Predicting and Experimentally Validating Hot-Spot Residues at Protein-Protein Interfaces.


Journal

ACS chemical biology
ISSN: 1554-8937
Titre abrégé: ACS Chem Biol
Pays: United States
ID NLM: 101282906

Informations de publication

Date de publication:
18 10 2019
Historique:
pubmed: 17 9 2019
medline: 9 4 2020
entrez: 17 9 2019
Statut: ppublish

Résumé

Protein-protein interactions (PPIs) are vital to all biological processes. These interactions are often dynamic, sometimes transient, typically occur over large topographically shallow protein surfaces, and can exhibit a broad range of affinities. Considerable progress has been made in determining PPI structures. However, given the above properties, understanding the key determinants of their thermodynamic stability remains a challenge in chemical biology. An improved ability to identify and engineer PPIs would advance understanding of biological mechanisms and mutant phenotypes and also provide a firmer foundation for inhibitor design.

Identifiants

pubmed: 31525028
doi: 10.1021/acschembio.9b00560
pmc: PMC6804253
doi:

Substances chimiques

Amino Acids 0
Mcl1 protein, mouse 0
Myeloid Cell Leukemia Sequence 1 Protein 0
Nerve Tissue Proteins 0
Proteins 0
SAP90-PSD95 Associated Proteins 0
Small Ubiquitin-Related Modifier Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

2252-2263

Subventions

Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L01386X/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 097827/Z/11/A
Pays : United Kingdom
Organisme : Wellcome Trust
ID : WT094232M
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 094232/Z/10/Z
Pays : United Kingdom

Références

Protein Eng Des Sel. 2011 Jan;24(1-2):197-207
pubmed: 20656696
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W265-9
pubmed: 18539611
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W402-6
pubmed: 20444871
Nat Rev Mol Cell Biol. 2010 Dec;11(12):861-71
pubmed: 21102611
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W290-5
pubmed: 24852252
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W526-31
pubmed: 15215442
PLoS Comput Biol. 2014 Apr 17;10(4):e1003585
pubmed: 24743773
Lancet Oncol. 2012 Nov;13(11):1133-40
pubmed: 23084521
Mol Cell. 2014 Jul 17;55(2):161-9
pubmed: 25038412
Nat Rev Mol Cell Biol. 2014 Jan;15(1):49-63
pubmed: 24355989
J Chem Inf Model. 2017 Nov 27;57(11):2885-2895
pubmed: 29016132
Nat Med. 2013 Feb;19(2):202-8
pubmed: 23291630
Nat Chem Biol. 2010 Dec;6(12):861-3
pubmed: 21079589
Chem Soc Rev. 2011 Mar;40(3):1337-46
pubmed: 21152581
Int J High Perform Comput Appl. 2015 May;29(2):119-134
pubmed: 25972727
Nat Rev Neurosci. 2017 Mar;18(3):147-157
pubmed: 28179641
Nat Chem Biol. 2016 Apr;12(4):275-81
pubmed: 26900867
J Comput Chem. 2010 Jun;31(8):1569-82
pubmed: 20033914
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W382-8
pubmed: 15980494
J Chem Theory Comput. 2015 Feb 10;11(2):609-22
pubmed: 25866491
J Am Chem Soc. 2011 Sep 14;133(36):14220-3
pubmed: 21846146
J Biol Chem. 2012 Jan 27;287(5):3231-40
pubmed: 22147707
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
pubmed: 10592235
J Chem Theory Comput. 2011 Sep 13;7(9):3001-3011
pubmed: 22046108
Bioinformatics. 2013 Nov 1;29(21):2806-7
pubmed: 23958730
ACS Chem Biol. 2012 Aug 17;7(8):1311-20
pubmed: 22725693
Proteins. 2014 Oct;82(10):2681-90
pubmed: 24975440
Sci STKE. 2004 Feb 03;2004(219):pl2
pubmed: 14872095
J Biol Chem. 2003 Nov 28;278(48):48099-104
pubmed: 12954649
Cancer Cell. 2017 Jul 10;32(1):9-25
pubmed: 28697345
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W333-9
pubmed: 23723246
Chem Sci. 2017 Jul 1;8(7):5166-5171
pubmed: 28970902
J Mol Biol. 2002 Jul 5;320(2):369-87
pubmed: 12079393
PLoS Comput Biol. 2015 Oct 27;11(10):e1004494
pubmed: 26506533
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D204-6
pubmed: 16381846
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W480-6
pubmed: 20511591
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D120-1
pubmed: 14681373
J Comput Chem. 2007 Feb;28(3):644-54
pubmed: 17195156
Elife. 2015 Jul 20;4:e07454
pubmed: 26193119
J Phys Chem B. 2018 May 31;122(21):5389-5399
pubmed: 29401388
Science. 1989 Jun 2;244(4908):1081-5
pubmed: 2471267
Angew Chem Int Ed Engl. 2015 Jul 27;54(31):8896-927
pubmed: 26119925
Nat Rev Drug Discov. 2002 Sep;1(9):727-30
pubmed: 12209152
Nat Rev Drug Discov. 2015 Jul;14(7):475-86
pubmed: 26091267
Nat Methods. 2009 Jan;6(1):3-4
pubmed: 19116609
J Am Chem Soc. 2016 May 4;138(17):5722-8
pubmed: 27058988
Chem Sci. 2018 Aug 7;9(39):7656-7665
pubmed: 30393526
Chem Rev. 2014 May 14;114(9):4695-748
pubmed: 24735440
Chem Sci. 2017 Jun 1;8(6):4188-4202
pubmed: 28878873
Chem Biol. 2014 Sep 18;21(9):1102-14
pubmed: 25237857
Acc Chem Res. 2017 Mar 21;50(3):584-589
pubmed: 28945413
Chem Soc Rev. 2011 Aug;40(8):4307-17
pubmed: 21483947
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14116-21
pubmed: 12381794
Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9882-9887
pubmed: 28847960
Curr Opin Chem Biol. 2013 Dec;17(6):952-9
pubmed: 24183815
ACS Chem Biol. 2014 Aug 15;9(8):1747-54
pubmed: 24870802
Science. 1995 Jan 20;267(5196):383-6
pubmed: 7529940
Nat Rev Drug Discov. 2016 Aug;15(8):533-50
pubmed: 27050677
Curr Opin Struct Biol. 2002 Feb;12(1):14-20
pubmed: 11839484
Bioinformatics. 2014 Feb 01;30(3):335-42
pubmed: 24281696
Nat Chem. 2013 Mar;5(3):161-73
pubmed: 23422557
J Am Chem Soc. 2014 Apr 9;136(14):5197-200
pubmed: 24654952
Nat Rev Mol Cell Biol. 2015 Jan;16(1):18-29
pubmed: 25531225
Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6217-22
pubmed: 17389404
Bioinformatics. 2012 Oct 15;28(20):2600-7
pubmed: 22859501
Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):10959-10964
pubmed: 30301798

Auteurs

Amaurys A Ibarra (AA)

School of Biochemistry , University of Bristol , Medical Sciences Building, University Walk , Bristol BS8 1TD , U.K.

Gail J Bartlett (GJ)

School of Chemistry , University of Bristol , Cantock's Close , Bristol BS8 1TS , U.K.

Zsöfia Hegedüs (Z)

School of Chemistry , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Som Dutt (S)

School of Chemistry , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Fruzsina Hobor (F)

Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
School of Molecular and Cellular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Katherine A Horner (KA)

School of Chemistry , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Kristina Hetherington (K)

School of Chemistry , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Kirstin Spence (K)

Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
School of Molecular and Cellular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Adam Nelson (A)

School of Chemistry , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Thomas A Edwards (TA)

Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
School of Molecular and Cellular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Derek N Woolfson (DN)

School of Biochemistry , University of Bristol , Medical Sciences Building, University Walk , Bristol BS8 1TD , U.K.
School of Chemistry , University of Bristol , Cantock's Close , Bristol BS8 1TS , U.K.
BrisSynBio , University of Bristol , Life Sciences Building, Tyndall Avenue , Bristol BS8 1TQ , U.K.

Richard B Sessions (RB)

School of Biochemistry , University of Bristol , Medical Sciences Building, University Walk , Bristol BS8 1TD , U.K.
BrisSynBio , University of Bristol , Life Sciences Building, Tyndall Avenue , Bristol BS8 1TQ , U.K.

Andrew J Wilson (AJ)

School of Chemistry , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.
Astbury Centre for Structural Molecular Biology , University of Leeds , Woodhouse Lane , Leeds LS2 9JT , U.K.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH