Global analysis of the apple fruit microbiome: are all apples the same?
Journal
Environmental microbiology
ISSN: 1462-2920
Titre abrégé: Environ Microbiol
Pays: England
ID NLM: 100883692
Informations de publication
Date de publication:
10 2021
10 2021
Historique:
revised:
25
02
2021
received:
31
01
2021
accepted:
16
03
2021
pubmed:
19
3
2021
medline:
18
3
2022
entrez:
18
3
2021
Statut:
ppublish
Résumé
We present the first worldwide study on the apple (Malus × domestica) fruit microbiome that examines questions regarding the composition and the assembly of microbial communities on and in apple fruit. Results revealed that the composition and structure of the fungal and bacterial communities associated with apple fruit vary and are highly dependent on geographical location. The study also confirmed that the spatial variation in the fungal and bacterial composition of different fruit tissues exists at a global level. Fungal diversity varied significantly in fruit harvested in different geographical locations and suggests a potential link between location and the type and rate of postharvest diseases that develop in each country. The global core microbiome of apple fruit was represented by several beneficial microbial taxa and accounted for a large fraction of the fruit microbial community. The study provides foundational information about the apple fruit microbiome that can be utilized for the development of novel approaches for the management of fruit quality and safety, as well as for reducing losses due to the establishment and proliferation of postharvest pathogens. It also lays the groundwork for studying the complex microbial interactions that occur on apple fruit surfaces.
Identifiants
pubmed: 33734550
doi: 10.1111/1462-2920.15469
pmc: PMC8596679
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
6038-6055Informations de copyright
© 2021 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.
Références
Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16428-33
pubmed: 19805315
Front Microbiol. 2019 Nov 06;10:2502
pubmed: 31781054
Appl Environ Microbiol. 2006 Jul;72(7):5069-72
pubmed: 16820507
Mol Ecol. 2006 Jul;15(8):2171-82
pubmed: 16780433
FEMS Microbiol Ecol. 2017 Feb;93(2):
pubmed: 27940644
Science. 2016 Jun 17;352(6292):1392-3
pubmed: 27313024
FEMS Microbiol Rev. 2008 Aug;32(5):723-35
pubmed: 18549407
PLoS One. 2018 Nov 29;13(11):e0199403
pubmed: 30496186
New Phytol. 2010 Apr;186(2):281-5
pubmed: 20409185
Appl Environ Microbiol. 2000 Jul;66(7):3073-7
pubmed: 10877808
PLoS Pathog. 2019 Jun 13;15(6):e1007740
pubmed: 31194849
Environ Microbiol. 2016 May;18(5):1403-14
pubmed: 26271760
Hortic Res. 2018 Jan 3;5:1
pubmed: 29423231
J Exp Bot. 2016 Feb;67(4):995-1002
pubmed: 26547794
Hortic Res. 2016 Oct 05;3:16047
pubmed: 27766161
Front Plant Sci. 2017 Nov 16;8:1981
pubmed: 29201037
Front Microbiol. 2016 Dec 07;7:1971
pubmed: 28003808
Microorganisms. 2020 Jun 23;8(6):
pubmed: 32585961
Nat Methods. 2016 Jul;13(7):581-3
pubmed: 27214047
Clin Microbiol Infect. 2012 Jul;18 Suppl 4:16-20
pubmed: 22647042
Plant Physiol. 2010 Jun;153(2):851-62
pubmed: 20388661
Crit Rev Biotechnol. 2020 Mar;40(2):138-152
pubmed: 31906737
Front Plant Sci. 2019 Jul 25;10:922
pubmed: 31404250
ISME J. 2010 Jun;4(6):719-28
pubmed: 20164863
Curr Issues Mol Biol. 2019;30:89-106
pubmed: 30070653
PLoS One. 2012;7(7):e40863
pubmed: 22808280
Nat Rev Gastroenterol Hepatol. 2019 Oct;16(10):605-616
pubmed: 31296969
Front Microbiol. 2020 Mar 18;11:427
pubmed: 32256478
Front Microbiol. 2019 Jul 24;10:1629
pubmed: 31396172
PLoS One. 2015 Jul 01;10(7):e0131069
pubmed: 26132745
PLoS Genet. 2012;8(5):e1002703
pubmed: 22589740
Nat Methods. 2013 Dec;10(12):1200-2
pubmed: 24076764
Genome Biol. 2011 Jun 24;12(6):R60
pubmed: 21702898
Phytopathology. 2017 Mar;107(3):256-263
pubmed: 27898265
Nat Methods. 2015 Jan;12(1):59-60
pubmed: 25402007
FEMS Microbiol Ecol. 2008 Jul;65(1):156-68
pubmed: 18559016
Microorganisms. 2020 Apr 28;8(5):
pubmed: 32354087
ISME J. 2021 Jan;15(1):318-329
pubmed: 33024293
Microbiome. 2020 Jun 30;8(1):103
pubmed: 32605663
Nat Commun. 2018 Nov 20;9(1):4894
pubmed: 30459421
Nat Rev Microbiol. 2020 Nov;18(11):607-621
pubmed: 32788714
Ecol Evol. 2019 Oct 19;9(21):12231-12244
pubmed: 31832156
FEMS Microbiol Ecol. 2020 Jul 1;96(7):
pubmed: 32542314
Front Microbiol. 2020 Jun 18;11:1257
pubmed: 32625183
Trends Plant Sci. 2017 Jul;22(7):555-558
pubmed: 28592368
Front Microbiol. 2018 May 15;9:946
pubmed: 29867854
Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6548-53
pubmed: 23576752
Nat Methods. 2013 Oct;10(10):999-1002
pubmed: 23995388
Nat Biotechnol. 2019 Aug;37(8):852-857
pubmed: 31341288
Microbiome. 2018 Jan 27;6(1):18
pubmed: 29374490