Apparent scaling of virus surface roughness-An example from the pandemic SARS-nCoV.
Fractal scaling
SARS-CoV (CoV)
SARS-nCoV (nCoV)
Self-similarity
Spectral analysis
Surface roughness
Journal
Physica D. Nonlinear phenomena
ISSN: 0167-2789
Titre abrégé: Physica D
Pays: Netherlands
ID NLM: 9890573
Informations de publication
Date de publication:
15 Dec 2020
15 Dec 2020
Historique:
received:
01
07
2020
revised:
24
08
2020
accepted:
25
08
2020
pubmed:
10
9
2020
medline:
10
9
2020
entrez:
9
9
2020
Statut:
ppublish
Résumé
This paper investigates the scaling of the surface roughness of coronavirus, including the SARS-nCoV based on fractal and spectral analyses of their published electron microscopy images. The box-counting fractal dimensions obtained are subjected to ANOVA tests for statistical significance. Results show that the SARS-nCoV particles could not statistically be resolved by their shape on the basis of the fractal dimension values, but they could be distinguished from the earlier SARS-CoV particles. MANOVA test results require interaction of factors used for classifying virions into different types. The topological entropies, a measure of randomness in a system, measured for the images of varying size show correlation with the fractal dimensions. Spectral analyses of our data show a departure from power-law self-similarity, suggesting an apparent scaling of surface roughness over a band of maximum an order of magnitude. The spectral crossover that corresponds to characteristic length scale may represent average viral size. Our results may be useful in inferring the nature of surface-contact between the viral and human cell, causing infection and also in providing clues for new drugs, although it is too early to say. In addition, limitations of this study, including possible ways to avoid the bias in scaling exponents due to the use of different techniques are discussed.
Identifiants
pubmed: 32901164
doi: 10.1016/j.physd.2020.132704
pii: S0167-2789(20)30491-7
pii: 132704
pmc: PMC7471937
doi:
Types de publication
Journal Article
Langues
eng
Pagination
132704Informations de copyright
© 2020 Elsevier B.V. All rights reserved.
Déclaration de conflit d'intérêts
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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