Critical Assessment in Routine Clinical Practice of Liquid Biopsy for EGFR Status Testing in Non-Small-Cell Lung Cancer: A Single-Laboratory Experience (LPCE, Nice, France).


Journal

Clinical lung cancer
ISSN: 1938-0690
Titre abrégé: Clin Lung Cancer
Pays: United States
ID NLM: 100893225

Informations de publication

Date de publication:
01 2020
Historique:
received: 11 04 2019
revised: 08 06 2019
accepted: 25 07 2019
pubmed: 15 9 2019
medline: 2 4 2021
entrez: 15 9 2019
Statut: ppublish

Résumé

The introduction of liquid biopsy using PCR-based assays into routine practice has had a strong impact on the treatment of EGFR-mutated lung adenocarcinoma and is now commonly used for routine testing of EGFR mutations in certain clinical settings. To assess whether the claimed benefits of PCR-based assays hold true in daily practice at a multicenter clinical institution, we assessed how treatment decisions are affected by PCR-based assays for the analysis of EGFR mutations from plasma samples in a centralized laboratory (LPCE, Nice, France). A total of 345 samples were analyzed using the US Food and Drug Administration-approved Cobas EGFR Mutation Test v2 and 103 using the Therascreen EGFR Plasma RGQ PCR Kit over 3 years (395 samples from 324 patients). Eleven plasma samples were validated independently using Cobas at 3 institutions, and 130 samples were analyzed using Stilla digital PCR. Clinical data were collected for 175 (54%) of 324 patients. Cobas was superior to the Therascreen assay and demonstrated 100% reproducibility. Digital PCR showed only 48%, 83%, and 58% concordance with Cobas for exon 19 deletions, L858R mutations, and T790M mutations, respectively. Liquid biopsies helped inform and change treatment when resistance occurred and enabled the detection of EGFR mutations in patients when biopsy tissue results were unavailable. PCR-based assays are a fast and convenient test, allowing the detection of primary and secondary EGFR mutations from plasma. Cobas proved to be a reliable test, whereas digital PCR produced too many inconclusive results to be currently recommended as a principal testing device.

Sections du résumé

BACKGROUND
The introduction of liquid biopsy using PCR-based assays into routine practice has had a strong impact on the treatment of EGFR-mutated lung adenocarcinoma and is now commonly used for routine testing of EGFR mutations in certain clinical settings. To assess whether the claimed benefits of PCR-based assays hold true in daily practice at a multicenter clinical institution, we assessed how treatment decisions are affected by PCR-based assays for the analysis of EGFR mutations from plasma samples in a centralized laboratory (LPCE, Nice, France).
PATIENTS AND METHODS
A total of 345 samples were analyzed using the US Food and Drug Administration-approved Cobas EGFR Mutation Test v2 and 103 using the Therascreen EGFR Plasma RGQ PCR Kit over 3 years (395 samples from 324 patients). Eleven plasma samples were validated independently using Cobas at 3 institutions, and 130 samples were analyzed using Stilla digital PCR. Clinical data were collected for 175 (54%) of 324 patients.
RESULTS
Cobas was superior to the Therascreen assay and demonstrated 100% reproducibility. Digital PCR showed only 48%, 83%, and 58% concordance with Cobas for exon 19 deletions, L858R mutations, and T790M mutations, respectively. Liquid biopsies helped inform and change treatment when resistance occurred and enabled the detection of EGFR mutations in patients when biopsy tissue results were unavailable.
CONCLUSION
PCR-based assays are a fast and convenient test, allowing the detection of primary and secondary EGFR mutations from plasma. Cobas proved to be a reliable test, whereas digital PCR produced too many inconclusive results to be currently recommended as a principal testing device.

Identifiants

pubmed: 31519454
pii: S1525-7304(19)30214-1
doi: 10.1016/j.cllc.2019.07.010
pii:
doi:

Substances chimiques

EGFR protein, human EC 2.7.10.1
ErbB Receptors EC 2.7.10.1

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

56-65.e8

Informations de copyright

Copyright © 2019 Elsevier Inc. All rights reserved.

Auteurs

Simon Heeke (S)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France.

Jonathan Benzaquen (J)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Department of Pulmonary Medicine and Oncology, Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Véronique Hofman (V)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France; Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France.

Marius Ilié (M)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France; Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France.

Maryline Allegra (M)

Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Elodie Long-Mira (E)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France; Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France.

Sandra Lassalle (S)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France; Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France.

Virginie Tanga (V)

Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Carole Salacroup (C)

Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France.

Christelle Bonnetaud (C)

Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France.

Julien Fayada (J)

Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Loïc Gazoppi (L)

Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Lydia Ribeyre (L)

Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Olivier Castelnau (O)

Respiratory Diseases Department, Arnault Tzanck Institute, Saint-Laurent du Var, France.

Georges Garnier (G)

Hematology-Oncology, CH Princess Grace, Monaco, Monaco.

Florian Cattet (F)

Anesthesia Department, Parc Imperial Private Hospital, Nice, France.

Isabelle Nanni (I)

Department of Molecular Oncology, Assistance Publique Hôpitaux de Marseille, Marseille, France.

Florence de Fraipont (F)

Unité de Génétique Moléculaire, Maladies Héréditaires et Oncologie, CHU Grenoble Alpes, CS10217, Grenoble, France.

Charlotte Cohen (C)

Department of Thoracic Surgery, Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Jean-Philippe Berthet (JP)

Department of Thoracic Surgery, Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Sylvie Leroy (S)

Department of Pulmonary Medicine and Oncology, Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Michel Poudenx (M)

Medical Center, Centre Antoine Lacassagne, Nice, France.

Charles Hugo Marquette (CH)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Department of Pulmonary Medicine and Oncology, Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France.

Marc G Denis (MG)

Laboratoire de Biochimie et Plateforme de Génétique Moléculaire des Cancers, CHU Nantes, Nantes, France; Centre de Recherche en Cancérologie et Immunologie, CRCINA, INSERM U1232, Nantes, France.

Fabrice Barlesi (F)

Aix-Marseille Université, CRCM, INSERM, CNRS, APHM, Multidisciplinary Oncology and Therapeutic Innovations Department, Chemin des Bourrely, Marseille, France.

Paul Hofman (P)

Institute of Research on Cancer and Ageing of Nice (IRCAN), Inserm U1081, CNRS UMR7284, Team 4, Université Côte d'Azur, CHU de Nice, Nice, France; Laboratory of Clinical and Experimental Pathology (LPCE), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Nice, France; Hospital-Integrated Biobank (BB-0033-00025), Université Côte d'Azur, CHU de Nice, University Hospital Federation OncoAge, Hospital-Integrated Biobank (BB-0033-00025), Nice, France. Electronic address: hofman.p@chu-nice.fr.

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Classifications MeSH