Long-Read cDNA Sequencing Enables a "Gene-Like" Transcript Annotation of Transposable Elements.
Journal
The Plant cell
ISSN: 1532-298X
Titre abrégé: Plant Cell
Pays: England
ID NLM: 9208688
Informations de publication
Date de publication:
09 2020
09 2020
Historique:
received:
12
02
2020
revised:
11
06
2020
accepted:
25
06
2020
pubmed:
11
7
2020
medline:
22
5
2021
entrez:
11
7
2020
Statut:
ppublish
Résumé
Transcript-based annotations of genes facilitate both genome-wide analyses and detailed single-locus research. In contrast, transposable element (TE) annotations are rudimentary, consisting of information only on TE location and type. The repetitiveness and limited annotation of TEs prevent the ability to distinguish between potentially functional expressed elements and degraded copies. To improve genome-wide TE bioinformatics, we performed long-read sequencing of cDNAs from Arabidopsis (
Identifiants
pubmed: 32647069
pii: tpc.20.00115
doi: 10.1105/tpc.20.00115
pmc: PMC7474280
doi:
Substances chimiques
DNA Transposable Elements
0
DNA, Complementary
0
RNA, Small Interfering
0
Types de publication
Journal Article
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
2687-2698Commentaires et corrections
Type : CommentIn
Informations de copyright
© 2020 American Society of Plant Biologists. All rights reserved.
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