug;76(2):387-403
pubmed: 29354879
Syst Appl Microbiol. 2000 Oct;23(3):305-14
pubmed: 11108007
FEMS Microbiol Ecol. 2022 Sep 19;98(10):
pubmed: 35883234
Geobiology. 2012 May;10(3):236-49
pubmed: 21955797
Antonie Van Leeuwenhoek. 2018 Jan;111(1):35-43
pubmed: 28815328
Front Microbiol. 2020 Feb 20;11:229
pubmed: 32153529
FEMS Microbiol Ecol. 2016 Sep;92(9):
pubmed: 27306555
PLoS One. 2020 Feb 13;15(2):e0228899
pubmed: 32053657
ISME J. 2014 Jun;8(6):1166-74
pubmed: 24430481
Front Microbiol. 2013 May 06;4:67
pubmed: 23653623
Geobiology. 2021 Sep;19(5):489-509
pubmed: 34143931
FEMS Microbiol Lett. 2020 Jan 1;367(1):
pubmed: 32055819
Environ Microbiol. 2008 Jun;10(6):1582-90
pubmed: 18331336
Microbiologyopen. 2015 Apr;4(2):267-281
pubmed: 25565172
Biochem Biophys Res Commun. 2016 Jan 22;469(4):967-77
pubmed: 26718401
World J Microbiol Biotechnol. 2019 Jan 28;35(2):29
pubmed: 30689069
Microb Ecol. 2015 Aug;70(2):411-24
pubmed: 25712554
Nature. 2020 Apr;580(7803):367-371
pubmed: 32296193
ISME J. 2010 Dec;4(12):1485-95
pubmed: 20535223
FEBS J. 2020 Mar;287(6):1116-1137
pubmed: 31595646
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
mSystems. 2019 Jun 4;4(4):
pubmed: 31164452
Nat Commun. 2018 Jul 23;9(1):2876
pubmed: 30038374
Genome Res. 2015 Jul;25(7):1043-55
pubmed: 25977477
Nat Rev Microbiol. 2010 Jun;8(6):447-60
pubmed: 20453874
Appl Environ Microbiol. 2009 Jul;75(13):4565-72
pubmed: 19429553
Appl Environ Microbiol. 2008 Sep;74(18):5802-8
pubmed: 18641166
Nat Geosci. 2017 Aug;10(8):577-581
pubmed: 30944580
Astrobiology. 2019 Dec;19(12):1505-1522
pubmed: 31592688
Front Microbiol. 2021 Apr 08;12:639697
pubmed: 33897644
BMC Ecol. 2014 May 28;14:16
pubmed: 24886397
Bioinformatics. 2014 Jul 15;30(14):2068-9
pubmed: 24642063
Microbiome. 2018 Sep 15;6(1):158
pubmed: 30219103
FEMS Microbiol Ecol. 2018 Dec 1;94(12):
pubmed: 30247697
Int J Syst Evol Microbiol. 2004 Nov;54(Pt 6):2079-2084
pubmed: 15545438
Mol Ecol Resour. 2019 Jul;19(4):982-996
pubmed: 30887686