Characterization of the O/ME-SA/Ind-2001d foot-and-mouth disease virus epidemic recorded in the Maghreb during 2014-2015.
Maghreb
O Ind-2001 epidemic
foot-and-mouth disease
isolates antigenic profile
isolates phylogenesis
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Sep 2022
Sep 2022
Historique:
revised:
24
05
2022
received:
30
01
2022
accepted:
25
05
2022
pubmed:
11
6
2022
medline:
30
9
2022
entrez:
10
6
2022
Statut:
ppublish
Résumé
The O/ME-SA/Ind-2001d has been the main foot-and-mouth disease virus (FMDV) lineage responsible for FMD epidemics outside the Indian subcontinent from 2013 to 2017. In 2014, outbreaks caused by this FMDV lineage were reported in Maghreb, where it was initially detected in Algeria and Tunisia and later in Morocco. This was the first incursion of an FMDV type O of exotic origin in the Maghreb region after 14 years of absence. In this study, we report analyses of both VP1 and whole-genome sequences (WGSs) generated from 22 isolates collected in Algeria and Tunisia between 2014 and 2015. All the WGSs analysed showed a minimum pairwise identity of 98.9% at the nucleotide level and 99% at the amino acid level (FMDV coding region). All Tunisian sequences shared a single putative common ancestor closely related to FMDV strains circulating in Libya during 2013. Whereas sequences from Algeria suggest the country experienced two virus introductions. The first introduction is represented by strains circulating in 2014 which are closely related to those from Tunisia, the second one, of which the origin is more uncertain, includes strains collected in Algeria in 2015 that gave origin to the 2015 outbreak reported in Morocco. Overall, our results demonstrated that a unique introduction of O/Ind-2001d FMDV occurred in Maghreb through Tunisia presumably in 2014, and from then the virus spread into Algeria and later into Morocco.
Identifiants
pubmed: 35686649
doi: 10.1111/tbed.14611
pmc: PMC9796625
doi:
Substances chimiques
Amino Acids
0
Nucleotides
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e2641-e2652Informations de copyright
© 2022 The Authors. Transboundary and Emerging Diseases published by Wiley-VCH GmbH.
Références
J Mol Evol. 1985;22(2):160-74
pubmed: 3934395
Infect Genet Evol. 2018 Apr;59:84-98
pubmed: 29412184
Proc Natl Acad Sci U S A. 1997 Jun 24;94(13):6815-9
pubmed: 9192648
J Gen Virol. 2013 Mar;94(Pt 3):559-569
pubmed: 23197575
J Virol. 2005 May;79(10):6487-504
pubmed: 15858032
Nature. 1964 Sep 26;203:1355-7
pubmed: 14207308
Virus Res. 2003 Jan;91(1):9-32
pubmed: 12527435
Vet Microbiol. 2014 Jun 25;171(1-2):175-81
pubmed: 24720890
Mol Biol Evol. 1993 May;10(3):512-26
pubmed: 8336541
Rev Sci Tech. 2016 Dec;35(3):757-768
pubmed: 28332653
Virus Res. 2003 Jan;91(1):65-80
pubmed: 12527438
Rev Sci Tech. 2000 Dec;19(3):744-53
pubmed: 11107617
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
Rev Sci Tech. 2016 Dec;35(3):741-755
pubmed: 28332654
Virus Res. 2003 Jan;91(1):47-63
pubmed: 12527437
J Virol. 1988 Aug;62(8):2782-9
pubmed: 2455819
BMC Genomics. 2008 Jan 07;9:5
pubmed: 18179705
Transbound Emerg Dis. 2013 Jun;60(3):197-203
pubmed: 22551096
Syst Biol. 2018 Sep 1;67(5):901-904
pubmed: 29718447
Virol J. 2016 Jun 22;13:107
pubmed: 27334704
Vaccine. 2017 May 9;35(20):2761-2765
pubmed: 28396208
PLoS Comput Biol. 2019 Apr 8;15(4):e1006650
pubmed: 30958812
J Virol. 1988 Jun;62(6):2033-40
pubmed: 2835507
Epidemiol Infect. 1999 Jun;122(3):529-38
pubmed: 10459658
Philos Trans R Soc Lond B Biol Sci. 2009 Sep 27;364(1530):2657-67
pubmed: 19687036
Transbound Emerg Dis. 2022 Sep;69(5):e2641-e2652
pubmed: 35686649
BMC Evol Biol. 2017 Feb 6;17(1):42
pubmed: 28166715
Transbound Emerg Dis. 2019 Jan;66(1):7-13
pubmed: 30222914
Mol Biol Evol. 2021 Sep 27;38(10):4346-4361
pubmed: 34115138
Sci Rep. 2018 Oct 2;8(1):14693
pubmed: 30279570
J Comp Pathol. 2003 Jul;129(1):1-36
pubmed: 12859905
J Gen Virol. 1989 Jun;70 ( Pt 6):1483-91
pubmed: 2471811
Prev Vet Med. 2013 Nov 1;112(3-4):161-73
pubmed: 23958457
Virology. 1990 Nov;179(1):26-34
pubmed: 1699353
Genome Announc. 2014 Apr 10;2(2):
pubmed: 24723708
PLoS One. 2012;7(11):e49650
pubmed: 23226216
Genome Announc. 2016 Apr 21;4(2):
pubmed: 27103736
Emerg Infect Dis. 2005 Dec;11(12):1887-93
pubmed: 16485475
Virus Res. 1995 Sep;38(1):1-24
pubmed: 8546007
Virus Genes. 2002;25(1):23-34
pubmed: 12206305
J Gen Virol. 1987 Jun;68 ( Pt 6):1637-47
pubmed: 2438378
J Virol. 1989 May;63(5):2143-51
pubmed: 2467993
Clin Microbiol Rev. 2004 Apr;17(2):465-93
pubmed: 15084510
Transbound Emerg Dis. 2020 Nov;67(6):3005-3015
pubmed: 32530134
Biologicals. 1991 Oct;19(4):299-310
pubmed: 1665700
Structure. 1994 Feb 15;2(2):123-39
pubmed: 8081743
Vet Microbiol. 2015 Aug 5;178(3-4):181-9
pubmed: 26049591
J Virol. 2009 Nov;83(21):11356-66
pubmed: 19710149
J Gen Virol. 1989 Jan;70 ( Pt 1):45-57
pubmed: 2471782
PLoS Comput Biol. 2009 Sep;5(9):e1000520
pubmed: 19779555
Arch Virol. 2006 Jan;151(1):127-42
pubmed: 16096711