Natural co-infection of divergent hepatitis B and C virus homologues in carnivores.
HBV
HCV
carnivores
co-infection
evolution
hepatitis
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Mar 2022
Mar 2022
Historique:
revised:
10
08
2021
received:
26
06
2021
accepted:
27
09
2021
pubmed:
5
10
2021
medline:
1
4
2022
entrez:
4
10
2021
Statut:
ppublish
Résumé
In humans, co-infection of hepatitis B and C viruses (HBV, HCV) is common and aggravates disease outcome. Infection-mediated disease aggravation is poorly understood, partly due to lack of suitable animal models. Carnivores are understudied for hepatitis virus homologues. We investigated Mexican carnivores (ringtails, Bassariscus astutus) for HBV and HCV homologues. Three out of eight animals were infected with a divergent HBV termed ringtail HBV (RtHBV) at high viral loads of 5 × 10
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
195-203Subventions
Organisme : European Union's Horizon 2020 Research and Innovation Program through the ZIKAlliance project
ID : 734548
Organisme : The Instituto Mexicano del Seguro Social (IMSS), Fondo de Investigacion en Salud (FIS)
ID : FIS/IMSS/PROT/G17-2/1728
Informations de copyright
© 2021 The Authors. Transboundary and Emerging Diseases published by Wiley-VCH GmbH.
Références
Aghazadeh, M., Shi, M., Barrs, V., Mcluckie, A., Lindsay, S., Jameson, B., Hampson, B., Holmes, E., & Beatty, J. (2018). A novel hepadnavirus identified in an immunocompromised domestic cat in Australia. Viruses, 10(5), 269. https://doi.org/10.3390/v10050269
Bellecave, P., Gouttenoire, J., Gajer, M., Brass, V., Koutsoudakis, G., Blum, H. E., Bartenschlager, R., Nassal, M., & Moradpour, D. (2009). Hepatitis B and C virus coinfection: A novel model system reveals the absence of direct viral interference. Hepatology, 50(1), 46-55. https://doi.org/10.1002/hep.22951
Bletsa, M., Vrancken, B., Gryseels, S., Boonen, I., Fikatas, A., Li, Y., Laudisoit, A., Lequime, S., Bryja, J., Makundi, R., Meheretu, Y., Akaibe, B. D., Mbalitini, S. G., Van De Perre, F., Van Houtte, N., Těšíková, J., Wollants, E., Van Ranst, M., Pybus, O. G., … Lemey, P. (2021). Molecular detection and genomic characterisation of diverse hepaciviruses in African rodents. Virus Evolution, 7. https://doi.org/10.1093/ve/veab036
Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
De Carvalho Dominguez Souza, B. F., König, A., Rasche, A., De Oliveira Carneiro, I., Stephan, N., Corman, V. M., Roppert, P. L., Goldmann, N., Kepper, R., Müller, S. F., Völker, C., De Souza, A. J. S., Gomes-Gouvêa, M. S., Moreira-Soto, A., Stöcker, A., Nassal, M., Franke, C. R., Rebello Pinho, J. R., Soares, M. D.o C. P., … Drexler, J. F. (2018). A novel hepatitis B virus species discovered in capuchin monkeys sheds new light on the evolution of primate hepadnaviruses. Journal of Hepatology, 68(6), 1114-1122. https://doi.org/10.1016/j.jhep.2018.01.029
Drexler, J. F., Corman, V. M., Müller, M. A., Lukashev, A. N., Gmyl, A., Coutard, B., Adam, A., Ritz, D., Leijten, L. M., Van Riel, D., Kallies, R., Klose, S. M., Gloza-Rausch, F., Binger, T., Annan, A., Adu-Sarkodie, Y., Oppong, S., Bourgarel, M., Rupp, D., … Drosten, C. (2013). Evidence for novel hepaciviruses in rodents. Plos Pathogens, 9(6), e1003438. https://doi.org/10.1371/journal.ppat.1003438
Drexler, J. F., Geipel, A., Konig, A., Corman, V. M., Van Riel, D., Leijten, L. M., Bremer, C. M., Rasche, A., Cottontail, V. M., Maganga, G. D., Schlegel, M., Muller, M. A., Adam, A., Klose, S. M., Borges Carneiro, A. J., Stocker, A., Franke, C. R., Gloza-Rausch, F., Geyer, J., … Drosten, C. (2013). Bats carry pathogenic hepadnaviruses antigenically related to hepatitis B virus and capable of infecting human hepatocytes. Proceedings of the National Academy of Sciences of the United States of America, 110(40), 16151-16156. https://doi.org/10.1073/pnas.1308049110
Drexler, J. F., Kupfer, B., Petersen, N., Grotto, R. M. T., Rodrigues, S. M. C., Grywna, K., Panning, M., Annan, A., Silva, G. F., Douglas, J., Koay, E. S. C., Smuts, H., Netto, E. M., Simmonds, P., Pardini, M. I. D. M. C., Roth, W. K., & Drosten, C. (2009). A novel diagnostic target in the hepatitis C virus genome. Plos Medicine, 6(2), e1000031. https://doi.org/10.1371/journal.pmed.1000031
Foley, N. M., Springer, M. S., & Teeling, E. C. (2016). Mammal madness: Is the mammal tree of life not yet resolved? Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 371(1699), 20150140. https://doi.org/10.1098/rstb.2015.0140
Gray, R. R., Parker, J., Lemey, P., Salemi, M., Katzourakis, A., & Pybus, O. G. (2011). The mode and tempo of hepatitis C virus evolution within and among hosts. BMC Evolutionary Biology, 11, 131. https://doi.org/10.1186/1471-2148-11-131
Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17(8), 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
ICTV. (2019a). Genus: Hepacivirus. https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/flaviviridae/362/genus-hepacivirus
ICTV. (2019b). Genus: Orthohepadnavirus. https://talk.ictvonline.org/ictv-reports/ictv_online_report/reverse-transcribing-dna-and-rna-viruses/w/hepadnaviridae/1317/genus-orthohepadnavirus
Katoh, K., & Standley, D. M. (2013). MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution, 30(4), 772-780. https://doi.org/10.1093/molbev/mst010
Kim, Y.-I., Kim, S.-G., Kim, S.-M., Kim, E.-H., Park, S.-J., Yu, K.-M., Chang, J.-H., Kim, E. J., Lee, S., Casel, M. A. B., Um, J., Song, M.-S., Jeong, H. W., Lai, V. D., Kim, Y., Chin, B. S., Park, J.-S., Chung, K.-H., Foo, S.-S., … Choi, Y. K. (2020). Infection and rapid transmission of SARS-CoV-2 in ferrets. Cell Host Microbe, 27(5), 704-709.e2. https://doi.org/10.1016/j.chom.2020.03.023
Konstantinou, D., & Deutsch, M. (2015). The spectrum of HBV/HCV coinfection: Epidemiology, clinical characteristics, viral interactions and management. Annals of Gastroenterology, 28(2), 221-228. https://www.ncbi.nlm.nih.gov/pubmed/25830779
Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6), 1547-1549. https://doi.org/10.1093/molbev/msy096
Lanave, G., Capozza, P., Diakoudi, G., Catella, C., Catucci, L., Ghergo, P., Stasi, F., Barrs, V., Beatty, J., Decaro, N., Buonavoglia, C., Martella, V., & Camero, M. (2019). Identification of hepadnavirus in the sera of cats. Scientific Reports, 9(1), 10668. https://doi.org/10.1038/s41598-019-47175-8
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9(4), 357-359. https://doi.org/10.1038/nmeth.1923
Martin, D. P., Murrell, B., Golden, M., Khoosal, A., & Muhire, B. (2015). RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evolution, 1(1), vev003. https://doi.org/10.1093/ve/vev003
Moreira-Soto, A., Arroyo-Murillo, F., Sander, A.-L., Rasche, A., Corman, V., Tegtmeyer, B., Steinmann, E., Corrales-Aguilar, E., Wieseke, N., Avey-Arroyo, J., & Drexler, J. F. (2020). Cross-order host switches of hepatitis C-related viruses illustrated by a novel hepacivirus from sloths. Virus Evolution, 6(2), veaa033. https://doi.org/10.1093/ve/veaa033
Nowotny, N. (1994). The domestic cat: A possible transmitter of viruses from rodents to man. Lancet, 343(8902), 921. https://doi.org/10.1016/s0140-6736(94)90043-4
Rasche, A., Lehmann, F., Goldmann, N., Nagel, M., Moreira-Soto, A., Nobach, D., De Oliveira Carneiro, I., Osterrieder, N., Greenwood, A. D., Steinmann, E., Lukashev, A. N., Schuler, G., Glebe, D., & Drexler, J. F. (2021). A hepatitis B virus causes chronic infections in equids worldwide. Proceedings of the National Academy of Sciences of the United States of America, 118(13), e2013982118. https://doi.org/10.1073/pnas.2013982118
Rasche, A., Lehmann, F., König, A., Goldmann, N., Corman, V. M., Moreira-Soto, A., Geipel, A., Van Riel, D., Vakulenko, Y. A., Sander, A.-L., Niekamp, H., Kepper, R., Schlegel, M., Akoua-Koffi, C., Souza, B. F. C. D., Sahr, F., Olayemi, A., Schulze, V., Petraityte-Burneikiene, R., … Drexler, J. F. (2019). Highly diversified shrew hepatitis B viruses corroborate ancient origins and divergent infection patterns of mammalian hepadnaviruses. Proceedings of the National Academy of Sciences of the United States of America, 116(34), 17007-17012. https://doi.org/10.1073/pnas.1908072116
Rasche, A., Sander, A. L., Corman, V. M., & Drexler, J. F. (2019). Evolutionary biology of human hepatitis viruses. Journal of Hepatology, 70(3), 501-520. https://doi.org/10.1016/j.jhep.2018.11.010
Reid, F., Schipper, J., & Timm, R. (2016). Bassariscus astutus. The IUCN Red List of Threatened Species 2016: e.T41680A45215881. https://doi.org/10.2305/IUCN.UK.2016-1.RLTS.T41680A45215881.en
Revill, P. A., Tu, T., Netter, H. J., Yuen, L. K. W., Locarnini, S. A., & Littlejohn, M. (2020). The evolution and clinical impact of hepatitis B virus genome diversity. Nature Reviews Gastroenterology & Hepatology, 17(10), 618-634. https://doi.org/10.1038/s41575-020-0296-6
Ryll, R., Heckel, G., Corman, V. M., Drexler, J. F., & Ulrich, R. G. (2019). Genomic and spatial variability of a European common vole hepevirus. Archives of Virology, 164(11), 2671-2682. https://doi.org/10.1007/s00705-019-04347-1
Smith, D. B., Becher, P., Bukh, J., Gould, E. A., Meyers, G., Monath, T., Muerhoff, A. S., Pletnev, A., Rico-Hesse, R., Stapleton, J. T., & Simmonds, P. (2016). Proposed update to the taxonomy of the genera hepacivirus and pegivirus within the flaviviridae family. Journal of General Virology, 97(11), 2894-2907. https://doi.org/10.1099/jgv.0.000612
Theze, J., Lowes, S., Parker, J., & Pybus, O. G. (2015). Evolutionary and phylogenetic analysis of the hepaciviruses and pegiviruses. Genome Biology and Evolution, 7(11), 2996-3008. https://doi.org/10.1093/gbe/evv202
Walter, S., Rasche, A., Moreira-Soto, A., Pfaender, S., Bletsa, M., Corman, V. M., Aguilar-Setien, A., García-Lacy, F., Hans, A., Todt, D., Schuler, G., Shnaiderman-Torban, A., Steinman, A., Roncoroni, C., Veneziano, V., Rusenova, N., Sandev, N., Rusenov, A., Zapryanova, D., … Drexler, J. F. (2017). Differential infection patterns and recent evolutionary origins of equine hepaciviruses in donkeys. Journal of Virology, 91(1), e01711-16. https://doi.org/10.1128/JVI.01711-16
WHO. ((2017), April 2017). Global hepatitis report, 2017. https://www.who.int/hepatitis/publications/global-hepatitis-report2017/en/
Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research, 31(13), 3406-3415. https://doi.org/10.1093/nar/gkg595