Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields.


Journal

Chemical reviews
ISSN: 1520-6890
Titre abrégé: Chem Rev
Pays: United States
ID NLM: 2985134R

Informations de publication

Date de publication:
10 07 2019
Historique:
pubmed: 30 5 2019
medline: 18 7 2020
entrez: 30 5 2019
Statut: ppublish

Résumé

Many applications in chemistry, biology, and energy storage/conversion research rely on molecular simulations to provide fundamental insight into structural and transport properties of materials with high ionic concentrations. Whether the system is comprised entirely of ions, like ionic liquids, or is a mixture of a polar solvent with a salt, e.g., liquid electrolytes for battery applications, the presence of ions in these materials results in strong local electric fields polarizing solvent molecules and large ions. To predict properties of such systems from molecular simulations often requires either explicit or mean-field inclusion of the influence of polarization on electrostatic interactions. In this manuscript, we review the pros and cons of different treatments of polarization ranging from the mean-field approaches to the most popular explicit polarization models in molecular dynamics simulations of ionic materials. For each method, we discuss their advantages and disadvantages and emphasize key assumptions as well as their adjustable parameters. Strategies for the development of polarizable models are presented with a specific focus on extracting atomic polarizabilities. Finally, we compare simulations using polarizable and nonpolarizable models for several classes of ionic systems, discussing the underlying physics that each approach includes or ignores, implications for implementation and computational efficiency, and the accuracy of properties predicted by these methods compared to experiments.

Identifiants

pubmed: 31141351
doi: 10.1021/acs.chemrev.8b00763
pmc: PMC6620131
mid: NIHMS1026665
doi:

Substances chimiques

Anions 0
Cations 0
Electrolytes 0
Ionic Liquids 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

7940-7995

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM051501
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM070855
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM072558
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM131710
Pays : United States

Références

J Comput Chem. 2005 Jul 30;26(10):1052-62
pubmed: 15898112
J Chem Phys. 2013 May 28;138(20):204507
pubmed: 23742493
J Phys Chem B. 2015 Aug 27;119(34):11041-51
pubmed: 25905727
J Phys Chem B. 2007 Nov 15;111(45):12941-4
pubmed: 17958354
J Phys Chem B. 2005 Oct 6;109(39):18591-9
pubmed: 16853393
J Chem Phys. 2017 Mar 21;146(11):114103
pubmed: 28330355
Phys Chem Chem Phys. 2016 Nov 9;18(44):30323-30333
pubmed: 27828553
J Chem Phys. 2015 Nov 7;143(17):174104
pubmed: 26547155
J Chem Phys. 2006 Feb 21;124(7):74505
pubmed: 16497055
Phys Chem Chem Phys. 2005 Jul 21;7(14):2771-9
pubmed: 16189592
J Phys Chem B. 2014 Jul 3;118(26):7367-75
pubmed: 24905999
Phys Chem Chem Phys. 2018 Mar 28;20(13):8554-8563
pubmed: 29542743
J Comput Chem. 2017 Mar 30;38(8):508-517
pubmed: 28133840
J Phys Chem B. 2007 Jun 28;111(25):7078-84
pubmed: 17552552
J Phys Chem Lett. 2015 Jan 2;6(1):212-6
pubmed: 25580188
Acc Chem Res. 2017 Dec 19;50(12):2886-2894
pubmed: 29164857
J Phys Chem B. 2015 Mar 26;119(12):4428-40
pubmed: 25751286
J Chem Theory Comput. 2010 Jul 13;6(7):2059-2070
pubmed: 21116445
J Chem Theory Comput. 2013 Aug 13;9(8):
pubmed: 24223528
J Chem Phys. 2010 Jan 7;132(1):014309
pubmed: 20078163
J Phys Chem B. 2009 Aug 20;113(33):11463-78
pubmed: 19637900
J Am Chem Soc. 2003 Dec 17;125(50):15671-82
pubmed: 14664617
Chemphyschem. 2007 Dec 3;8(17):2464-70
pubmed: 17943710
Phys Chem Chem Phys. 2008 Oct 1;10(37):5765-75
pubmed: 18956113
J Phys Chem B. 2006 Mar 16;110(10):4971-7
pubmed: 16526738
Chem Rev. 2014 Mar 12;114(5):2978-3036
pubmed: 24588221
J Phys Chem B. 2018 Apr 5;122(13):3296-3306
pubmed: 29116789
J Chem Phys. 2017 Oct 28;147(16):161724
pubmed: 29096518
J Chem Theory Comput. 2010 Oct 12;6(10):3233-40
pubmed: 26616785
J Phys Chem B. 2007 May 10;111(18):4659-68
pubmed: 17474694
J Chem Theory Comput. 2016 Jan 12;12(1):9-17
pubmed: 26616475
Chem Rev. 2002 Aug;102(8):2651-70
pubmed: 12175263
J Phys Chem B. 2006 Jul 27;110(29):14444-51
pubmed: 16854154
J Chem Theory Comput. 2005 Jan;1(1):153-68
pubmed: 26641126
J Chem Phys. 2016 Nov 28;145(20):204507
pubmed: 27908097
Nat Mater. 2009 Aug;8(8):621-9
pubmed: 19629083
Phys Chem Chem Phys. 2011 Oct 6;13(37):16666-79
pubmed: 21850319
J Phys Chem B. 2006 Feb 16;110(6):2862-8
pubmed: 16471896
J Chem Phys. 2012 Mar 21;136(11):114507
pubmed: 22443777
Nat Mater. 2012 Mar 04;11(4):306-10
pubmed: 22388172
J Phys Chem B. 2006 Mar 30;110(12):6279-92
pubmed: 16553446
ACS Nano. 2017 Oct 24;11(10):10462-10471
pubmed: 29016112
J Phys Condens Matter. 2016 Nov 23;28(46):464002
pubmed: 27623976
J Chem Theory Comput. 2018 Jun 12;14(6):3121-3131
pubmed: 29694035
J Phys Chem B. 2006 Jun 15;110(23):11481-90
pubmed: 16771423
Phys Chem Chem Phys. 2018 Feb 14;20(7):5246-5255
pubmed: 29400383
J Phys Chem B. 2011 Mar 31;115(12):3073-84
pubmed: 21384838
J Chem Theory Comput. 2011 Oct 11;7(10):3040-4
pubmed: 26598146
J Chem Phys. 2010 Apr 7;132(13):134512
pubmed: 20387946
J Chem Theory Comput. 2010;6(1):190-202
pubmed: 20209077
J Phys Chem B. 2006 Nov 30;110(47):24266-74
pubmed: 17125400
Phys Chem Chem Phys. 2013 Oct 14;15(38):15781-92
pubmed: 23985966
J Phys Condens Matter. 2009 Aug 19;21(33):333102
pubmed: 21828594
J Chem Phys. 2018 Oct 28;149(16):163319
pubmed: 30384758
Wiley Interdiscip Rev Comput Mol Sci. 2012 Jan;2(1):167-185
pubmed: 23066428
Faraday Discuss. 2012;154:409-24; discussion 439-64, 465-71
pubmed: 22455033
J Chem Phys. 2014 May 14;140(18):184101
pubmed: 24832247
J Phys Condens Matter. 2016 Nov 23;28(46):464006
pubmed: 27624573
J Chem Theory Comput. 2016 Aug 9;12(8):3654-61
pubmed: 27340904
J Chem Phys. 2006 May 14;124(18):184109
pubmed: 16709099
J Chem Phys. 2017 Oct 28;147(16):161731
pubmed: 29096446
J Chem Phys. 2013 May 28;138(20):204119
pubmed: 23742466
J Chem Phys. 2008 Jun 7;128(21):214903
pubmed: 18537447
J Comput Chem. 2010 Mar;31(4):671-90
pubmed: 19575467
Phys Chem Chem Phys. 2019 Jan 21;21(3):1023-1028
pubmed: 30601488
Phys Chem Chem Phys. 2014 Feb 14;16(6):2674-85
pubmed: 24382460
J Chem Theory Comput. 2006 Nov;2(6):1587-97
pubmed: 26627029
J Chem Inf Comput Sci. 2002 Sep-Oct;42(5):1154-63
pubmed: 12377003
J Chem Theory Comput. 2013 Nov 12;9(11):5086-97
pubmed: 26583423
J Phys Chem A. 2007 Aug 23;111(33):8170-6
pubmed: 17665882
J Comput Chem. 2010 Apr 15;31(5):1015-23
pubmed: 20027641
Chem Rev. 2006 Apr;106(4):1305-22
pubmed: 16608182
Phys Chem Chem Phys. 2016 Jan 21;18(3):1665-70
pubmed: 26675139
Science. 2015 Nov 20;350(6263):938-43
pubmed: 26586759
J Chem Theory Comput. 2008;4(8):1237-48
pubmed: 19221605
Phys Chem Chem Phys. 2018 Mar 28;20(13):8432-8449
pubmed: 29547221
J Chem Phys. 2017 Oct 28;147(16):164104
pubmed: 29096477
J Phys Chem B. 2014 Sep 25;118(38):11295-309
pubmed: 25159701
J Chem Phys. 2013 Aug 28;139(8):084509
pubmed: 24007020
J Phys Chem B. 2006 Nov 23;110(46):23515-23
pubmed: 17107207
J Phys Chem B. 2006 Feb 23;110(7):3330-5
pubmed: 16494347
J Phys Chem B. 2014 Feb 13;118(6):1589-602
pubmed: 24437570
J Comput Chem. 2008 Sep;29(12):2033-8
pubmed: 18432620
J Chem Phys. 2018 May 21;148(19):193813
pubmed: 30307212
J Chem Theory Comput. 2018 Oct 9;14(10):5273-5289
pubmed: 30176213
J Phys Chem A. 2013 Nov 21;117(46):11766-73
pubmed: 23581250
J Chem Theory Comput. 2017 Jun 13;13(6):2954-2961
pubmed: 28437096
Phys Chem Chem Phys. 2013 Feb 28;15(8):2703-11
pubmed: 23340807
J Phys Chem B. 2010 May 13;114(18):6150-5
pubmed: 20397676
J Phys Chem B. 2013 Sep 12;117(36):10572-80
pubmed: 23947568
J Phys Chem B. 2010 May 27;114(20):6886-904
pubmed: 20443608
J Phys Chem B. 2015 May 21;119(20):6242-9
pubmed: 25826190
J Chem Theory Comput. 2016 Jan 12;12(1):281-96
pubmed: 26584231
J Phys Chem B. 2006 Jul 27;110(29):14426-35
pubmed: 16854152
J Comput Chem. 2010 Sep;31(12):2330-41
pubmed: 20575015
J Phys Chem B. 2011 Jan 27;115(3):580-96
pubmed: 21166469
J Chem Theory Comput. 2014 Dec 9;10(12):5513-9
pubmed: 26583234
J Phys Chem B. 2012 Jul 19;116(28):7999-8008
pubmed: 22712654
J Am Chem Soc. 2004 Apr 28;126(16):5300-8
pubmed: 15099115
J Phys Chem B. 2006 Aug 31;110(34):16879-86
pubmed: 16927976
J Chem Theory Comput. 2011 Jan 11;7(1):138-47
pubmed: 26606227
J Phys Chem A. 2007 Nov 1;111(43):11141-6
pubmed: 17918806
Phys Chem Chem Phys. 2011 Jan 21;13(3):1152-61
pubmed: 21079823
Phys Chem Chem Phys. 2014 Jun 14;16(22):10999-1009
pubmed: 24770876
J Phys Chem Lett. 2015 May 7;6(9):1563-7
pubmed: 26263314
J Chem Phys. 2005 Jun 22;122(24):244511
pubmed: 16035786
J Chem Phys. 2011 Jan 7;134(1):014511
pubmed: 21219011
J Chem Phys. 2005 Oct 22;123(16):164107
pubmed: 16268681
J Chem Theory Comput. 2016 Aug 9;12(8):3825-50
pubmed: 27248705
J Chem Phys. 2007 Feb 28;126(8):084511
pubmed: 17343462
Chem Sci. 2017 Nov 27;9(4):956-972
pubmed: 29732110
J Phys Chem B. 2013 Aug 8;117(31):9142-60
pubmed: 23841725
J Chem Theory Comput. 2017 Jun 13;13(6):2751-2761
pubmed: 28482664
J Phys Chem B. 2008 May 15;112(19):6233-40
pubmed: 18198859
J Phys Chem B. 2009 Feb 12;113(6):1763-76
pubmed: 19146427
J Chem Theory Comput. 2007;3(6):1927-1946
pubmed: 18802495
J Am Chem Soc. 2003 Dec 17;125(50):15466-73
pubmed: 14664592
J Phys Chem B. 2009 Sep 10;113(36):12353-7
pubmed: 19689161
J Chem Phys. 2017 May 28;146(20):204501
pubmed: 28571336
J Mol Model. 2014 Oct;20(10):2471
pubmed: 25296890
J Chem Theory Comput. 2019 Jul 9;15(7):4122-4139
pubmed: 31136175
Chem Soc Rev. 2018 Feb 21;47(4):1250-1284
pubmed: 29410995
Phys Chem Chem Phys. 2012 Mar 7;14(9):3089-102
pubmed: 22287020
J Chem Theory Comput. 2018 Jul 10;14(7):3633-3642
pubmed: 29847125
J Phys Chem B. 2010 Nov 25;114(46):14965-71
pubmed: 20882993
J Phys Chem B. 2010 May 27;114(20):6786-98
pubmed: 20433203
J Phys Chem A. 2007 Nov 15;111(45):11683-700
pubmed: 17948971
PLoS Comput Biol. 2010 Jun 10;6(6):e1000810
pubmed: 20548957
J Chem Phys. 2017 Oct 28;147(16):161710
pubmed: 29096450
J Phys Chem B. 2010 Apr 22;114(15):4984-97
pubmed: 20337454
J Chem Phys. 2010 Apr 21;132(15):154112
pubmed: 20423173
Chem Rev. 2015 Jul 8;115(13):6357-426
pubmed: 26028184
J Chem Theory Comput. 2017 Sep 12;13(9):4025-4033
pubmed: 28759205
J Phys Chem B. 2015 Jul 23;119(29):9423-9437
pubmed: 25683601
J Chem Phys. 2015 Nov 21;143(19):194504
pubmed: 26590539
J Chem Theory Comput. 2007 May;3(3):824-37
pubmed: 26627402
J Chem Theory Comput. 2018 Mar 13;14(3):1471-1486
pubmed: 29357238
J Comput Chem. 2004 Oct;25(13):1584-604
pubmed: 15264253
J Phys Chem B. 2007 Aug 16;111(32):9424-7
pubmed: 17658744
Nat Commun. 2013;4:2701
pubmed: 24165568
J Phys Chem B. 2005 Mar 31;109(12):5895-902
pubmed: 16851642
J Chem Phys. 2017 Sep 14;147(10):104708
pubmed: 28915735
J Phys Chem B. 2010 Mar 4;114(8):2549-64
pubmed: 20136072
J Phys Chem B. 2014 Jun 19;118(24):6742-57
pubmed: 24874104
J Chem Phys. 2007 Oct 21;127(15):154723
pubmed: 17949207
J Phys Chem Lett. 2014 Aug 7;5(15):2670-4
pubmed: 26277961
J Chem Phys. 2016 Aug 28;145(8):084308
pubmed: 27586923
J Chem Inf Model. 2012 Dec 21;52(12):3144-54
pubmed: 23146088
J Chem Phys. 2015 Jan 14;142(2):024109
pubmed: 25591340
J Phys Chem Lett. 2011;2(2):87-92
pubmed: 21572567
J Phys Chem B. 2006 Feb 23;110(7):3308-22
pubmed: 16494345
Phys Chem Chem Phys. 2008 Nov 7;10(41):6301-12
pubmed: 18936854
J Chem Theory Comput. 2013 Dec 10;9(12):5313-26
pubmed: 26592269
J Phys Chem B. 2016 Mar 3;120(8):1833-42
pubmed: 26562223
J Chem Theory Comput. 2012 Nov 13;8(11):4527-38
pubmed: 26605612
J Chem Phys. 2018 Jun 14;148(22):222803
pubmed: 29907071
J Chem Phys. 2012 Jul 28;137(4):044511
pubmed: 22852635
Faraday Discuss. 2005;129:57-67; discussion 89-109
pubmed: 15715299
J Comput Chem. 2016 Sep 30;37(25):2260-5
pubmed: 27520590
Phys Chem Chem Phys. 2010;12(20):5468-79
pubmed: 20467670
J Phys Chem B. 2014 Dec 4;118(48):13940-5
pubmed: 25387327
J Phys Chem B. 2008 Mar 20;112(11):3509-21
pubmed: 18302362
J Phys Chem B. 2013 Aug 29;117(34):9956-72
pubmed: 23750713
J Phys Chem Lett. 2012 May 3;3(9):1124-9
pubmed: 26288046
J Phys Chem B. 2007 Oct 11;111(40):11776-85
pubmed: 17877389
J Phys Chem A. 2007 Sep 13;111(36):8753-65
pubmed: 17655284
J Phys Chem B. 2016 Mar 3;120(8):1454-60
pubmed: 26172524
J Chem Phys. 2007 Sep 21;127(11):114510
pubmed: 17887860
J Phys Chem A. 2011 Jun 30;115(25):7017-27
pubmed: 21619003
J Comput Chem. 2004 Feb;25(3):335-42
pubmed: 14696069
J Chem Phys. 2006 Aug 7;125(5):054511
pubmed: 16942230
J Phys Chem B. 2006 Feb 16;110(6):2821-32
pubmed: 16471891
J Chem Theory Comput. 2007 Nov;3(6):2128-37
pubmed: 26636206
J Chem Phys. 2007 Feb 28;126(8):084704
pubmed: 17343466
J Phys Chem B. 2014 Jun 26;118(25):7156-66
pubmed: 24901255
Phys Chem Chem Phys. 2016 Jan 7;18(1):164-75
pubmed: 26601903
J Phys Chem B. 2009 Aug 6;113(31):10641-9
pubmed: 19591511
J Chem Phys. 2008 Mar 28;128(12):124701
pubmed: 18376954
J Phys Chem Lett. 2013 Jan 17;4(2):264-8
pubmed: 26283432
Phys Chem Chem Phys. 2011 Jul 14;13(26):12240-8
pubmed: 21643580
J Comput Chem. 2006 Oct;27(13):1477-85
pubmed: 16823811
J Chem Phys. 2012 Feb 14;136(6):064518
pubmed: 22360206
J Am Chem Soc. 2010 Oct 27;132(42):14825-33
pubmed: 20925318
J Chem Theory Comput. 2013 Dec 10;9(12):5430-5449
pubmed: 24459460
PLoS Comput Biol. 2017 Jul 26;13(7):e1005659
pubmed: 28746339
J Chem Phys. 2006 Jan 14;124(2):024111
pubmed: 16422575
J Chem Phys. 2012 Apr 28;136(16):164112
pubmed: 22559475
Phys Chem Chem Phys. 2011 Nov 21;13(43):19345-54
pubmed: 21971414
J Chem Theory Comput. 2014 Apr 8;10(4):1361-5
pubmed: 26580355
Chemphyschem. 2012 May 14;13(7):1625-37
pubmed: 22344944
J Chem Theory Comput. 2018 Apr 10;14(4):2084-2108
pubmed: 29438622
J Chem Phys. 2004 Nov 15;121(19):9549-64
pubmed: 15538877
J Chem Phys. 2008 Nov 28;129(20):204102
pubmed: 19045847
J Phys Chem B. 2018 Jul 5;122(26):6823-6828
pubmed: 29902003
J Chem Phys. 2006 Mar 14;124(10):104101
pubmed: 16542062
J Chem Phys. 2010 Oct 21;133(15):154511
pubmed: 20969407
J Phys Chem B. 2010 May 27;114(20):6905-21
pubmed: 20443607
J Chem Phys. 2007 Jul 28;127(4):044505
pubmed: 17672705
J Chem Phys. 2016 May 14;144(18):184707
pubmed: 27179500
J Chem Phys. 2010 Dec 21;133(23):234101
pubmed: 21186852
J Mol Model. 2010 Mar;16(3):567-76
pubmed: 19705172
J Phys Chem B. 2009 Apr 9;113(14):4771-4
pubmed: 19275203
Nat Commun. 2015 Dec 08;6:8998
pubmed: 26643439
J Chem Phys. 2018 Sep 28;149(12):124103
pubmed: 30278683
J Chem Phys. 2005 Nov 15;123(19):194109
pubmed: 16321078
J Comput Chem. 2017 Sep 5;38(23):2047-2055
pubmed: 28600826
J Chem Phys. 2006 May 7;124(17):174506
pubmed: 16689582
J Phys Chem B. 2005 May 26;109(20):10395-405
pubmed: 16852260
Q Rev Biophys. 1978 May;11(2):179-246
pubmed: 353876
J Chem Phys. 2006 Jun 7;124(21):214108
pubmed: 16774399
J Chem Inf Model. 2016 Jan 25;56(1):260-8
pubmed: 26646769
J Phys Chem B. 2006 Mar 30;110(12):6293-9
pubmed: 16553447
Phys Chem Chem Phys. 2010 Jan 7;12(1):170-82
pubmed: 20024457
ACS Nano. 2018 Oct 23;12(10):9733-9741
pubmed: 30088913
J Chem Phys. 2017 Feb 7;146(5):054501
pubmed: 28178817
J Chem Theory Comput. 2010 Mar 1;6(4):1181-1198
pubmed: 20401166
J Phys Chem B. 2006 Jun 22;110(24):12055-61
pubmed: 16800516
J Comput Chem. 2018 Aug 5;39(21):1682-1689
pubmed: 29727037
J Phys Chem B. 2018 Apr 19;122(15):4345-4355
pubmed: 29570301
J Chem Phys. 2009 Mar 14;130(10):104507
pubmed: 19292541
J Phys Chem A. 2009 Oct 29;113(43):11570-9
pubmed: 19663490
J Phys Chem B. 2011 Feb 3;115(4):693-702
pubmed: 21171617
J Phys Chem B. 2008 Mar 13;112(10):3121-31
pubmed: 18288833
J Phys Chem A. 2015 Mar 5;119(9):1539-47
pubmed: 25120165
J Chem Theory Comput. 2014 Oct 14;10(10):4465-79
pubmed: 26588143
J Phys Chem B. 2006 Feb 2;110(4):1800-6
pubmed: 16471748
J Phys Chem Lett. 2019 May 16;10(10):2593-2599
pubmed: 31050904
J Chem Theory Comput. 2016 Jun 14;12(6):2553-68
pubmed: 27116302
J Chem Phys. 2015 Aug 21;143(7):074115
pubmed: 26298123
J Chem Theory Comput. 2018 Feb 13;14(2):1083-1098
pubmed: 29357257
J Chem Theory Comput. 2018 Nov 13;14(11):5553-5566
pubmed: 30281307
Faraday Discuss. 2013;160:135-49; discussion 207-24
pubmed: 23795497
J Phys Chem B. 2006 Apr 13;110(14):7485-9
pubmed: 16599528
J Comput Chem. 2005 May;26(7):699-707
pubmed: 15761861
J Chem Theory Comput. 2015 Jun 9;11(6):2589-99
pubmed: 26575557
J Chem Theory Comput. 2016 Aug 9;12(8):3603-13
pubmed: 27304856
J Chem Phys. 2017 Oct 28;147(16):161702
pubmed: 29096511
Chem Commun (Camb). 2008 Aug 7;(29):3339-51
pubmed: 18633489
J Chem Theory Comput. 2019 Apr 9;15(4):2460-2469
pubmed: 30811193
J Phys Chem Lett. 2017 Sep 21;8(18):4362-4367
pubmed: 28846430
J Chem Phys. 2011 Aug 28;135(8):084505
pubmed: 21895197
J Phys Chem B. 2006 Sep 14;110(36):18026-39
pubmed: 16956294
ACS Nano. 2015 Jun 23;9(6):5999-6017
pubmed: 26038979
J Chem Theory Comput. 2015 Feb 10;11(2):623-34
pubmed: 26516318
J Phys Chem A. 2005 Oct 27;109(42):9388-92
pubmed: 16866386
J Phys Chem A. 2014 Sep 25;118(38):8842-51
pubmed: 25133873
J Chem Phys. 2013 Feb 21;138(7):074108
pubmed: 23444998
J Phys Chem B. 2018 Sep 13;122(36):8548-8559
pubmed: 30130409
J Phys Chem B. 2009 Jul 23;113(29):9840-51
pubmed: 19555097
J Chem Phys. 2016 Mar 21;144(11):114504
pubmed: 27004884
J Phys Chem Lett. 2015 Dec 17;6(24):4978-85
pubmed: 26722704
J Chem Theory Comput. 2017 Jan 10;13(1):180-190
pubmed: 28068773
Phys Chem Chem Phys. 2011 Sep 21;13(35):16055-62
pubmed: 21829806
J Chem Phys. 2005 Oct 8;123(14):144505
pubmed: 16238405
J Chem Theory Comput. 2010 Mar 9;6(3):795-804
pubmed: 26613307
J Phys Chem B. 2010 Jul 1;114(25):8453-9
pubmed: 20527944
J Chem Phys. 2013 May 28;138(20):204504
pubmed: 23742490
J Chem Phys. 2008 Dec 7;129(21):214113
pubmed: 19063550
J Chem Phys. 2018 May 21;148(19):193834
pubmed: 30307184
Phys Chem Chem Phys. 2015 Jun 14;17(22):14297-306
pubmed: 25425140
J Phys Chem B. 2006 Aug 31;110(34):16816-8
pubmed: 16927967
J Am Chem Soc. 2005 Oct 19;127(41):14250-6
pubmed: 16218619
J Chem Theory Comput. 2011 Jun 14;7(6):1902-15
pubmed: 26596451
J Phys Chem A. 2014 Sep 4;118(35):7598-612
pubmed: 24878003
J Phys Chem Lett. 2017 Apr 20;8(8):1714-1723
pubmed: 28350167
J Phys Chem Lett. 2014 Sep 18;5(18):3144-3150
pubmed: 25247054
J Phys Chem B. 2006 Sep 21;110(37):18553-9
pubmed: 16970483
J Chem Phys. 2016 Sep 28;145(12):124508
pubmed: 27782645
J Comput Chem. 2004 Sep;25(12):1504-14
pubmed: 15224394
J Phys Chem B. 2018 Nov 1;122(43):9994-10004
pubmed: 30299097
ACS Macro Lett. 2015 Jul 21;4(7):799-803
pubmed: 35596479
J Chem Theory Comput. 2007 Nov;3(6):1960-1986
pubmed: 18978934
J Phys Chem B. 2016 Apr 14;120(14):3560-8
pubmed: 26900644
J Chem Inf Model. 2018 May 29;58(5):993-1004
pubmed: 29624370
J Chem Phys. 2006 Nov 14;125(18):184101
pubmed: 17115732
J Phys Chem B. 2015 May 7;119(18):5882-95
pubmed: 25853313
J Chem Theory Comput. 2005 Nov;1(6):1128-32
pubmed: 26631656
J Phys Chem B. 2005 Oct 13;109(40):18988-99
pubmed: 16853445
Phys Chem Chem Phys. 2009 Apr 14;11(14):2452-8
pubmed: 19325978
J Chem Phys. 2008 Nov 14;129(18):184501
pubmed: 19045408
J Chem Phys. 2011 Jul 14;135(2):024502
pubmed: 21766952
J Chem Phys. 2014 Apr 14;140(14):144108
pubmed: 24735289
J Chem Phys. 2009 Feb 28;130(8):085102
pubmed: 19256627
Phys Chem Chem Phys. 2018 Jun 6;20(22):15106-15117
pubmed: 29808190
Chem Rev. 2016 May 11;116(9):4983-5013
pubmed: 26815602
J Chem Phys. 2013 Jan 21;138(3):034508
pubmed: 23343286
J Chem Inf Model. 2012 Dec 21;52(12):3155-68
pubmed: 23145473
J Phys Chem A. 2013 Jan 10;117(1):219-27
pubmed: 23214431
J Phys Chem B. 2008 Jul 3;112(26):7837-49
pubmed: 18537285
J Phys Chem Lett. 2018 Aug 16;9(16):4765-4770
pubmed: 30078326
J Phys Chem Lett. 2015 Sep 17;6(18):3594-609
pubmed: 26722729
J Phys Chem B. 2007 Mar 22;111(11):2873-85
pubmed: 17388420
J Chem Phys. 2018 May 21;148(19):193809
pubmed: 30307251
J Chem Theory Comput. 2010;6(3):774-786
pubmed: 20300554
Phys Chem Chem Phys. 2018 Apr 25;20(16):10992-10996
pubmed: 29644363
J Phys Chem B. 2014 Sep 11;118(36):10716-24
pubmed: 25144141
J Chem Theory Comput. 2016 Dec 13;12(12):5709-5718
pubmed: 27767309
J Phys Chem B. 2014 Mar 27;118(12):3409-22
pubmed: 24605817
Phys Chem Chem Phys. 2014 Mar 21;16(11):5174-82
pubmed: 24481408
Phys Chem Chem Phys. 2011 Jun 21;13(23):11359-66
pubmed: 21566824
J Chem Phys. 2004 Jan 1;120(1):73-87
pubmed: 15267263
J Chem Phys. 2018 Jul 28;149(4):044302
pubmed: 30068161
Eur Phys J E Soft Matter. 2017 Feb;40(2):19
pubmed: 28229319
J Chem Phys. 2016 Oct 28;145(16):164101
pubmed: 27802661
J Phys Chem B. 2016 Nov 10;120(44):11436-11448
pubmed: 27759379
Chemphyschem. 2008 Aug 4;9(11):1548-58
pubmed: 18613196
J Chem Theory Comput. 2014 Feb 28;10(4):1638-1651
pubmed: 26512230
J Comput Chem. 2015 Jul 15;36(19):1473-9
pubmed: 25962472
J Phys Condens Matter. 2017 Dec 20;29(50):504004
pubmed: 29125468

Auteurs

Dmitry Bedrov (D)

Department of Materials Science & Engineering , University of Utah , 122 South Central Campus Drive, Room 304 , Salt Lake City , Utah 84112 , United States.

Jean-Philip Piquemal (JP)

Laboratoire de Chimie Théorique , Sorbonne Université, UMR 7616 CNRS, CC137 , 4 Place Jussieu, Tour 12-13, 4ème étage , 75252 Paris Cedex 05 , France.
Institut Universitaire de France , 75005 , Paris Cedex 05 , France.
Department of Biomedical Engineering , The University of Texas at Austin , Austin , Texas 78712 , United States.

Oleg Borodin (O)

Electrochemistry Branch, Sensors and Electron Devices Directorate , Army Research Laboratory , 2800 Powder Mill Road , Adelphi , Maryland 20703 , United States.

Alexander D MacKerell (AD)

Department of Pharmaceutical Sciences, School of Pharmacy , University of Maryland , 20 Penn Street , Baltimore , Maryland 21201 , United States.

Benoît Roux (B)

Department of Biochemistry and Molecular Biology, Gordon Center for Integrative Science , University of Chicago , 929 57th Street , Chicago , Illinois 60637 , United States.

Christian Schröder (C)

Department of Computational Biological Chemistry , University of Vienna , Währinger Strasse 17 , A-1090 Vienna , Austria.

Articles similaires

Photosynthesis Ribulose-Bisphosphate Carboxylase Carbon Dioxide Molecular Dynamics Simulation Cyanobacteria
Fucosyltransferases Drug Repositioning Molecular Docking Simulation Molecular Dynamics Simulation Humans
Receptor, Cannabinoid, CB1 Ligands Molecular Dynamics Simulation Protein Binding Thermodynamics

Amyloid accelerator polyphosphate fits as the mystery density in α-synuclein fibrils.

Philipp Huettemann, Pavithra Mahadevan, Justine Lempart et al.
1.00
Polyphosphates alpha-Synuclein Humans Amyloid Molecular Dynamics Simulation

Classifications MeSH