Decoding the ocean's microbiological secrets for marine enzyme biodiscovery.


Journal

FEMS microbiology letters
ISSN: 1574-6968
Titre abrégé: FEMS Microbiol Lett
Pays: England
ID NLM: 7705721

Informations de publication

Date de publication:
01 01 2019
Historique:
received: 07 11 2018
accepted: 04 12 2018
pubmed: 12 12 2018
medline: 26 9 2019
entrez: 12 12 2018
Statut: ppublish

Résumé

A global census of marine microbial life has been underway over the past several decades. During this period, there have been scientific breakthroughs in estimating microbial diversity and understanding microbial functioning and ecology. It is estimated that the ocean, covering 71% of the earth's surface with its estimated volume of about 2 × 1018 m3 and an average depth of 3800 m, hosts the largest population of microbes on Earth. More than 2 million eukaryotic and prokaryotic species are thought to thrive both in the ocean and on its surface. Prokaryotic cell abundances can reach densities of up to 1012 cells per millilitre, exceeding eukaryotic densities of around 106 cells per millilitre of seawater. Besides their large numbers and abundance, marine microbial assemblages and their organic catalysts (enzymes) have a largely underestimated value for their use in the development of industrial products and processes. In this perspective article, we identified critical gaps in knowledge and technology to fast-track this development. We provided a general overview of the presumptive microbial assemblages in oceans, and an estimation of what is known and the enzymes that have been currently retrieved. We also discussed recent advances made in this area by the collaborative European Horizon 2020 project 'INMARE'.

Identifiants

pubmed: 30534987
pii: 5232402
doi: 10.1093/femsle/fny285
pmc: PMC6322442
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Review

Langues

eng

Sous-ensembles de citation

IM

Références

Syst Appl Microbiol. 2011 May;34(3):169-70
pubmed: 21497273
Curr Biol. 2017 Jun 5;27(11):R489-R494
pubmed: 28586685
Nat Rev Microbiol. 2014 Sep;12(9):635-45
pubmed: 25118885
J Biotechnol. 2016 Oct 10;235:132-8
pubmed: 26707808
Trends Microbiol. 2013 Apr;21(4):204-12
pubmed: 23453124
FEMS Microbiol Lett. 2017 Nov 1;364(20):
pubmed: 29029027
PLoS One. 2014 Feb 05;9(2):e87950
pubmed: 24516572
FEMS Microbiol Lett. 2018 Aug 1;365(16):
pubmed: 30010862
PLoS Biol. 2011 Aug;9(8):e1001127
pubmed: 21886479
Sci Rep. 2017 Mar 08;7:44103
pubmed: 28272521
ACS Chem Biol. 2018 Jan 19;13(1):225-234
pubmed: 29182315
Syst Appl Microbiol. 2010 Oct;33(6):291-9
pubmed: 20817437

Auteurs

Manuel Ferrer (M)

Department of Applied Biocatalysis, Institute of Catalysis, Consejo Superior de Investigaciones Científicas, Marie Curie 2, 28049 Madrid, Spain.

Celia Méndez-García (C)

Department of Applied Biocatalysis, Institute of Catalysis, Consejo Superior de Investigaciones Científicas, Marie Curie 2, 28049 Madrid, Spain.

Rafael Bargiela (R)

School of Natural Sciences, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.

Jennifer Chow (J)

Biozentrum Klein Flottbek, Mikrobiologie & Biotechnologie, Universität Hamburg, Ohnhorststr. 18, 22609 Hamburg, Germany.

Sandra Alonso (S)

Department of Applied Biocatalysis, Institute of Catalysis, Consejo Superior de Investigaciones Científicas, Marie Curie 2, 28049 Madrid, Spain.

Antonio García-Moyano (A)

NORCE Environment, NORCE Norwegian Research Centre AS, Thormøhlens gate 55, 5008 Bergen, Norway.

Gro E K Bjerga (GEK)

NORCE Environment, NORCE Norwegian Research Centre AS, Thormøhlens gate 55, 5008 Bergen, Norway.

Ida H Steen (IH)

Department of Biological Sciences and KG Jebsen Centre for Deep Sea Research, University of Bergen, Thormøhlensgt 53A/B, 5020 Bergen, Norway.

Tatjana Schwabe (T)

CLIB2021 - Cluster industrielle Biotechnologie, Voelklinger Str. 4, 40219 Düsseldorf, Germany.

Charlotte Blom (C)

Novozymes A/S, Krogshoejvej 36, 2880 Bagsvaerd, Denmark.

Jan Vester (J)

Novozymes A/S, Krogshoejvej 36, 2880 Bagsvaerd, Denmark.

Andrea Weckbecker (A)

evoxx technologies GmbH, Alfred-Nobel-Str. 10, 40789 Monheim am Rhein, Germany.

Patrick Shahgaldian (P)

School of Life Sciences, University of Applied Sciences and Arts Northwestern Switzerland, Hofackerstrasse 35, CH-4132 Muttenz, Switzerland.

Carla C C R de Carvalho (CCCR)

iBB - Institute for Bioengineering and Biosciences, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal.

Rolandas Meskys (R)

Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekio 7, LT-10257 Vilnius, Lithuania.

Giulio Zanaroli (G)

Department of Civil, Chemical, Environmental and Materials Engineering (DICAM), University of Bologna, via Terracini 28, 40131 Bologna, Italy.

Frank O Glöckner (FO)

Jacobs University Bremen gGmbH, Campus Ring 1, 28759 Bremen, Germany.
Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.

Antonio Fernández-Guerra (A)

Jacobs University Bremen gGmbH, Campus Ring 1, 28759 Bremen, Germany.

Siva Thambisetty (S)

London School of Economics and Political Science, Houghton Street, WC2A 2AE London, United Kingdom.

Fernando de la Calle (F)

Microbiology R&D Dpt., Pharma Mar, S.A., Avda. Los Reyes, 1, 28770 Colmenar Viejo, Madrid, Spain.

Olga V Golyshina (OV)

School of Natural Sciences, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.
Centre for Environmental Biotechnology, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.

Michail M Yakimov (MM)

Institute for Biological Resources and Marine Biotechnology, IRBIM-CNR, Spianata S. Raineri 86, 98122 Messina, Italy.
Institute of Living Systems, Immanuel Kant Baltic Federal University, Nevskogo 14 a, 236016 Kaliningrad, Russia.

Karl-Erich Jaeger (KE)

Institute of Molecular Enzyme Technology, Heinrich Heine University Düsseldorf and Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Strasse, 52428 Jülich, Germany.

Alexander F Yakunin (AF)

School of Natural Sciences, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.
Centre for Environmental Biotechnology, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.
Department of Chemical Engineering and Applied Chemistry, University of Toronto, 200 College Street, Toronto, M5S 3E5 Ontario, Canada.

Wolfgang R Streit (WR)

Biozentrum Klein Flottbek, Mikrobiologie & Biotechnologie, Universität Hamburg, Ohnhorststr. 18, 22609 Hamburg, Germany.

Oonagh McMeel (O)

Seascape Belgium bvba, Kindermansstraat 14/19, 1000 Brussels, Belgium.

Jan-Bart Calewaert (JB)

Seascape Belgium bvba, Kindermansstraat 14/19, 1000 Brussels, Belgium.

Nathalie Tonné (N)

Seascape Belgium bvba, Kindermansstraat 14/19, 1000 Brussels, Belgium.

Peter N Golyshin (PN)

School of Natural Sciences, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.
Centre for Environmental Biotechnology, Bangor University, Deiniol Road, LL57 2UW Bangor, United Kingdom.

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