Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using
metagenomic analyses
metaproteomic analysis
microbial ecology
rhizosphere
stable isotope probing
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2019
2019
Historique:
received:
16
07
2019
accepted:
08
11
2019
entrez:
24
12
2019
pubmed:
24
12
2019
medline:
24
12
2019
Statut:
epublish
Résumé
Stable isotope probing (SIP) enables tracking the nutrient flows from isotopically labeled substrates to specific microorganisms in microbial communities. In proteomic SIP, labeled proteins synthesized by the microbial consumers of labeled substrates are identified with a shotgun proteomics approach. Here, proteomic SIP was combined with targeted metagenomic binning to reconstruct metagenome-assembled genomes (MAGs) of the microorganisms producing labeled proteins. This approach was used to track carbon flows from
Identifiants
pubmed: 31866955
doi: 10.3389/fmicb.2019.02706
pmc: PMC6908837
doi:
Types de publication
Journal Article
Langues
eng
Pagination
2706Informations de copyright
Copyright © 2019 Li, Yao, Guo, Crits-Christoph, Mayes, Hervey, Lebeis, Banfield, Hurst, Hettich and Pan.
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