Mode and tempo of human hepatitis virus evolution.
Host switch
Human hepatitis virus
Molecular dating
NHP, non-human primates
ORF, open reading frame
RdRp, RNA-dependent RNA polymerase
STI, sexually transmitted infection
TDRP, time-dependent rate phenomenon
TMRCA, time to the most recent common ancestor
Zoonosis
Journal
Computational and structural biotechnology journal
ISSN: 2001-0370
Titre abrégé: Comput Struct Biotechnol J
Pays: Netherlands
ID NLM: 101585369
Informations de publication
Date de publication:
2019
2019
Historique:
received:
29
07
2019
revised:
19
09
2019
accepted:
21
09
2019
entrez:
27
11
2019
pubmed:
27
11
2019
medline:
27
11
2019
Statut:
epublish
Résumé
Human viral hepatitis, a major cause of morbidity and mortality worldwide, is caused by highly diverse viruses with different genetic, ecological, and pathogenetic features. Technological advances that allow throughput sequencing of viral genomes, as well as the development of computational tools to analyze such genome data, have largely expanded our knowledge on the host range and evolutionary history of human hepatitis viruses. Thus, with the exclusion of hepatitis D virus, close or distant relatives of these human pathogens were identified in a number of domestic and wild mammals. Also, sequences of human viral strains isolated from different geographic locations and over different time-spans have allowed the application of phylogeographic and molecular dating approaches to large viral phylogenies. In this review, we summarize the most recent insights into our understanding of the evolutionary events and ecological contexts that determined the origin and spread of human hepatitis viruses.
Identifiants
pubmed: 31768229
doi: 10.1016/j.csbj.2019.09.007
pii: S2001-0370(19)30309-5
pmc: PMC6872792
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
1384-1395Informations de copyright
© 2019 The Authors.
Déclaration de conflit d'intérêts
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
Références
Open Forum Infect Dis. 2019 Feb 22;6(3):ofz076
pubmed: 30949527
Intervirology. 2014;57(3-4):141-50
pubmed: 25034481
Infect Genet Evol. 2016 Oct;44:34-42
pubmed: 27321439
Methods Mol Biol. 2009;537:113-37
pubmed: 19378142
Infect Genet Evol. 2017 Oct;54:486-490
pubmed: 28827173
PLoS Pathog. 2010 Mar 05;6(3):e1000797
pubmed: 20221432
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5523-8
pubmed: 19307567
Cell. 2019 May 30;177(6):1419-1435.e31
pubmed: 31056281
Trends Ecol Evol. 2018 Mar;33(3):149-152
pubmed: 29454669
Curr Top Microbiol Immunol. 2013;369:1-15
pubmed: 23463195
J Med Virol. 2017 Feb;89(2):187-194
pubmed: 27447819
Viruses. 2018 Dec 17;10(12):
pubmed: 30562970
Curr Opin Virol. 2016 Feb;16:1-7
pubmed: 26517843
Science. 1990 Mar 16;247(4948):1335-9
pubmed: 2107574
Lancet Gastroenterol Hepatol. 2017 Mar;2(3):161-176
pubmed: 28404132
Cold Spring Harb Perspect Med. 2015 May 01;5(5):a021410
pubmed: 25934461
Hepatology. 2013 Mar;57(3):908-16
pubmed: 22987324
PLoS Pathog. 2013;9(6):e1003438
pubmed: 23818848
J Hepatol. 2019 May;70(5):1023-1025
pubmed: 30803864
Infect Genet Evol. 2014 Jan;21:67-82
pubmed: 24200590
PLoS Pathog. 2016 Apr 01;12(4):e1005521
pubmed: 27035822
Cold Spring Harb Perspect Med. 2018 Dec 3;8(12):
pubmed: 29610147
Antiviral Res. 2018 Oct;158:34-44
pubmed: 30059722
Mol Ecol. 2016 May;25(9):1911-24
pubmed: 26880113
Mol Ecol. 2015 Dec;24(24):6007-12
pubmed: 26769402
J Gen Virol. 2014 Oct;95(Pt 10):2223-32
pubmed: 24989172
Virus Evol. 2019 Jul 15;5(2):vez021
pubmed: 31321078
Emerg Infect Dis. 2013 Apr;19(4):559-65
pubmed: 23628346
J Clin Virol. 2018 Jul;104:5-10
pubmed: 29702351
Virology. 2015 Oct;484:93-102
pubmed: 26086431
Am J Med. 1980 Jun;68(6):818-24
pubmed: 6770682
Lancet. 1980 Oct 25;2(8200):876-9
pubmed: 6107544
J Mol Evol. 2007 Aug;65(2):197-205
pubmed: 17684696
Sci Rep. 2018 Jun 11;8(1):8821
pubmed: 29891869
Proc Natl Acad Sci U S A. 2013 May 14;110(20):8194-9
pubmed: 23610427
Arch Virol. 2018 Dec;163(12):3403-3407
pubmed: 30220034
Trends Microbiol. 2015 Mar;23(3):142-53
pubmed: 25564096
Nat Commun. 2019 May 8;10(1):2098
pubmed: 31068585
Virus Res. 2007 Aug;127(2):151-7
pubmed: 17328982
Bioinformatics. 2014 May 1;30(9):1312-3
pubmed: 24451623
Proc Biol Sci. 2014 Sep 22;281(1791):20141122
pubmed: 25080342
Nature. 2018 Apr;556(7700):197-202
pubmed: 29618816
Science. 2001 Jun 22;292(5525):2323-5
pubmed: 11423661
mBio. 2019 Apr 2;10(2):
pubmed: 30940697
Biol Rev Camb Philos Soc. 2018 May;93(2):1165-1191
pubmed: 29243391
Emerg Microbes Infect. 2018 Sep 26;7(1):164
pubmed: 30258048
Lancet. 2011 Jul 2;378(9785):73-85
pubmed: 21511329
Science. 1973 Dec 7;182(4116):1026-8
pubmed: 4356028
Emerg Infect Dis. 2012 Aug;18(8):1274-81
pubmed: 22840216
J Virol. 2015 Jul;89(14):7007-15
pubmed: 25926652
mBio. 2015 Aug 25;6(4):null
pubmed: 26307166
Am J Epidemiol. 1979 Sep;110(3):227-36
pubmed: 224696
Clin Microbiol Rev. 2001 Jan;14(1):38-58
pubmed: 11148002
PLoS Genet. 2014 Dec 11;10(12):e1004559
pubmed: 25501991
mBio. 2013 Apr 09;4(2):e00216-13
pubmed: 23572554
Philos Trans R Soc Lond B Biol Sci. 2001 Jul 29;356(1411):1013-26
pubmed: 11516379
Mol Biol Evol. 2014 Sep;31(9):2356-64
pubmed: 24916030
Nature. 2018 May;557(7705):418-423
pubmed: 29743673
J Virol. 2012 Sep;86(17):9510-3
pubmed: 22718817
Nature. 2013 Apr 18;496(7445):367-71
pubmed: 23542590
World J Virol. 2015 Nov 12;4(4):313-22
pubmed: 26568914
Curr Opin Virol. 2016 Feb;16:86-94
pubmed: 26897577
PLoS One. 2015 Apr 23;10(4):e0122102
pubmed: 25906163
Ann Hepatol. 2019 Jul - Aug;18(4):571-577
pubmed: 31080055
PLoS One. 2018 Jun 7;13(6):e0198045
pubmed: 29879148
Virology. 1991 Nov;185(1):120-31
pubmed: 1926770
BMC Infect Dis. 2019 Mar 19;19(1):269
pubmed: 30890143
Philos Trans R Soc Lond B Biol Sci. 2013 Aug 12;368(1626):20130168
pubmed: 23938759
Natl Med J India. 2013 Nov-Dec;26(6):362-77
pubmed: 25074004
J Virol. 2015 Jun;89(11):5876-82
pubmed: 25787289
Genes (Basel). 2018 Oct 15;9(10):null
pubmed: 30326600
Hepatol Commun. 2018 Nov 30;3(1):160-172
pubmed: 30620002
Curr Biol. 2016 Dec 19;26(24):3407-3412
pubmed: 27939314
Mol Biol Evol. 2011 Dec;28(12):3355-65
pubmed: 21705379
J Infect Dis. 1980 May;141(5):590-602
pubmed: 6989929
Virol J. 2018 Oct 23;15(1):163
pubmed: 30352598
Mol Biol Evol. 2019 Aug 1;36(8):1793-1803
pubmed: 31004175
Cold Spring Harb Perspect Med. 2018 Dec 3;8(12):
pubmed: 29610146
Nature. 2015 Jan 1;517(7532):85-88
pubmed: 25327248
Front Microbiol. 2018 May 01;9:854
pubmed: 29765366
J Infect Dis. 2018 Feb 14;217(5):785-789
pubmed: 29186448
J Infect Dis. 2018 Oct 20;218(11):1722-1729
pubmed: 29982508
PLoS Pathog. 2013 Feb;9(2):e1003159
pubmed: 23408889
J Virol. 2013 Jun;87(12):7039-45
pubmed: 23596293
Cold Spring Harb Perspect Med. 2016 Jan 04;6(1):a021360
pubmed: 26729756
Int J Infect Dis. 2016 Aug;49:47-58
pubmed: 27270138
J Virol. 2012 Jun;86(11):6171-8
pubmed: 22491452
Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11608-13
pubmed: 21610165
Emerg Microbes Infect. 2018 Feb 7;7(1):11
pubmed: 29410449
Mol Phylogenet Evol. 2015 Dec;93:44-54
pubmed: 26220838
PLoS Pathog. 2018 Jan 4;14(1):e1006750
pubmed: 29300782
Euro Surveill. 2018 Oct;23(41):
pubmed: 30326991
J Med Virol. 2017 Jun;89(6):1015-1024
pubmed: 27805272
J Hepatol. 2018 Jun;68(6):1114-1122
pubmed: 29428874
Am J Epidemiol. 1977 Feb;105(2):140-7
pubmed: 189600
Antivir Ther. 2013;18(3 Pt B):459-65
pubmed: 23792558
Nat Rev Microbiol. 2019 May;17(5):321-328
pubmed: 30518814
J Virol. 2017 Apr 13;91(9):
pubmed: 28202767
Proc Natl Acad Sci U S A. 2015 Dec 8;112(49):15190-5
pubmed: 26575627
J Virol. 2012 Jul;86(14):7688-91
pubmed: 22553337
J Hepatol. 2017 Sep 5;:null
pubmed: 28887164
Elife. 2018 May 10;7:
pubmed: 29745896
Viruses. 2016 Oct 03;8(10):
pubmed: 27706110
J Virol. 2016 Dec 16;91(1):
pubmed: 27795428
Intervirology. 1995;38(1-2):24-34
pubmed: 8666521
Antiviral Res. 2015 Mar;115:83-93
pubmed: 25545071
Cell Host Microbe. 2017 Sep 13;22(3):387-399.e6
pubmed: 28867387
J Virol. 2000 May;74(9):4253-7
pubmed: 10756039
J Gen Virol. 1997 Feb;78 ( Pt 2):321-8
pubmed: 9018053
J Infect Dis. 2000 Sep;182(3):698-707
pubmed: 10950762
Microbiol Resour Announc. 2019 Jan 3;8(1):null
pubmed: 30637389
Intervirology. 2018;61(3):105-110
pubmed: 30278455
J Gen Virol. 2014 Jul;95(Pt 7):1479-87
pubmed: 24718832
Hepatology. 2012 Nov;56(5):1671-80
pubmed: 22610996
Lancet. 1970 Apr 4;1(7649):695-8
pubmed: 4190997
Acta Vet Scand. 2018 Feb 23;60(1):13
pubmed: 29471843
Vet Res. 2017 Nov 21;48(1):78
pubmed: 29157309
Food Microbiol. 2019 Sep;82:194-201
pubmed: 31027773
J Hepatol. 2016 Dec;65(6):1104-1111
pubmed: 27449916
J Virol. 2016 Jul 27;90(16):7184-95
pubmed: 27252529
Lancet Infect Dis. 2005 Sep;5(9):558-67
pubmed: 16122679
Emerg Infect Dis. 2011 Nov;17(11):2018-25
pubmed: 22099089
Hepatology. 2015 Jan;61(1):77-87
pubmed: 25069599
Emerg Infect Dis. 2017 Jul;23(7):1191-1193
pubmed: 28628452
Sci Rep. 2016 Feb 29;6:22361
pubmed: 26924426
J Gen Virol. 2014 Mar;95(Pt 3):557-70
pubmed: 24296469
Semin Cancer Biol. 2013 Dec;23(6 Pt B):561-75
pubmed: 24013024
Hepatology. 2017 Dec;66(6):1826-1841
pubmed: 28992360
J Gen Virol. 2014 Aug;95(Pt 8):1677-88
pubmed: 24795446
PLoS One. 2010 Jul 19;5(7):e11615
pubmed: 20657838
J Virol. 2009 Oct;83(20):10538-47
pubmed: 19640977
Int J Parasitol. 2007 Jul;37(8-9):839-49
pubmed: 17521655
PLoS One. 2016 Jul 06;11(7):e0158523
pubmed: 27384523
Proc Natl Acad Sci U S A. 2018 Jul 17;115(29):7557-7562
pubmed: 29967156
J Viral Hepat. 2018 Jul;25(7):860-869
pubmed: 29406571
World J Gastroenterol. 2014 Jun 28;20(24):7622-34
pubmed: 24976700
Virology. 1994 Feb;198(2):489-503
pubmed: 8291231
Science. 1989 Apr 21;244(4902):359-62
pubmed: 2523562
Gastroenterology. 2016 Feb;150(2):355-7.e3
pubmed: 26551551
PLoS One. 2014 Feb 28;9(2):e89055
pubmed: 24586500
J Virol. 2018 Jun 13;92(13):
pubmed: 29695421
Euro Surveill. 2019 Mar;24(10):null
pubmed: 30862337
Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6044-9
pubmed: 21444824