Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus.
Marsupenaeus japonicus
Penaeus japonicus
genome annotation
genome sequencing
kuruma prawn
penaeid shrimp
penaeidae
transcriptome assembly
Journal
G3 (Bethesda, Md.)
ISSN: 2160-1836
Titre abrégé: G3 (Bethesda)
Pays: England
ID NLM: 101566598
Informations de publication
Date de publication:
19 10 2021
19 10 2021
Historique:
received:
07
04
2021
accepted:
18
07
2021
pubmed:
14
9
2021
medline:
8
1
2022
entrez:
13
9
2021
Statut:
ppublish
Résumé
The kuruma shrimp Marsupenaeus japonicus (order Decapoda, family Penaeidae) is an economically important crustacean that occurs in shallow, warm seas across the Indo-Pacific. Here, using a combination of Illumina and Oxford Nanopore Technologies platforms, we produced a draft genome assembly of M. japonicus (1.70 Gbp; 18,210 scaffolds; scaffold N50 = 234.9 kbp; 34.38% GC, 93.4% BUSCO completeness) and a complete mitochondrial genome sequence (15,969 bp). As with other penaeid shrimp genomes, the M. japonicus genome is extremely rich in simple repeats, which occupies 27.4% of the assembly. A total of 26,381 protein-coding gene models (94.7% BUSCO completeness) were predicted, of which 18,005 genes (68.2%) were assigned functional description by at least one method. We also produced an Illumina-based transcriptome shotgun assembly (40,991 entries; 93.0% BUSCO completeness) and a PacBio Iso-Seq transcriptome assembly (25,415 entries; 67.5% BUSCO completeness). We envision that the M. japonicus genome and transcriptome assemblies will serve as useful resources for the basic research, fisheries management, and breeding programs of M. japonicus.
Identifiants
pubmed: 34515781
pii: 6342415
doi: 10.1093/g3journal/jkab268
pmc: PMC8527471
pii:
doi:
Banques de données
figshare
['10.25387/g3.15043521']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
© The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America.
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