Predicting and Experimentally Validating Hot-Spot Residues at Protein-Protein Interfaces.
Amino Acids
/ chemistry
Animals
Humans
Magnetic Resonance Spectroscopy
Mice
Molecular Dynamics Simulation
Mutagenesis, Site-Directed
/ methods
Myeloid Cell Leukemia Sequence 1 Protein
/ chemistry
Nerve Tissue Proteins
/ chemistry
Protein Binding
Protein Multimerization
Proteins
/ chemistry
Rats
SAP90-PSD95 Associated Proteins
/ chemistry
Small Ubiquitin-Related Modifier Proteins
/ chemistry
Journal
ACS chemical biology
ISSN: 1554-8937
Titre abrégé: ACS Chem Biol
Pays: United States
ID NLM: 101282906
Informations de publication
Date de publication:
18 10 2019
18 10 2019
Historique:
pubmed:
17
9
2019
medline:
9
4
2020
entrez:
17
9
2019
Statut:
ppublish
Résumé
Protein-protein interactions (PPIs) are vital to all biological processes. These interactions are often dynamic, sometimes transient, typically occur over large topographically shallow protein surfaces, and can exhibit a broad range of affinities. Considerable progress has been made in determining PPI structures. However, given the above properties, understanding the key determinants of their thermodynamic stability remains a challenge in chemical biology. An improved ability to identify and engineer PPIs would advance understanding of biological mechanisms and mutant phenotypes and also provide a firmer foundation for inhibitor design.
Identifiants
pubmed: 31525028
doi: 10.1021/acschembio.9b00560
pmc: PMC6804253
doi:
Substances chimiques
Amino Acids
0
Mcl1 protein, mouse
0
Myeloid Cell Leukemia Sequence 1 Protein
0
Nerve Tissue Proteins
0
Proteins
0
SAP90-PSD95 Associated Proteins
0
Small Ubiquitin-Related Modifier Proteins
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2252-2263Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L01386X/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 097827/Z/11/A
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT094232M
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 094232/Z/10/Z
Pays : United Kingdom
Références
Protein Eng Des Sel. 2011 Jan;24(1-2):197-207
pubmed: 20656696
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W265-9
pubmed: 18539611
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W402-6
pubmed: 20444871
Nat Rev Mol Cell Biol. 2010 Dec;11(12):861-71
pubmed: 21102611
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W290-5
pubmed: 24852252
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W526-31
pubmed: 15215442
PLoS Comput Biol. 2014 Apr 17;10(4):e1003585
pubmed: 24743773
Lancet Oncol. 2012 Nov;13(11):1133-40
pubmed: 23084521
Mol Cell. 2014 Jul 17;55(2):161-9
pubmed: 25038412
Nat Rev Mol Cell Biol. 2014 Jan;15(1):49-63
pubmed: 24355989
J Chem Inf Model. 2017 Nov 27;57(11):2885-2895
pubmed: 29016132
Nat Med. 2013 Feb;19(2):202-8
pubmed: 23291630
Nat Chem Biol. 2010 Dec;6(12):861-3
pubmed: 21079589
Chem Soc Rev. 2011 Mar;40(3):1337-46
pubmed: 21152581
Int J High Perform Comput Appl. 2015 May;29(2):119-134
pubmed: 25972727
Nat Rev Neurosci. 2017 Mar;18(3):147-157
pubmed: 28179641
Nat Chem Biol. 2016 Apr;12(4):275-81
pubmed: 26900867
J Comput Chem. 2010 Jun;31(8):1569-82
pubmed: 20033914
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W382-8
pubmed: 15980494
J Chem Theory Comput. 2015 Feb 10;11(2):609-22
pubmed: 25866491
J Am Chem Soc. 2011 Sep 14;133(36):14220-3
pubmed: 21846146
J Biol Chem. 2012 Jan 27;287(5):3231-40
pubmed: 22147707
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
pubmed: 10592235
J Chem Theory Comput. 2011 Sep 13;7(9):3001-3011
pubmed: 22046108
Bioinformatics. 2013 Nov 1;29(21):2806-7
pubmed: 23958730
ACS Chem Biol. 2012 Aug 17;7(8):1311-20
pubmed: 22725693
Proteins. 2014 Oct;82(10):2681-90
pubmed: 24975440
Sci STKE. 2004 Feb 03;2004(219):pl2
pubmed: 14872095
J Biol Chem. 2003 Nov 28;278(48):48099-104
pubmed: 12954649
Cancer Cell. 2017 Jul 10;32(1):9-25
pubmed: 28697345
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W333-9
pubmed: 23723246
Chem Sci. 2017 Jul 1;8(7):5166-5171
pubmed: 28970902
J Mol Biol. 2002 Jul 5;320(2):369-87
pubmed: 12079393
PLoS Comput Biol. 2015 Oct 27;11(10):e1004494
pubmed: 26506533
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D204-6
pubmed: 16381846
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W480-6
pubmed: 20511591
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D120-1
pubmed: 14681373
J Comput Chem. 2007 Feb;28(3):644-54
pubmed: 17195156
Elife. 2015 Jul 20;4:e07454
pubmed: 26193119
J Phys Chem B. 2018 May 31;122(21):5389-5399
pubmed: 29401388
Science. 1989 Jun 2;244(4908):1081-5
pubmed: 2471267
Angew Chem Int Ed Engl. 2015 Jul 27;54(31):8896-927
pubmed: 26119925
Nat Rev Drug Discov. 2002 Sep;1(9):727-30
pubmed: 12209152
Nat Rev Drug Discov. 2015 Jul;14(7):475-86
pubmed: 26091267
Nat Methods. 2009 Jan;6(1):3-4
pubmed: 19116609
J Am Chem Soc. 2016 May 4;138(17):5722-8
pubmed: 27058988
Chem Sci. 2018 Aug 7;9(39):7656-7665
pubmed: 30393526
Chem Rev. 2014 May 14;114(9):4695-748
pubmed: 24735440
Chem Sci. 2017 Jun 1;8(6):4188-4202
pubmed: 28878873
Chem Biol. 2014 Sep 18;21(9):1102-14
pubmed: 25237857
Acc Chem Res. 2017 Mar 21;50(3):584-589
pubmed: 28945413
Chem Soc Rev. 2011 Aug;40(8):4307-17
pubmed: 21483947
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14116-21
pubmed: 12381794
Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9882-9887
pubmed: 28847960
Curr Opin Chem Biol. 2013 Dec;17(6):952-9
pubmed: 24183815
ACS Chem Biol. 2014 Aug 15;9(8):1747-54
pubmed: 24870802
Science. 1995 Jan 20;267(5196):383-6
pubmed: 7529940
Nat Rev Drug Discov. 2016 Aug;15(8):533-50
pubmed: 27050677
Curr Opin Struct Biol. 2002 Feb;12(1):14-20
pubmed: 11839484
Bioinformatics. 2014 Feb 01;30(3):335-42
pubmed: 24281696
Nat Chem. 2013 Mar;5(3):161-73
pubmed: 23422557
J Am Chem Soc. 2014 Apr 9;136(14):5197-200
pubmed: 24654952
Nat Rev Mol Cell Biol. 2015 Jan;16(1):18-29
pubmed: 25531225
Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6217-22
pubmed: 17389404
Bioinformatics. 2012 Oct 15;28(20):2600-7
pubmed: 22859501
Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):10959-10964
pubmed: 30301798